R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(95.90
+ ,2.90
+ ,96.92
+ ,95.86
+ ,96.06
+ ,2.63
+ ,96.06
+ ,96.02
+ ,96.31
+ ,2.67
+ ,96.59
+ ,96.34
+ ,96.34
+ ,1.81
+ ,96.67
+ ,96.84
+ ,96.49
+ ,1.33
+ ,97.27
+ ,96.73
+ ,96.22
+ ,0.88
+ ,96.38
+ ,96.34
+ ,96.53
+ ,1.28
+ ,96.47
+ ,96.60
+ ,96.50
+ ,1.26
+ ,96.05
+ ,96.64
+ ,96.77
+ ,1.26
+ ,96.76
+ ,97.20
+ ,96.66
+ ,1.29
+ ,96.51
+ ,97.50
+ ,96.58
+ ,1.10
+ ,96.55
+ ,96.99
+ ,96.63
+ ,1.37
+ ,95.97
+ ,97.08
+ ,97.06
+ ,1.21
+ ,97.00
+ ,97.55
+ ,97.73
+ ,1.74
+ ,97.46
+ ,98.42
+ ,98.01
+ ,1.76
+ ,97.90
+ ,98.78
+ ,97.76
+ ,1.48
+ ,98.42
+ ,97.49
+ ,97.49
+ ,1.04
+ ,98.54
+ ,96.99
+ ,97.77
+ ,1.62
+ ,99.00
+ ,97.16
+ ,97.96
+ ,1.49
+ ,98.94
+ ,97.29
+ ,98.23
+ ,1.79
+ ,99.02
+ ,97.80
+ ,98.51
+ ,1.80
+ ,100.07
+ ,98.12
+ ,98.19
+ ,1.58
+ ,98.72
+ ,98.03
+ ,98.37
+ ,1.86
+ ,98.73
+ ,98.11
+ ,98.31
+ ,1.74
+ ,98.04
+ ,98.07
+ ,98.60
+ ,1.59
+ ,99.08
+ ,98.21
+ ,98.97
+ ,1.26
+ ,99.22
+ ,98.48
+ ,99.11
+ ,1.13
+ ,99.57
+ ,98.83
+ ,99.64
+ ,1.92
+ ,100.44
+ ,99.20
+ ,100.03
+ ,2.61
+ ,100.84
+ ,99.88
+ ,99.98
+ ,2.26
+ ,100.75
+ ,99.71
+ ,100.32
+ ,2.41
+ ,100.49
+ ,100.03
+ ,100.44
+ ,2.26
+ ,99.98
+ ,100.60
+ ,100.51
+ ,2.03
+ ,99.96
+ ,100.85
+ ,101.00
+ ,2.86
+ ,99.76
+ ,101.96
+ ,100.88
+ ,2.55
+ ,100.11
+ ,101.40
+ ,100.55
+ ,2.27
+ ,99.79
+ ,100.81
+ ,100.83
+ ,2.26
+ ,100.29
+ ,100.66
+ ,101.51
+ ,2.57
+ ,101.12
+ ,101.55
+ ,102.16
+ ,3.07
+ ,102.65
+ ,102.23
+ ,102.39
+ ,2.76
+ ,102.71
+ ,102.90
+ ,102.54
+ ,2.51
+ ,103.39
+ ,102.68
+ ,102.85
+ ,2.87
+ ,102.80
+ ,103.41
+ ,103.47
+ ,3.14
+ ,102.07
+ ,104.62
+ ,103.57
+ ,3.11
+ ,102.15
+ ,104.93
+ ,103.69
+ ,3.16
+ ,101.21
+ ,105.88
+ ,103.50
+ ,2.47
+ ,101.27
+ ,105.18
+ ,103.47
+ ,2.57
+ ,101.86
+ ,104.54
+ ,103.45
+ ,2.89
+ ,101.65
+ ,104.58
+ ,103.48
+ ,2.63
+ ,101.94
+ ,104.34
+ ,103.93
+ ,2.38
+ ,102.62
+ ,104.66
+ ,103.89
+ ,1.69
+ ,102.71
+ ,104.73
+ ,104.40
+ ,1.96
+ ,103.39
+ ,105.44
+ ,104.79
+ ,2.19
+ ,104.51
+ ,105.72
+ ,104.77
+ ,1.87
+ ,104.09
+ ,105.68
+ ,105.13
+ ,1.60
+ ,104.29
+ ,105.90
+ ,105.26
+ ,1.63
+ ,104.57
+ ,105.97
+ ,104.96
+ ,1.22
+ ,105.39
+ ,105.21
+ ,104.75
+ ,1.21
+ ,105.15
+ ,104.75
+ ,105.01
+ ,1.49
+ ,106.13
+ ,104.89
+ ,105.15
+ ,1.64
+ ,105.46
+ ,105.26
+ ,105.20
+ ,1.66
+ ,106.47
+ ,104.84
+ ,105.77
+ ,1.77
+ ,106.62
+ ,105.47
+ ,105.78
+ ,1.82
+ ,106.52
+ ,105.40
+ ,106.26
+ ,1.78
+ ,108.04
+ ,105.73
+ ,106.13
+ ,1.28
+ ,107.15
+ ,105.72
+ ,106.12
+ ,1.29
+ ,107.32
+ ,105.63
+ ,106.57
+ ,1.37
+ ,107.76
+ ,105.97
+ ,106.44
+ ,1.12
+ ,107.26
+ ,105.92
+ ,106.54
+ ,1.51
+ ,107.89
+ ,106.32)
+ ,dim=c(4
+ ,69)
+ ,dimnames=list(c('1'
+ ,'2'
+ ,'3'
+ ,'4')
+ ,1:69))
>  y <- array(NA,dim=c(4,69),dimnames=list(c('1','2','3','4'),1:69))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 69 members at h = 236]
  |--[dendrogram w/ 2 branches and 27 members at h = 27.7]
  |  |--[dendrogram w/ 2 branches and 14 members at h = 4.34]
  |  |  |--[dendrogram w/ 2 branches and 7 members at h = 2.40]
  |  |  |  |--[dendrogram w/ 2 branches and 4 members at h = 0.632]
  |  |  |  |  |--leaf "25" 
  |  |  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 0.477]
  |  |  |  |     |--leaf "20" 
  |  |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.342]
  |  |  |  |        |--leaf "22" 
  |  |  |  |        `--leaf "23" 
  |  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 1.43]
  |  |  |     |--leaf "21" 
  |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.531]
  |  |  |        |--leaf "26" 
  |  |  |        `--leaf "27" 
  |  |  `--[dendrogram w/ 2 branches and 7 members at h = 3.93]
  |  |     |--[dendrogram w/ 2 branches and 3 members at h = 0.906]
  |  |     |  |--leaf "24" 
  |  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.634]
  |  |     |     |--leaf "14" 
  |  |     |     `--leaf "15" 
  |  |     `--[dendrogram w/ 2 branches and 4 members at h = 0.952]
  |  |        |--[dendrogram w/ 2 branches and 2 members at h = 0.271]
  |  |        |  |--leaf "18" 
  |  |        |  `--leaf "19" 
  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 0.729]
  |  |           |--leaf "16" 
  |  |           `--leaf "17" 
  |  `--[dendrogram w/ 2 branches and 13 members at h = 5.72]
  |     |--[dendrogram w/ 2 branches and 3 members at h = 0.896]
  |     |  |--leaf "1" 
  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.669]
  |     |     |--leaf "2" 
  |     |     `--leaf "3" 
  |     `--[dendrogram w/ 2 branches and 10 members at h = 2.00]
  |        |--[dendrogram w/ 2 branches and 4 members at h = 0.875]
  |        |  |--leaf "6" 
  |        |  `--[dendrogram w/ 2 branches and 3 members at h = 0.649]
  |        |     |--leaf "12" 
  |        |     `--[dendrogram w/ 2 branches and 2 members at h = 0.423]
  |        |        |--leaf "7" 
  |        |        `--leaf "8" 
  |        `--[dendrogram w/ 2 branches and 6 members at h = 1.37]
  |           |--[dendrogram w/ 2 branches and 4 members at h = 0.79]
  |           |  |--leaf "13" 
  |           |  `--[dendrogram w/ 2 branches and 3 members at h = 0.51]
  |           |     |--leaf "10" 
  |           |     `--[dendrogram w/ 2 branches and 2 members at h = 0.387]
  |           |        |--leaf "9" 
  |           |        `--leaf "11" 
  |           `--[dendrogram w/ 2 branches and 2 members at h = 0.79]
  |              |--leaf "4" 
  |              `--leaf "5" 
  `--[dendrogram w/ 2 branches and 42 members at h = 86]
     |--[dendrogram w/ 2 branches and 17 members at h = 13.3]
     |  |--[dendrogram w/ 2 branches and 6 members at h = 1.72]
     |  |  |--[dendrogram w/ 2 branches and 3 members at h = 0.526]
     |  |  |  |--leaf "68" 
     |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.193]
     |  |  |     |--leaf "65" 
     |  |  |     `--leaf "66" 
     |  |  `--[dendrogram w/ 2 branches and 3 members at h = 0.77]
     |  |     |--leaf "64" 
     |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.4]
     |  |        |--leaf "67" 
     |  |        `--leaf "69" 
     |  `--[dendrogram w/ 2 branches and 11 members at h = 6.27]
     |     |--[dendrogram w/ 2 branches and 4 members at h = 0.993]
     |     |  |--[dendrogram w/ 2 branches and 2 members at h = 0.318]
     |     |  |  |--leaf "55" 
     |     |  |  `--leaf "56" 
     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.53]
     |     |     |--leaf "53" 
     |     |     `--leaf "54" 
     |     `--[dendrogram w/ 2 branches and 7 members at h = 2.96]
     |        |--[dendrogram w/ 2 branches and 3 members at h = 0.775]
     |        |  |--leaf "58" 
     |        |  `--[dendrogram w/ 2 branches and 2 members at h = 0.469]
     |        |     |--leaf "57" 
     |        |     `--leaf "60" 
     |        `--[dendrogram w/ 2 branches and 4 members at h = 1.65]
     |           |--[dendrogram w/ 2 branches and 2 members at h = 0.132]
     |           |  |--leaf "62" 
     |           |  `--leaf "63" 
     |           `--[dendrogram w/ 2 branches and 2 members at h = 0.428]
     |              |--leaf "59" 
     |              `--leaf "61" 
     `--[dendrogram w/ 2 branches and 25 members at h = 45.7]
        |--[dendrogram w/ 2 branches and 11 members at h = 5.57]
        |  |--[dendrogram w/ 2 branches and 4 members at h = 1.29]
        |  |  |--leaf "28" 
        |  |  `--[dendrogram w/ 2 branches and 3 members at h = 0.582]
        |  |     |--leaf "31" 
        |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.402]
        |  |        |--leaf "29" 
        |  |        `--leaf "30" 
        |  `--[dendrogram w/ 2 branches and 7 members at h = 2.78]
        |     |--[dendrogram w/ 2 branches and 4 members at h = 0.663]
        |     |  |--leaf "37" 
        |     |  `--[dendrogram w/ 2 branches and 3 members at h = 0.334]
        |     |     |--leaf "32" 
        |     |     `--[dendrogram w/ 2 branches and 2 members at h = 0.299]
        |     |        |--leaf "33" 
        |     |        `--leaf "36" 
        |     `--[dendrogram w/ 2 branches and 3 members at h = 1.58]
        |        |--leaf "38" 
        |        `--[dendrogram w/ 2 branches and 2 members at h = 0.74]
        |           |--leaf "34" 
        |           `--leaf "35" 
        `--[dendrogram w/ 2 branches and 14 members at h = 10.0]
           |--[dendrogram w/ 2 branches and 4 members at h = 1.21]
           |  |--leaf "39" 
           |  `--[dendrogram w/ 2 branches and 3 members at h = 0.982]
           |     |--leaf "41" 
           |     `--[dendrogram w/ 2 branches and 2 members at h = 0.701]
           |        |--leaf "40" 
           |        `--leaf "42" 
           `--[dendrogram w/ 2 branches and 10 members at h = 4.11]
              |--[dendrogram w/ 2 branches and 3 members at h = 1.37]
              |  |--leaf "52" 
              |  `--[dendrogram w/ 2 branches and 2 members at h = 0.7]
              |     |--leaf "50" 
              |     `--leaf "51" 
              `--[dendrogram w/ 2 branches and 7 members at h = 2.34]
                 |--[dendrogram w/ 2 branches and 2 members at h = 1.00]
                 |  |--leaf "45" 
                 |  `--leaf "46" 
                 `--[dendrogram w/ 2 branches and 5 members at h = 1.07]
                    |--[dendrogram w/ 2 branches and 2 members at h = 0.337]
                    |  |--leaf "43" 
                    |  `--leaf "44" 
                    `--[dendrogram w/ 2 branches and 3 members at h = 0.488]
                       |--leaf "48" 
                       `--[dendrogram w/ 2 branches and 2 members at h = 0.224]
                          |--leaf "47" 
                          `--leaf "49" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/14dgd1194257576.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2i8dv1194257577.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> load(file='/var/www/html/rcomp/createtable')
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3s5go1194257577.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4jihx1194257578.tab") 
+ }
> 
> system("convert tmp/14dgd1194257576.ps tmp/14dgd1194257576.png")
> system("convert tmp/2i8dv1194257577.ps tmp/2i8dv1194257577.png")
convert: unable to open image `tmp/2i8dv1194257577.ps': No such file or directory.
convert: missing an image filename `tmp/2i8dv1194257577.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.902   0.203   1.020