R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(106.22
+ ,103.7
+ ,107.97
+ ,106.31
+ ,103.75
+ ,108.13
+ ,107.38
+ ,103.85
+ ,108.54
+ ,109.31
+ ,104.02
+ ,109.86
+ ,110.82
+ ,104.13
+ ,109.75
+ ,111.22
+ ,104.17
+ ,109.99
+ ,110.66
+ ,104.18
+ ,112.01
+ ,110.76
+ ,104.2
+ ,111.96
+ ,110.69
+ ,104.5
+ ,111.41
+ ,111.08
+ ,104.78
+ ,112.11
+ ,110.97
+ ,104.88
+ ,111.67
+ ,110.24
+ ,104.89
+ ,111.95
+ ,112.51
+ ,104.9
+ ,112.31
+ ,111.52
+ ,104.95
+ ,113.26
+ ,112.13
+ ,105.24
+ ,113.5
+ ,112.23
+ ,105.35
+ ,114.43
+ ,112.92
+ ,105.44
+ ,115.02
+ ,111.89
+ ,105.46
+ ,115.1
+ ,111.99
+ ,105.47
+ ,117.11
+ ,111.51
+ ,105.48
+ ,117.52
+ ,112.33
+ ,105.75
+ ,116.1
+ ,112.04
+ ,106.1
+ ,116.39
+ ,112.09
+ ,106.19
+ ,116.01
+ ,111.41
+ ,106.23
+ ,116.74
+ ,112.61
+ ,106.24
+ ,116.68
+ ,113.14
+ ,106.25
+ ,117.45
+ ,113.65
+ ,106.35
+ ,117.8
+ ,114.26
+ ,106.48
+ ,119.37
+ ,114.4
+ ,106.52
+ ,118.9
+ ,114.93
+ ,106.55
+ ,119.05
+ ,114.86
+ ,106.55
+ ,120.46
+ ,114.95
+ ,106.56
+ ,120.99
+ ,116.17
+ ,106.89
+ ,119.86
+ ,114.6
+ ,107.09
+ ,120.18
+ ,114.62
+ ,107.24
+ ,119.81
+ ,113.82
+ ,107.28
+ ,120.15
+ ,115.02
+ ,107.3
+ ,119.8
+ ,115.18
+ ,107.31
+ ,120.27
+ ,115.59
+ ,107.47
+ ,120.71
+ ,116.6
+ ,107.35
+ ,121.87
+ ,117.07
+ ,107.31
+ ,121.87
+ ,116.96
+ ,107.32
+ ,121.92
+ ,116.66
+ ,107.32
+ ,123.72
+ ,116.07
+ ,107.34
+ ,124.38
+ ,116.04
+ ,107.53
+ ,123.21
+ ,115.81
+ ,107.72
+ ,123.17
+ ,116.22
+ ,107.75
+ ,122.95
+ ,115.85
+ ,107.79
+ ,123.46
+ ,116.43
+ ,107.81
+ ,123.24
+ ,117.39
+ ,107.9
+ ,123.86
+ ,119.17
+ ,107.8
+ ,124.28
+ ,119.24
+ ,107.86
+ ,124.78
+ ,120.03
+ ,107.8
+ ,125.19
+ ,119.34
+ ,107.74
+ ,125.46
+ ,118.49
+ ,107.75
+ ,127.6
+ ,118.59
+ ,107.83
+ ,127.8
+ ,117.5
+ ,107.8
+ ,126.63
+ ,117.56
+ ,107.81
+ ,127.06
+ ,118.25
+ ,107.86
+ ,126.77
+ ,118.01
+ ,107.83
+ ,127.05)
+ ,dim=c(3
+ ,60)
+ ,dimnames=list(c('V&D'
+ ,'K&S'
+ ,'HCR')
+ ,1:60))
>  y <- array(NA,dim=c(3,60),dimnames=list(c('V&D','K&S','HCR'),1:60))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 60 members at h = 212]
  |--[dendrogram w/ 2 branches and 25 members at h = 44]
  |  |--[dendrogram w/ 2 branches and 13 members at h = 11.7]
  |  |  |--[dendrogram w/ 2 branches and 7 members at h = 2.44]
  |  |  |  |--[dendrogram w/ 2 branches and 4 members at h = 0.916]
  |  |  |  |  |--leaf "25" 
  |  |  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 0.568]
  |  |  |  |     |--leaf "21" 
  |  |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.394]
  |  |  |  |        |--leaf "22" 
  |  |  |  |        `--leaf "23" 
  |  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 1.20]
  |  |  |     |--leaf "24" 
  |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.631]
  |  |  |        |--leaf "19" 
  |  |  |        `--leaf "20" 
  |  |  `--[dendrogram w/ 2 branches and 6 members at h = 3.92]
  |  |     |--[dendrogram w/ 2 branches and 3 members at h = 1.04]
  |  |     |  |--leaf "17" 
  |  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.76]
  |  |     |     |--leaf "16" 
  |  |     |     `--leaf "18" 
  |  |     `--[dendrogram w/ 2 branches and 3 members at h = 1.54]
  |  |        |--leaf "13" 
  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 0.717]
  |  |           |--leaf "14" 
  |  |           `--leaf "15" 
  |  `--[dendrogram w/ 2 branches and 12 members at h = 18.6]
  |     |--[dendrogram w/ 2 branches and 3 members at h = 1.57]
  |     |  |--leaf "3" 
  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.190]
  |     |     |--leaf "1" 
  |     |     `--leaf "2" 
  |     `--[dendrogram w/ 2 branches and 9 members at h = 6.08]
  |        |--[dendrogram w/ 2 branches and 6 members at h = 1.22]
  |        |  |--[dendrogram w/ 2 branches and 2 members at h = 0.114]
  |        |  |  |--leaf "7" 
  |        |  |  `--leaf "8" 
  |        |  `--[dendrogram w/ 2 branches and 4 members at h = 0.915]
  |        |     |--leaf "12" 
  |        |     `--[dendrogram w/ 2 branches and 3 members at h = 0.77]
  |        |        |--leaf "9" 
  |        |        `--[dendrogram w/ 2 branches and 2 members at h = 0.464]
  |        |           |--leaf "10" 
  |        |           `--leaf "11" 
  |        `--[dendrogram w/ 2 branches and 3 members at h = 2.14]
  |           |--leaf "4" 
  |           `--[dendrogram w/ 2 branches and 2 members at h = 0.468]
  |              |--leaf "5" 
  |              `--leaf "6" 
  `--[dendrogram w/ 2 branches and 35 members at h = 62.5]
     |--[dendrogram w/ 2 branches and 14 members at h = 7.58]
     |  |--[dendrogram w/ 2 branches and 9 members at h = 2.28]
     |  |  |--[dendrogram w/ 2 branches and 5 members at h = 1.39]
     |  |  |  |--leaf "36" 
     |  |  |  `--[dendrogram w/ 2 branches and 4 members at h = 0.734]
     |  |  |     |--[dendrogram w/ 2 branches and 2 members at h = 0.4]
     |  |  |     |  |--leaf "34" 
     |  |  |     |  `--leaf "35" 
     |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.497]
     |  |  |        |--leaf "37" 
     |  |  |        `--leaf "38" 
     |  |  `--[dendrogram w/ 2 branches and 4 members at h = 1.90]
     |  |     |--[dendrogram w/ 2 branches and 2 members at h = 0.538]
     |  |     |  |--leaf "31" 
     |  |     |  `--leaf "32" 
     |  |     `--[dendrogram w/ 2 branches and 2 members at h = 1.18]
     |  |        |--leaf "33" 
     |  |        `--leaf "39" 
     |  `--[dendrogram w/ 2 branches and 5 members at h = 3.72]
     |     |--[dendrogram w/ 2 branches and 2 members at h = 0.627]
     |     |  |--leaf "26" 
     |     |  `--leaf "27" 
     |     `--[dendrogram w/ 2 branches and 3 members at h = 0.701]
     |        |--leaf "30" 
     |        `--[dendrogram w/ 2 branches and 2 members at h = 0.492]
     |           |--leaf "28" 
     |           `--leaf "29" 
     `--[dendrogram w/ 2 branches and 21 members at h = 28.4]
        |--[dendrogram w/ 2 branches and 11 members at h = 5.76]
        |  |--[dendrogram w/ 2 branches and 3 members at h = 0.517]
        |  |  |--leaf "40" 
        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.121]
        |  |     |--leaf "41" 
        |  |     `--leaf "42" 
        |  `--[dendrogram w/ 2 branches and 8 members at h = 2.52]
        |     |--[dendrogram w/ 2 branches and 5 members at h = 0.799]
        |     |  |--[dendrogram w/ 2 branches and 2 members at h = 0.363]
        |     |  |  |--leaf "47" 
        |     |  |  `--leaf "49" 
        |     |  `--[dendrogram w/ 2 branches and 3 members at h = 0.372]
        |     |     |--leaf "45" 
        |     |     `--[dendrogram w/ 2 branches and 2 members at h = 0.301]
        |     |        |--leaf "46" 
        |     |        `--leaf "48" 
        |     `--[dendrogram w/ 2 branches and 3 members at h = 1.35]
        |        |--leaf "50" 
        |        `--[dendrogram w/ 2 branches and 2 members at h = 0.885]
        |           |--leaf "43" 
        |           `--leaf "44" 
        `--[dendrogram w/ 2 branches and 10 members at h = 9.73]
           |--[dendrogram w/ 2 branches and 4 members at h = 1.39]
           |  |--[dendrogram w/ 2 branches and 2 members at h = 0.508]
           |  |  |--leaf "51" 
           |  |  `--leaf "52" 
           |  `--[dendrogram w/ 2 branches and 2 members at h = 0.743]
           |     |--leaf "53" 
           |     `--leaf "54" 
           `--[dendrogram w/ 2 branches and 6 members at h = 2.26]
              |--[dendrogram w/ 2 branches and 2 members at h = 0.237]
              |  |--leaf "55" 
              |  `--leaf "56" 
              `--[dendrogram w/ 2 branches and 4 members at h = 0.912]
                 |--[dendrogram w/ 2 branches and 2 members at h = 0.37]
                 |  |--leaf "59" 
                 |  `--leaf "60" 
                 `--[dendrogram w/ 2 branches and 2 members at h = 0.434]
                    |--leaf "57" 
                    `--leaf "58" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1gbjk1194288636.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2qdc71194288636.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> load(file='/var/www/html/rcomp/createtable')
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3s82p1194288637.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/45jav1194288638.tab") 
+ }
> 
> system("convert tmp/1gbjk1194288636.ps tmp/1gbjk1194288636.png")
> system("convert tmp/2qdc71194288636.ps tmp/2qdc71194288636.png")
convert: unable to open image `tmp/2qdc71194288636.ps': No such file or directory.
convert: missing an image filename `tmp/2qdc71194288636.png'.
> 
> 
> proc.time()
   user  system elapsed 
  1.546   0.301   1.613