R version 2.6.1 (2007-11-26) Copyright (C) 2007 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > y <- c(99.5,101.6,103.9,106.6,108.3,102,93.8,91.6,97.7,94.8,98,103.8,97.8,91.2,89.3,87.5,90.4,94.2,102.2,101.3,96,90.8,93.2,90.9,91.1,90.2,94.3,96,99,103.3,113.1,112.8,112.1,107.4,111,110.5,110.8,112.4,111.5,116.2,122.5,121.3,113.9,110.7,120.8,141.1,147.4,148,158.1,165,187,190.3,182.4,168.8,151.2,120.1,112.5,106.2,107.1,108.5,106.5,108.3,125.6,124,127.2,136.9,135.8,124.3,115.4,113.6,114.4,118.4,117,116.5,115.4,113.6,117.4,116.9,116.4,111.1,110.2,118.9,131.8,130.6,138.3,148.4,148.7,144.3,152.5,162.9,167.2,166.5,185.6) > x <- c(102.7,103.2,105.6,103.9,107.2,100.7,92.1,90.3,93.4,98.5,100.8,102.3,104.7,101.1,101.4,99.5,98.4,96.3,100.7,101.2,100.3,97.8,97.4,98.6,99.7,99,98.1,97,98.5,103.8,114.4,124.5,134.2,131.8,125.6,119.9,114.9,115.5,112.5,111.4,115.3,110.8,103.7,111.1,113,111.2,117.6,121.7,127.3,129.8,137.1,141.4,137.4,130.7,117.2,110.8,111.4,108.2,108.8,110.2,109.5,109.5,116,111.2,112.1,114,119.1,114.1,115.1,115.4,110.8,116,119.2,126.5,127.8,131.3,140.3,137.3,143,134.5,139.9,159.3,170.4,175,175.8,180.9,180.3,169.6,172.3,184.8,177.7,184.6,211.4) > par7 = 'Y' > par6 = 'Y' > par5 = '0' > par4 = '0' > par3 = '0' > par2 = '50' > par1 = '50' > ylab = 'y' > xlab = 'x' > main = 'Bivariate Kernel Density' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: WESSA, (2007), Bivariate Kernel Density Estimation (v1.0.5) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_bidensity.wasp/ > #Source of accompanying publication: Lucy, D. Aykroyd, R.G. & Pollard, A.M.(2002) Non-parametric calibration for age estimation. Applied Statistics 51(2): 183-196 > #Technical description: This code makes use of the GenKern package. The dataset is based on http://exploringdata.cqu.edu.au/datasets/chirps.tab : x = temperature (degrees F) and y = chirps per second of crickets (insects). > par1 <- as(par1,'numeric') > par2 <- as(par2,'numeric') > par3 <- as(par3,'numeric') > par4 <- as(par4,'numeric') > par5 <- as(par5,'numeric') > library('GenKern') Loading required package: KernSmooth KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading GenKern version 1.1 Copyright Lucy and Aykroyd 2000 last update October 2004 requires KernSmooth Package GenKern installed > if (par3==0) par3 <- dpik(x) > if (par4==0) par4 <- dpik(y) > if (par5==0) par5 <- cor(x,y) > if (par1 > 500) par1 <- 500 > if (par2 > 500) par2 <- 500 > postscript(file="/var/www/html/rcomp/tmp/1xha91197580890.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > op <- KernSur(x,y, xgridsize=par1, ygridsize=par2, correlation=par5, xbandwidth=par3, ybandwidth=par4) > image(op$xords, op$yords, op$zden, col=terrain.colors(100), axes=TRUE,main=main,xlab=xlab,ylab=ylab) > if (par6=='Y') contour(op$xords, op$yords, op$zden, add=TRUE) > if (par7=='Y') points(x,y) > (r<-lm(y ~ x)) Call: lm(formula = y ~ x) Coefficients: (Intercept) x 35.1040 0.6931 > abline(r) > box() > dev.off() null device 1 > load(file='/var/www/html/rcomp/createtable') > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Bandwidth',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'x axis',header=TRUE) > a<-table.element(a,par3) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'y axis',header=TRUE) > a<-table.element(a,par4) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Correlation',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'correlation used in KDE',header=TRUE) > a<-table.element(a,par5) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'correlation(x,y)',header=TRUE) > a<-table.element(a,cor(x,y)) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/2hegv1197580890.tab") > > system("convert tmp/1xha91197580890.ps tmp/1xha91197580890.png") > > > proc.time() user system elapsed 1.459 0.437 1.521