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Type 'q()' to quit R. > x <- array(list(101.5,126.6,93.9,89.8,93.4,101.5,110.4,105.9,108.4,113.9,86.1,69.4,101.2,100.5,98,106.6,90.1,96.9,125.9,112,100,123.9,79.8,83.4,113.6,112.9,104,109.9,99,106.3,128.9,111.1,102.9,130,87,87.5,117.6,103.4,110.8,112.6,102.5,112.4,135.6,105.1,127.7,137,91,90.5,122.4,123.3,124.3,120,118.1,119,142.7,123.6,129.6,146.9,108.7,99.4),dim=c(1,60),dimnames=list(c('Invest'),1:60)) > y <- array(NA,dim=c(1,60),dimnames=list(c('Invest'),1:60)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'FALSE' > par3 = 'FALSE' > par2 = 'ALL' > par1 = 'ward' > ylab = 'height' > xlab = 'cases' > main = 'Dendrogram' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > par3 <- as.logical(par3) > par4 <- as.logical(par4) > if (par3 == 'TRUE'){ + dum = xlab + xlab = ylab + ylab = dum + } > x <- t(y) > hc <- hclust(dist(x),method=par1) > d <- as.dendrogram(hc) > str(d) --[dendrogram w/ 2 branches and 60 members at h = 447] |--[dendrogram w/ 2 branches and 19 members at h = 74.2] | |--[dendrogram w/ 2 branches and 4 members at h = 14.2] | | |--[dendrogram w/ 2 branches and 2 members at h = 1.4] | | | |--leaf "43" | | | `--leaf "46" | | `--[dendrogram w/ 2 branches and 2 members at h = 4.2] | | |--leaf "55" | | `--leaf "58" | `--[dendrogram w/ 2 branches and 15 members at h = 32.5] | |--[dendrogram w/ 2 branches and 6 members at h = 6.37] | | |--[dendrogram w/ 2 branches and 3 members at h = 1.07] | | | |--leaf "31" | | | `--[dendrogram w/ 2 branches and 2 members at h = 0.4] | | | |--leaf "34" | | | `--leaf "57" | | `--[dendrogram w/ 2 branches and 3 members at h = 1.7] | | |--leaf "45" | | `--[dendrogram w/ 2 branches and 2 members at h = 0.7] | | |--leaf "2" | | `--leaf "19" | `--[dendrogram w/ 2 branches and 9 members at h = 17.6] | |--[dendrogram w/ 2 branches and 5 members at h = 1.87] | | |--leaf "49" | | `--[dendrogram w/ 2 branches and 4 members at h = 0.95] | | |--[dendrogram w/ 2 branches and 2 members at h = 0.3] | | | |--leaf "50" | | | `--leaf "56" | | `--[dendrogram w/ 2 branches and 2 members at h = 0.4] | | |--leaf "22" | | `--leaf "51" | `--[dendrogram w/ 2 branches and 4 members at h = 2.55] | |--[dendrogram w/ 2 branches and 2 members at h = 0.5] | | |--leaf "37" | | `--leaf "53" | `--[dendrogram w/ 2 branches and 2 members at h = 1] | |--leaf "52" | `--leaf "54" `--[dendrogram w/ 2 branches and 41 members at h = 215] |--[dendrogram w/ 2 branches and 14 members at h = 40.7] | |--[dendrogram w/ 2 branches and 8 members at h = 15.6] | | |--[dendrogram w/ 2 branches and 4 members at h = 1.2] | | | |--[dendrogram w/ 2 branches and 2 members at h = 0.3] | | | | |--leaf "4" | | | | `--leaf "17" | | | `--[dendrogram w/ 2 branches and 2 members at h = 0.5] | | | |--leaf "47" | | | `--leaf "48" | | `--[dendrogram w/ 2 branches and 4 members at h = 6.8] | | |--[dendrogram w/ 2 branches and 2 members at h = 0.5] | | | |--leaf "3" | | | `--leaf "5" | | `--[dendrogram w/ 2 branches and 2 members at h = 1.1] | | |--leaf "15" | | `--leaf "18" | `--[dendrogram w/ 2 branches and 6 members at h = 23.1] | |--leaf "12" | `--[dendrogram w/ 2 branches and 5 members at h = 9.73] | |--[dendrogram w/ 2 branches and 3 members at h = 1.37] | | |--leaf "11" | | `--[dendrogram w/ 2 branches and 2 members at h = 0.5] | | |--leaf "35" | | `--leaf "36" | `--[dendrogram w/ 2 branches and 2 members at h = 3.6] | |--leaf "23" | `--leaf "24" `--[dendrogram w/ 2 branches and 27 members at h = 84.8] |--[dendrogram w/ 2 branches and 12 members at h = 12.5] | |--[dendrogram w/ 2 branches and 6 members at h = 2.72] | | |--[dendrogram w/ 2 branches and 2 members at h = 0.3] | | | |--leaf "10" | | | `--leaf "25" | | `--[dendrogram w/ 2 branches and 4 members at h = 0.783] | | |--leaf "20" | | `--[dendrogram w/ 2 branches and 3 members at h = 0.467] | | |--leaf "26" | | `--[dendrogram w/ 2 branches and 2 members at h = 0.2] | | |--leaf "40" | | `--leaf "42" | `--[dendrogram w/ 2 branches and 6 members at h = 4.47] | |--[dendrogram w/ 2 branches and 2 members at h = 0.3] | | |--leaf "9" | | `--leaf "59" | `--[dendrogram w/ 2 branches and 4 members at h = 1.2] | |--[dendrogram w/ 2 branches and 2 members at h = 0.3] | | |--leaf "32" | | `--leaf "39" | `--[dendrogram w/ 2 branches and 2 members at h = 0.5] | |--leaf "7" | `--leaf "28" `--[dendrogram w/ 2 branches and 15 members at h = 20.7] |--[dendrogram w/ 2 branches and 7 members at h = 4.42] | |--[dendrogram w/ 2 branches and 3 members at h = 0.4] | | |--leaf "13" | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "1" | | `--leaf "6" | `--[dendrogram w/ 2 branches and 4 members at h = 1.65] | |--[dendrogram w/ 2 branches and 2 members at h = 0.4] | | |--leaf "29" | | `--leaf "60" | `--[dendrogram w/ 2 branches and 2 members at h = 0.5] | |--leaf "14" | `--leaf "21" `--[dendrogram w/ 2 branches and 8 members at h = 8.62] |--[dendrogram w/ 2 branches and 4 members at h = 1.5] | |--[dendrogram w/ 2 branches and 2 members at h = 0.4] | | |--leaf "33" | | `--leaf "41" | `--[dendrogram w/ 2 branches and 2 members at h = 0.6] | |--leaf "27" | `--leaf "38" `--[dendrogram w/ 2 branches and 4 members at h = 1.52] |--leaf "44" `--[dendrogram w/ 2 branches and 3 members at h = 0.633] |--leaf "8" `--[dendrogram w/ 2 branches and 2 members at h = 0.3] |--leaf "16" `--leaf "30" > mysub <- paste('Method: ',par1) > postscript(file="/var/www/html/rcomp/tmp/1qq6r1193929960.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if (par4 == 'TRUE'){ + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } > dev.off() null device 1 > if (par2 != 'ALL'){ + if (par3 == 'TRUE'){ + ylab = 'cluster' + } else { + xlab = 'cluster' + } + par2 <- as.numeric(par2) + memb <- cutree(hc, k = par2) + cent <- NULL + for(k in 1:par2){ + cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) + } + hc1 <- hclust(dist(cent),method=par1, members = table(memb)) + de <- as.dendrogram(hc1) + postscript(file="/var/www/html/rcomp/tmp/2n5zq1193929960.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + if (par4 == 'TRUE'){ + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } + dev.off() + str(de) + } > load(file='/var/www/html/rcomp/createtable') > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Summary of Dendrogram',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Label',header=TRUE) > a<-table.element(a,'Height',header=TRUE) > a<-table.row.end(a) > num <- length(x[,1])-1 > for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,hc$labels[i]) + a<-table.element(a,hc$height[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/34nrf1193929960.tab") > if (par2 != 'ALL'){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Label',header=TRUE) + a<-table.element(a,'Height',header=TRUE) + a<-table.row.end(a) + num <- par2-1 + for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,i) + a<-table.element(a,hc1$height[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/4x1qq1193929960.tab") + } > > system("convert tmp/1qq6r1193929960.ps tmp/1qq6r1193929960.png") > system("convert tmp/2n5zq1193929960.ps tmp/2n5zq1193929960.png") convert: unable to open image `tmp/2n5zq1193929960.ps': No such file or directory. convert: missing an image filename `tmp/2n5zq1193929960.png'. > > > proc.time() user system elapsed 0.819 0.191 0.892