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Type 'q()' to quit R. > x <- array(list(7.8,7.9,7.9,7.9,7.9,8,8,8.1,8.1,8.1,8.2,8.3,8.3,8.3,8.4,8.4,8.5,8.6,8.6,8.6,8.7,8.7,8.7,8.7,8.7,8.7,8.7,8.8,8.8,8.8,8.8,8.8,8.9,8.9,8.8,8.8,8.8,8.8,8.7,8.7,8.7,8.8,8.8,8.7,8.7,8.6,8.5,8.4,8.3,8.3,8.4,8.4,8.3,8.2,8.1,8,7.9,7.9,7.8,7.8,7.7,7.7,7.6,7.5,7.4,7.2,7.1,7,7,6.9,6.9,6.9),dim=c(1,72),dimnames=list(c('EU'),1:72)) > y <- array(NA,dim=c(1,72),dimnames=list(c('EU'),1:72)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'FALSE' > par3 = 'FALSE' > par2 = 'ALL' > par1 = 'ward' > ylab = 'height' > xlab = 'cases' > main = 'Dendrogram' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > par3 <- as.logical(par3) > par4 <- as.logical(par4) > if (par3 == 'TRUE'){ + dum = xlab + xlab = ylab + ylab = dum + } > x <- t(y) > hc <- hclust(dist(x),method=par1) > d <- as.dendrogram(hc) > str(d) --[dendrogram w/ 2 branches and 72 members at h = 19.6] |--[dendrogram w/ 2 branches and 31 members at h = 1.73] | |--[dendrogram w/ 2 branches and 13 members at h = 0.338] | | |--[dendrogram w/ 2 branches and 11 members at h = 0] | | | |--leaf "43" | | | `--[dendrogram w/ 2 branches and 10 members at h = 0] | | | |--leaf "42" | | | `--[dendrogram w/ 2 branches and 9 members at h = 0] | | | |--leaf "38" | | | `--[dendrogram w/ 2 branches and 8 members at h = 0] | | | |--leaf "37" | | | `--[dendrogram w/ 2 branches and 7 members at h = 0] | | | |--leaf "36" | | | `--[dendrogram w/ 2 branches and 6 members at h = 0] | | | |--leaf "35" | | | `--[dendrogram w/ 2 branches and 5 members at h = 0] | | | |--leaf "32" | | | `--[dendrogram w/ 2 branches and 4 members at h = 0] | | | |--leaf "31" | | | `--[dendrogram w/ 2 branches and 3 members at h = 0] | | | |--leaf "30" | | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | | |--leaf "28" | | | `--leaf "29" | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "33" | | `--leaf "34" | `--[dendrogram w/ 2 branches and 18 members at h = 0.889] | |--[dendrogram w/ 2 branches and 12 members at h = 0] | | |--leaf "45" | | `--[dendrogram w/ 2 branches and 11 members at h = 0] | | |--leaf "44" | | `--[dendrogram w/ 2 branches and 10 members at h = 0] | | |--leaf "41" | | `--[dendrogram w/ 2 branches and 9 members at h = 0] | | |--leaf "40" | | `--[dendrogram w/ 2 branches and 8 members at h = 0] | | |--leaf "39" | | `--[dendrogram w/ 2 branches and 7 members at h = 0] | | |--leaf "27" | | `--[dendrogram w/ 2 branches and 6 members at h = 0] | | |--leaf "26" | | `--[dendrogram w/ 2 branches and 5 members at h = 0] | | |--leaf "25" | | `--[dendrogram w/ 2 branches and 4 members at h = 0] | | |--leaf "24" | | `--[dendrogram w/ 2 branches and 3 members at h = 0] | | |--leaf "23" | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "21" | | `--leaf "22" | `--[dendrogram w/ 2 branches and 6 members at h = 0.267] | |--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "17" | | `--leaf "47" | `--[dendrogram w/ 2 branches and 4 members at h = 0] | |--leaf "46" | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf "20" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "18" | `--leaf "19" `--[dendrogram w/ 2 branches and 41 members at h = 9.6] |--[dendrogram w/ 2 branches and 7 members at h = 0.46] | |--[dendrogram w/ 2 branches and 2 members at h = 0.1] | | |--leaf "66" | | `--leaf "67" | `--[dendrogram w/ 2 branches and 5 members at h = 0.24] | |--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "68" | | `--leaf "69" | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf "72" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "70" | `--leaf "71" `--[dendrogram w/ 2 branches and 34 members at h = 4.69] |--[dendrogram w/ 2 branches and 11 members at h = 0.545] | |--[dendrogram w/ 2 branches and 6 members at h = 0] | | |--leaf "53" | | `--[dendrogram w/ 2 branches and 5 members at h = 0] | | |--leaf "50" | | `--[dendrogram w/ 2 branches and 4 members at h = 0] | | |--leaf "49" | | `--[dendrogram w/ 2 branches and 3 members at h = 0] | | |--leaf "14" | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "12" | | `--leaf "13" | `--[dendrogram w/ 2 branches and 5 members at h = 0] | |--leaf "52" | `--[dendrogram w/ 2 branches and 4 members at h = 0] | |--leaf "51" | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf "48" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "15" | `--leaf "16" `--[dendrogram w/ 2 branches and 23 members at h = 2.24] |--[dendrogram w/ 2 branches and 8 members at h = 0.718] | |--[dendrogram w/ 2 branches and 3 members at h = 0.167] | | |--leaf "65" | | `--[dendrogram w/ 2 branches and 2 members at h = 0.1] | | |--leaf "63" | | `--leaf "64" | `--[dendrogram w/ 2 branches and 5 members at h = 0.24] | |--[dendrogram w/ 2 branches and 3 members at h = 0] | | |--leaf "60" | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "1" | | `--leaf "59" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "61" | `--leaf "62" `--[dendrogram w/ 2 branches and 15 members at h = 1.12] |--[dendrogram w/ 2 branches and 6 members at h = 0.267] | |--[dendrogram w/ 2 branches and 4 members at h = 0] | | |--leaf "55" | | `--[dendrogram w/ 2 branches and 3 members at h = 0] | | |--leaf "10" | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf "8" | | `--leaf "9" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "11" | `--leaf "54" `--[dendrogram w/ 2 branches and 9 members at h = 0.4] |--[dendrogram w/ 2 branches and 6 members at h = 0] | |--leaf "58" | `--[dendrogram w/ 2 branches and 5 members at h = 0] | |--leaf "57" | `--[dendrogram w/ 2 branches and 4 members at h = 0] | |--leaf "5" | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf "4" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "2" | `--leaf "3" `--[dendrogram w/ 2 branches and 3 members at h = 0] |--leaf "56" `--[dendrogram w/ 2 branches and 2 members at h = 0] |--leaf "6" `--leaf "7" > mysub <- paste('Method: ',par1) > postscript(file="/var/www/html/rcomp/tmp/1421i1193911399.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if (par4 == 'TRUE'){ + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } > dev.off() null device 1 > if (par2 != 'ALL'){ + if (par3 == 'TRUE'){ + ylab = 'cluster' + } else { + xlab = 'cluster' + } + par2 <- as.numeric(par2) + memb <- cutree(hc, k = par2) + cent <- NULL + for(k in 1:par2){ + cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) + } + hc1 <- hclust(dist(cent),method=par1, members = table(memb)) + de <- as.dendrogram(hc1) + postscript(file="/var/www/html/rcomp/tmp/2xqio1193911399.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + if (par4 == 'TRUE'){ + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } + dev.off() + str(de) + } > load(file='/var/www/html/rcomp/createtable') > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Summary of Dendrogram',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Label',header=TRUE) > a<-table.element(a,'Height',header=TRUE) > a<-table.row.end(a) > num <- length(x[,1])-1 > for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,hc$labels[i]) + a<-table.element(a,hc$height[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/3od0h1193911399.tab") > if (par2 != 'ALL'){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Label',header=TRUE) + a<-table.element(a,'Height',header=TRUE) + a<-table.row.end(a) + num <- par2-1 + for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,i) + a<-table.element(a,hc1$height[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/4b6ck1193911399.tab") + } > > system("convert tmp/1421i1193911399.ps tmp/1421i1193911399.png") > system("convert tmp/2xqio1193911399.ps tmp/2xqio1193911399.png") convert: unable to open image `tmp/2xqio1193911399.ps': No such file or directory. convert: missing an image filename `tmp/2xqio1193911399.png'. > > > proc.time() user system elapsed 0.858 0.201 0.957