R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(96.8
+ ,96.9
+ ,96.7
+ ,95.4
+ ,96.8
+ ,91.2
+ ,98.0
+ ,88.0
+ ,101.2
+ ,87.0
+ ,97.1
+ ,97.9
+ ,96.7
+ ,101.5
+ ,96.3
+ ,104.9
+ ,100.9
+ ,106.8
+ ,101.9
+ ,107.1
+ ,110.9
+ ,103.9
+ ,114.3
+ ,101.7
+ ,115.2
+ ,104.8
+ ,103.1
+ ,105.7
+ ,100.1
+ ,106.1
+ ,94.1
+ ,102.5
+ ,90.1
+ ,97.4
+ ,89.5
+ ,95.8
+ ,104.3
+ ,91.6
+ ,96.5
+ ,91.3
+ ,99.3
+ ,102.6
+ ,97.7
+ ,99.2
+ ,97.6
+ ,101.1
+ ,101.7
+ ,100.8
+ ,102.2
+ ,100.7
+ ,104.0
+ ,102.8
+ ,104.6
+ ,105.3
+ ,104.6
+ ,99.0
+ ,105.4
+ ,95.9
+ ,111.1
+ ,94.7
+ ,105.4
+ ,110.9
+ ,102.7
+ ,114.9
+ ,101.8
+ ,107.1
+ ,113.5
+ ,104.0
+ ,124.5
+ ,102.5
+ ,110.7
+ ,116.3
+ ,107.9
+ ,142.2
+ ,105.3
+ ,117.1
+ ,124.0
+ ,113.8
+ ,159.7
+ ,110.3
+ ,118.7
+ ,128.8
+ ,113.8
+ ,165.2
+ ,109.8
+ ,126.5
+ ,133.5
+ ,123.1
+ ,198.6
+ ,117.3
+ ,127.5
+ ,132.6
+ ,125.1
+ ,207.8
+ ,118.8
+ ,134.6
+ ,128.4
+ ,137.6
+ ,219.6
+ ,131.3
+ ,131.8
+ ,127.3
+ ,134.0
+ ,239.6
+ ,125.9
+ ,135.9
+ ,126.7
+ ,140.3
+ ,235.3
+ ,133.1
+ ,142.7
+ ,123.3
+ ,152.1
+ ,218.5
+ ,147.0
+ ,141.7
+ ,123.2
+ ,150.6
+ ,213.8
+ ,145.8
+ ,153.4
+ ,124.4
+ ,167.3
+ ,205.5
+ ,164.4
+ ,145.0
+ ,128.2
+ ,153.2
+ ,198.4
+ ,149.8
+ ,137.7
+ ,128.7
+ ,142.0
+ ,198.5
+ ,137.7
+ ,148.3
+ ,135.7
+ ,154.4
+ ,190.2
+ ,151.7
+ ,152.2
+ ,139.0
+ ,158.5
+ ,180.7
+ ,156.8
+ ,169.4
+ ,145.4
+ ,180.9
+ ,193.6
+ ,180.0
+ ,168.6
+ ,142.4
+ ,181.3
+ ,192.8
+ ,180.4
+ ,161.1
+ ,137.7
+ ,172.4
+ ,195.5
+ ,170.4
+ ,174.1
+ ,137.0
+ ,192.0
+ ,197.2
+ ,191.6
+ ,179.0
+ ,137.1
+ ,199.3
+ ,196.9
+ ,199.5
+ ,190.6
+ ,139.3
+ ,215.4
+ ,178.9
+ ,218.2
+ ,190.0
+ ,139.6
+ ,214.3
+ ,172.4
+ ,217.5
+ ,181.6
+ ,140.4
+ ,201.5
+ ,156.4
+ ,205.0
+ ,174.8
+ ,142.3
+ ,190.5
+ ,143.7
+ ,194.0
+ ,180.5
+ ,148.3
+ ,196.0
+ ,153.6
+ ,199.3
+ ,196.8
+ ,157.7
+ ,215.7
+ ,168.8
+ ,219.3
+ ,193.8
+ ,161.6
+ ,209.4
+ ,185.8
+ ,211.1
+ ,197.0
+ ,161.7
+ ,214.1
+ ,199.9
+ ,215.2
+ ,216.3
+ ,171.8
+ ,237.8
+ ,205.4
+ ,240.2
+ ,221.4
+ ,185.1
+ ,239.0
+ ,197.5
+ ,242.2
+ ,217.9
+ ,176.7
+ ,237.8
+ ,199.6
+ ,240.7
+ ,229.7
+ ,184.4
+ ,251.5
+ ,200.5
+ ,255.4
+ ,227.4
+ ,183.0
+ ,248.8
+ ,193.7
+ ,253.0
+ ,204.2
+ ,180.9
+ ,215.4
+ ,179.6
+ ,218.2
+ ,196.6
+ ,187.0
+ ,201.2
+ ,169.1
+ ,203.7
+ ,198.8
+ ,189.9
+ ,203.1
+ ,169.8
+ ,205.6
+ ,207.5
+ ,193.8
+ ,214.2
+ ,195.5
+ ,215.6
+ ,190.7
+ ,194.5
+ ,188.9
+ ,194.8
+ ,188.5
+ ,201.6
+ ,198.7
+ ,203.0
+ ,204.5
+ ,202.9
+ ,210.5
+ ,204.7
+ ,213.3
+ ,203.8
+ ,214.0
+ ,223.5
+ ,213.2
+ ,228.5
+ ,204.8
+ ,230.3
+ ,223.8
+ ,214.7
+ ,228.2
+ ,204.9
+ ,230.0
+ ,231.2
+ ,211.0
+ ,240.9
+ ,240.0
+ ,241.0
+ ,244.0
+ ,213.2
+ ,258.8
+ ,248.3
+ ,259.6
+ ,234.7
+ ,206.3
+ ,248.5
+ ,258.4
+ ,247.8
+ ,250.2
+ ,210.8
+ ,269.2
+ ,254.9
+ ,270.3)
+ ,dim=c(5
+ ,60)
+ ,dimnames=list(c('1'
+ ,'2'
+ ,'3'
+ ,'4'
+ ,'5
')
+ ,1:60))
>  y <- array(NA,dim=c(5,60),dimnames=list(c('1','2','3','4','5
'),1:60))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 60 members at h = 3414]
  |--[dendrogram w/ 2 branches and 32 members at h = 765]
  |  |--[dendrogram w/ 2 branches and 11 members at h = 214]
  |  |  |--[dendrogram w/ 2 branches and 4 members at h = 47.3]
  |  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 17.6]
  |  |  |  |  |--leaf "58" 
  |  |  |  |  `--leaf "60" 
  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 21.8]
  |  |  |     |--leaf "57" 
  |  |  |     `--leaf "59" 
  |  |  `--[dendrogram w/ 2 branches and 7 members at h = 98.8]
  |  |     |--[dendrogram w/ 2 branches and 2 members at h = 1.59]
  |  |     |  |--leaf "55" 
  |  |     |  `--leaf "56" 
  |  |     `--[dendrogram w/ 2 branches and 5 members at h = 40.5]
  |  |        |--[dendrogram w/ 2 branches and 2 members at h = 8.16]
  |  |        |  |--leaf "46" 
  |  |        |  `--leaf "47" 
  |  |        `--[dendrogram w/ 2 branches and 3 members at h = 14.7]
  |  |           |--leaf "44" 
  |  |           `--[dendrogram w/ 2 branches and 2 members at h = 7.78]
  |  |              |--leaf "43" 
  |  |              `--leaf "45" 
  |  `--[dendrogram w/ 2 branches and 21 members at h = 302]
  |     |--[dendrogram w/ 2 branches and 6 members at h = 61.7]
  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 11.8]
  |     |  |  |--leaf "33" 
  |     |  |  `--leaf "34" 
  |     |  `--[dendrogram w/ 2 branches and 4 members at h = 40]
  |     |     |--[dendrogram w/ 2 branches and 2 members at h = 3.26]
  |     |     |  |--leaf "30" 
  |     |     |  `--leaf "31" 
  |     |     `--[dendrogram w/ 2 branches and 2 members at h = 20.0]
  |     |        |--leaf "25" 
  |     |        `--leaf "32" 
  |     `--[dendrogram w/ 2 branches and 15 members at h = 214]
  |        |--[dendrogram w/ 2 branches and 7 members at h = 68.8]
  |        |  |--[dendrogram w/ 2 branches and 3 members at h = 30.2]
  |        |  |  |--leaf "48" 
  |        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 4.58]
  |        |  |     |--leaf "49" 
  |        |  |     `--leaf "50" 
  |        |  `--[dendrogram w/ 2 branches and 4 members at h = 45.4]
  |        |     |--leaf "52" 
  |        |     `--[dendrogram w/ 2 branches and 3 members at h = 21.4]
  |        |        |--leaf "53" 
  |        |        `--[dendrogram w/ 2 branches and 2 members at h = 14.1]
  |        |           |--leaf "51" 
  |        |           `--leaf "54" 
  |        `--[dendrogram w/ 2 branches and 8 members at h = 112]
  |           |--[dendrogram w/ 2 branches and 3 members at h = 20.3]
  |           |  |--leaf "38" 
  |           |  `--[dendrogram w/ 2 branches and 2 members at h = 11.6]
  |           |     |--leaf "37" 
  |           |     `--leaf "39" 
  |           `--[dendrogram w/ 2 branches and 5 members at h = 46.6]
  |              |--[dendrogram w/ 2 branches and 2 members at h = 15.7]
  |              |  |--leaf "41" 
  |              |  `--leaf "42" 
  |              `--[dendrogram w/ 2 branches and 3 members at h = 25.6]
  |                 |--leaf "40" 
  |                 `--[dendrogram w/ 2 branches and 2 members at h = 6.66]
  |                    |--leaf "35" 
  |                    `--leaf "36" 
  `--[dendrogram w/ 2 branches and 28 members at h = 1221]
     |--[dendrogram w/ 2 branches and 15 members at h = 97]
     |  |--[dendrogram w/ 2 branches and 8 members at h = 31.0]
     |  |  |--[dendrogram w/ 2 branches and 3 members at h = 10.8]
     |  |  |  |--leaf "2" 
     |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 3.53]
     |  |  |     |--leaf "7" 
     |  |  |     `--leaf "8" 
     |  |  `--[dendrogram w/ 2 branches and 5 members at h = 17.9]
     |  |     |--leaf "12" 
     |  |     `--[dendrogram w/ 2 branches and 4 members at h = 10.3]
     |  |        |--[dendrogram w/ 2 branches and 2 members at h = 5.68]
     |  |        |  |--leaf "9" 
     |  |        |  `--leaf "10" 
     |  |        `--[dendrogram w/ 2 branches and 2 members at h = 6.21]
     |  |           |--leaf "1" 
     |  |           `--leaf "3" 
     |  `--[dendrogram w/ 2 branches and 7 members at h = 65.6]
     |     |--[dendrogram w/ 2 branches and 4 members at h = 19.3]
     |     |  |--leaf "5" 
     |     |  `--[dendrogram w/ 2 branches and 3 members at h = 6.12]
     |     |     |--leaf "11" 
     |     |     `--[dendrogram w/ 2 branches and 2 members at h = 3.21]
     |     |        |--leaf "4" 
     |     |        `--leaf "6" 
     |     `--[dendrogram w/ 2 branches and 3 members at h = 28.5]
     |        |--leaf "15" 
     |        `--[dendrogram w/ 2 branches and 2 members at h = 10.2]
     |           |--leaf "13" 
     |           `--leaf "14" 
     `--[dendrogram w/ 2 branches and 13 members at h = 172]
        |--[dendrogram w/ 2 branches and 2 members at h = 7.49]
        |  |--leaf "16" 
        |  `--leaf "17" 
        `--[dendrogram w/ 2 branches and 11 members at h = 127]
           |--[dendrogram w/ 2 branches and 6 members at h = 53.7]
           |  |--[dendrogram w/ 2 branches and 3 members at h = 20.2]
           |  |  |--leaf "29" 
           |  |  `--[dendrogram w/ 2 branches and 2 members at h = 11.8]
           |  |     |--leaf "26" 
           |  |     `--leaf "28" 
           |  `--[dendrogram w/ 2 branches and 3 members at h = 28.8]
           |     |--leaf "27" 
           |     `--[dendrogram w/ 2 branches and 2 members at h = 5.18]
           |        |--leaf "23" 
           |        `--leaf "24" 
           `--[dendrogram w/ 2 branches and 5 members at h = 66.4]
              |--[dendrogram w/ 2 branches and 2 members at h = 9.63]
              |  |--leaf "18" 
              |  `--leaf "19" 
              `--[dendrogram w/ 2 branches and 3 members at h = 21.2]
                 |--leaf "20" 
                 `--[dendrogram w/ 2 branches and 2 members at h = 11.3]
                    |--leaf "21" 
                    `--leaf "22" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1xk1r1194257173.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2tf3v1194257173.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> load(file='/var/www/html/rcomp/createtable')
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3h8q51194257174.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4zgm81194257174.tab") 
+ }
> 
> system("convert tmp/1xk1r1194257173.ps tmp/1xk1r1194257173.png")
> system("convert tmp/2tf3v1194257173.ps tmp/2tf3v1194257173.png")
convert: unable to open image `tmp/2tf3v1194257173.ps': No such file or directory.
convert: missing an image filename `tmp/2tf3v1194257173.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.871   0.215   0.956