R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(97.3
+ ,93.5
+ ,93.5
+ ,124.9
+ ,101
+ ,94.7
+ ,94.7
+ ,132
+ ,113.2
+ ,112.9
+ ,112.9
+ ,151.4
+ ,101
+ ,99.2
+ ,99.2
+ ,108.9
+ ,105.7
+ ,105.6
+ ,105.6
+ ,121.3
+ ,113.9
+ ,113
+ ,113
+ ,123.4
+ ,86.4
+ ,83.1
+ ,83.1
+ ,90.3
+ ,96.5
+ ,81.1
+ ,81.1
+ ,79.3
+ ,103.3
+ ,96.9
+ ,96.9
+ ,117.2
+ ,114.9
+ ,104.3
+ ,104.3
+ ,116.9
+ ,105.8
+ ,97.7
+ ,97.7
+ ,120.8
+ ,94.2
+ ,102.6
+ ,102.6
+ ,96.1
+ ,98.4
+ ,89.9
+ ,89.9
+ ,100.8
+ ,99.4
+ ,96
+ ,96
+ ,105.3
+ ,108.8
+ ,112.7
+ ,112.7
+ ,116.1
+ ,112.6
+ ,107.1
+ ,107.1
+ ,112.8
+ ,104.4
+ ,106.2
+ ,106.2
+ ,114.5
+ ,112.2
+ ,121
+ ,121
+ ,117.2
+ ,81.1
+ ,101.2
+ ,101.2
+ ,77.1
+ ,97.1
+ ,83.2
+ ,83.2
+ ,80.1
+ ,112.6
+ ,105.1
+ ,105.1
+ ,120.3
+ ,113.8
+ ,113.3
+ ,113.3
+ ,133.4
+ ,107.8
+ ,99.1
+ ,99.1
+ ,109.4
+ ,103.2
+ ,100.3
+ ,100.3
+ ,93.2
+ ,103.3
+ ,93.5
+ ,93.5
+ ,91.2
+ ,101.2
+ ,98.8
+ ,98.8
+ ,99.2
+ ,107.7
+ ,106.2
+ ,106.2
+ ,108.2
+ ,110.4
+ ,98.3
+ ,98.3
+ ,101.5
+ ,101.9
+ ,102.1
+ ,102.1
+ ,106.9
+ ,115.9
+ ,117.1
+ ,117.1
+ ,104.4
+ ,89.9
+ ,101.5
+ ,101.5
+ ,77.9
+ ,88.6
+ ,80.5
+ ,80.5
+ ,60
+ ,117.2
+ ,105.9
+ ,105.9
+ ,99.5
+ ,123.9
+ ,109.5
+ ,109.5
+ ,95
+ ,100
+ ,97.2
+ ,97.2
+ ,105.6
+ ,103.6
+ ,114.5
+ ,114.5
+ ,102.5
+ ,94.1
+ ,93.5
+ ,93.5
+ ,93.3
+ ,98.7
+ ,100.9
+ ,100.9
+ ,97.3
+ ,119.5
+ ,121.1
+ ,121.1
+ ,127
+ ,112.7
+ ,116.5
+ ,116.5
+ ,111.7
+ ,104.4
+ ,109.3
+ ,109.3
+ ,96.4
+ ,124.7
+ ,118.1
+ ,118.1
+ ,133
+ ,89.1
+ ,108.3
+ ,108.3
+ ,72.2
+ ,97
+ ,105.4
+ ,105.4
+ ,95.8
+ ,121.6
+ ,116.2
+ ,116.2
+ ,124.1
+ ,118.8
+ ,111.2
+ ,111.2
+ ,127.6
+ ,114
+ ,105.8
+ ,105.8
+ ,110.7
+ ,111.5
+ ,122.7
+ ,122.7
+ ,104.6
+ ,97.2
+ ,99.5
+ ,99.5
+ ,112.7
+ ,102.5
+ ,107.9
+ ,107.9
+ ,115.3
+ ,113.4
+ ,124.6
+ ,124.6
+ ,139.4
+ ,109.8
+ ,115
+ ,115
+ ,119
+ ,104.9
+ ,110.3
+ ,110.3
+ ,97.4
+ ,126.1
+ ,132.7
+ ,132.7
+ ,154
+ ,80
+ ,99.7
+ ,99.7
+ ,81.5
+ ,96.8
+ ,96.5
+ ,96.5
+ ,88.8
+ ,117.2
+ ,118.7
+ ,118.7
+ ,127.7
+ ,112.3
+ ,112.9
+ ,112.9
+ ,105.1
+ ,117.3
+ ,130.5
+ ,130.5
+ ,114.9
+ ,111.1
+ ,137.9
+ ,137.9
+ ,106.4
+ ,102.2
+ ,115
+ ,115
+ ,104.5
+ ,104.3
+ ,116.8
+ ,116.8
+ ,121.6
+ ,122.9
+ ,140.9
+ ,140.9
+ ,141.4
+ ,107.6
+ ,120.7
+ ,120.7
+ ,99
+ ,121.3
+ ,134.2
+ ,134.2
+ ,126.7
+ ,131.5
+ ,147.3
+ ,147.3
+ ,134.1
+ ,89
+ ,112.4
+ ,112.4
+ ,81.3
+ ,104.4
+ ,107.1
+ ,107.1
+ ,88.6
+ ,128.9
+ ,128.4
+ ,128.4
+ ,132.7
+ ,135.9
+ ,137.7
+ ,137.7
+ ,132.9
+ ,133.3
+ ,135
+ ,135
+ ,134.4
+ ,121.3
+ ,151
+ ,151
+ ,103.7
+ ,120.5
+ ,137.4
+ ,137.4
+ ,119.7
+ ,120.4
+ ,132.4
+ ,132.4
+ ,115
+ ,137.9
+ ,161.3
+ ,161.3
+ ,132.9
+ ,126.1
+ ,139.8
+ ,139.8
+ ,108.5
+ ,133.2
+ ,146
+ ,146
+ ,113.9
+ ,146.6
+ ,154.6
+ ,154.6
+ ,142.9
+ ,103.4
+ ,142.1
+ ,142.1
+ ,95.2
+ ,117.2
+ ,120.5
+ ,120.5
+ ,93)
+ ,dim=c(4
+ ,80)
+ ,dimnames=list(c('A'
+ ,'B'
+ ,'C'
+ ,'D')
+ ,1:80))
>  y <- array(NA,dim=c(4,80),dimnames=list(c('A','B','C','D'),1:80))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'complete'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 80 members at h = 146]
  |--[dendrogram w/ 2 branches and 30 members at h = 78]
  |  |--[dendrogram w/ 2 branches and 8 members at h = 44]
  |  |  |--leaf "32" 
  |  |  `--[dendrogram w/ 2 branches and 7 members at h = 24.9]
  |  |     |--[dendrogram w/ 2 branches and 3 members at h = 15.2]
  |  |     |  |--leaf "7" 
  |  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 3.13]
  |  |     |     |--leaf "8" 
  |  |     |     `--leaf "20" 
  |  |     `--[dendrogram w/ 2 branches and 4 members at h = 15.3]
  |  |        |--leaf "13" 
  |  |        `--[dendrogram w/ 2 branches and 3 members at h = 9.44]
  |  |           |--leaf "25" 
  |  |           `--[dendrogram w/ 2 branches and 2 members at h = 6.75]
  |  |              |--leaf "37" 
  |  |              `--leaf "56" 
  |  `--[dendrogram w/ 2 branches and 22 members at h = 51]
  |     |--[dendrogram w/ 2 branches and 9 members at h = 25.0]
  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 9.54]
  |     |  |  |--leaf "33" 
  |     |  |  `--leaf "34" 
  |     |  `--[dendrogram w/ 2 branches and 7 members at h = 20.4]
  |     |     |--[dendrogram w/ 2 branches and 3 members at h = 13.3]
  |     |     |  |--leaf "80" 
  |     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 7.39]
  |     |     |     |--leaf "48" 
  |     |     |     `--leaf "64" 
  |     |     `--[dendrogram w/ 2 branches and 4 members at h = 14.0]
  |     |        |--[dendrogram w/ 2 branches and 2 members at h = 2.54]
  |     |        |  |--leaf "36" 
  |     |        |  `--leaf "61" 
  |     |        `--[dendrogram w/ 2 branches and 2 members at h = 6.98]
  |     |           |--leaf "30" 
  |     |           `--leaf "58" 
  |     `--[dendrogram w/ 2 branches and 13 members at h = 33.8]
  |        |--[dendrogram w/ 2 branches and 8 members at h = 16.8]
  |        |  |--[dendrogram w/ 2 branches and 3 members at h = 9.9]
  |        |  |  |--leaf "68" 
  |        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 1.80]
  |        |  |     |--leaf "41" 
  |        |  |     `--leaf "53" 
  |        |  `--[dendrogram w/ 2 branches and 5 members at h = 10.8]
  |        |     |--[dendrogram w/ 2 branches and 2 members at h = 4.86]
  |        |     |  |--leaf "12" 
  |        |     |  `--leaf "44" 
  |        |     `--[dendrogram w/ 2 branches and 3 members at h = 6.67]
  |        |        |--leaf "24" 
  |        |        `--[dendrogram w/ 2 branches and 2 members at h = 4.32]
  |        |           |--leaf "26" 
  |        |           `--leaf "38" 
  |        `--[dendrogram w/ 2 branches and 5 members at h = 20.1]
  |           |--[dendrogram w/ 2 branches and 2 members at h = 10.8]
  |           |  |--leaf "43" 
  |           |  `--leaf "67" 
  |           `--[dendrogram w/ 2 branches and 3 members at h = 10.8]
  |              |--leaf "31" 
  |              `--[dendrogram w/ 2 branches and 2 members at h = 5.01]
  |                 |--leaf "19" 
  |                 `--leaf "55" 
  `--[dendrogram w/ 2 branches and 50 members at h = 104]
     |--[dendrogram w/ 2 branches and 33 members at h = 54.7]
     |  |--[dendrogram w/ 2 branches and 19 members at h = 32.3]
     |  |  |--[dendrogram w/ 2 branches and 4 members at h = 15.3]
     |  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 4.53]
     |  |  |  |  |--leaf "9" 
     |  |  |  |  `--leaf "11" 
     |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 8.18]
     |  |  |     |--leaf "1" 
     |  |  |     `--leaf "2" 
     |  |  `--[dendrogram w/ 2 branches and 15 members at h = 23.8]
     |  |     |--[dendrogram w/ 2 branches and 8 members at h = 13.5]
     |  |     |  |--[dendrogram w/ 2 branches and 3 members at h = 7.54]
     |  |     |  |  |--leaf "5" 
     |  |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 3.17]
     |  |     |  |     |--leaf "17" 
     |  |     |  |     `--leaf "50" 
     |  |     |  `--[dendrogram w/ 2 branches and 5 members at h = 13.1]
     |  |     |     |--[dendrogram w/ 2 branches and 2 members at h = 4.26]
     |  |     |     |  |--leaf "10" 
     |  |     |     |  `--leaf "21" 
     |  |     |     `--[dendrogram w/ 2 branches and 3 members at h = 6.84]
     |  |     |        |--leaf "27" 
     |  |     |        `--[dendrogram w/ 2 branches and 2 members at h = 3.12]
     |  |     |           |--leaf "16" 
     |  |     |           `--leaf "47" 
     |  |     `--[dendrogram w/ 2 branches and 7 members at h = 17.4]
     |  |        |--leaf "28" 
     |  |        `--[dendrogram w/ 2 branches and 6 members at h = 11.1]
     |  |           |--[dendrogram w/ 2 branches and 3 members at h = 7.69]
     |  |           |  |--leaf "23" 
     |  |           |  `--[dendrogram w/ 2 branches and 2 members at h = 4.65]
     |  |           |     |--leaf "4" 
     |  |           |     `--leaf "29" 
     |  |           `--[dendrogram w/ 2 branches and 3 members at h = 9.17]
     |  |              |--leaf "49" 
     |  |              `--[dendrogram w/ 2 branches and 2 members at h = 1.82]
     |  |                 |--leaf "14" 
     |  |                 `--leaf "35" 
     |  `--[dendrogram w/ 2 branches and 14 members at h = 40]
     |     |--[dendrogram w/ 2 branches and 2 members at h = 20.4]
     |     |  |--leaf "3" 
     |     |  `--leaf "51" 
     |     `--[dendrogram w/ 2 branches and 12 members at h = 24.6]
     |        |--[dendrogram w/ 2 branches and 5 members at h = 13]
     |        |  |--[dendrogram w/ 2 branches and 3 members at h = 8.14]
     |        |  |  |--leaf "40" 
     |        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 4.47]
     |        |  |     |--leaf "15" 
     |        |  |     `--leaf "52" 
     |        |  `--[dendrogram w/ 2 branches and 2 members at h = 10.8]
     |        |     |--leaf "18" 
     |        |     `--leaf "62" 
     |        `--[dendrogram w/ 2 branches and 7 members at h = 16.1]
     |           |--[dendrogram w/ 2 branches and 4 members at h = 9.8]
     |           |  |--leaf "42" 
     |           |  `--[dendrogram w/ 2 branches and 3 members at h = 7.8]
     |           |     |--leaf "45" 
     |           |     `--[dendrogram w/ 2 branches and 2 members at h = 4.16]
     |           |        |--leaf "39" 
     |           |        `--leaf "57" 
     |           `--[dendrogram w/ 2 branches and 3 members at h = 10]
     |              |--leaf "22" 
     |              `--[dendrogram w/ 2 branches and 2 members at h = 6.94]
     |                 |--leaf "6" 
     |                 `--leaf "46" 
     `--[dendrogram w/ 2 branches and 17 members at h = 66.7]
        |--[dendrogram w/ 2 branches and 9 members at h = 37.9]
        |  |--[dendrogram w/ 2 branches and 2 members at h = 14.8]
        |  |  |--leaf "60" 
        |  |  `--leaf "79" 
        |  `--[dendrogram w/ 2 branches and 7 members at h = 33.1]
        |     |--[dendrogram w/ 2 branches and 4 members at h = 13.5]
        |     |  |--[dendrogram w/ 2 branches and 2 members at h = 4.1]
        |     |  |  |--leaf "59" 
        |     |  |  `--leaf "74" 
        |     |  `--[dendrogram w/ 2 branches and 2 members at h = 8.37]
        |     |     |--leaf "65" 
        |     |     `--leaf "73" 
        |     `--[dendrogram w/ 2 branches and 3 members at h = 17.2]
        |        |--leaf "72" 
        |        `--[dendrogram w/ 2 branches and 2 members at h = 12.5]
        |           |--leaf "76" 
        |           `--leaf "77" 
        `--[dendrogram w/ 2 branches and 8 members at h = 47.4]
           |--[dendrogram w/ 2 branches and 2 members at h = 16.3]
           |  |--leaf "75" 
           |  `--leaf "78" 
           `--[dendrogram w/ 2 branches and 6 members at h = 29.2]
              |--[dendrogram w/ 2 branches and 2 members at h = 14.5]
              |  |--leaf "63" 
              |  `--leaf "66" 
              `--[dendrogram w/ 2 branches and 4 members at h = 24.3]
                 |--leaf "54" 
                 `--[dendrogram w/ 2 branches and 3 members at h = 14.9]
                    |--leaf "69" 
                    `--[dendrogram w/ 2 branches and 2 members at h = 4.86]
                       |--leaf "70" 
                       `--leaf "71" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1u56o1194297027.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2jp9x1194297027.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> load(file='/var/www/html/rcomp/createtable')
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3j0o21194297027.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4nbee1194297028.tab") 
+ }
> 
> system("convert tmp/1u56o1194297027.ps tmp/1u56o1194297027.png")
> system("convert tmp/2jp9x1194297027.ps tmp/2jp9x1194297027.png")
convert: unable to open image `tmp/2jp9x1194297027.ps': No such file or directory.
convert: missing an image filename `tmp/2jp9x1194297027.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.965   0.223   1.054