R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(513
+ ,140
+ ,373
+ ,96
+ ,87
+ ,503
+ ,132
+ ,371
+ ,86
+ ,75
+ ,471
+ ,117
+ ,354
+ ,82
+ ,74
+ ,471
+ ,114
+ ,357
+ ,92
+ ,91
+ ,476
+ ,113
+ ,363
+ ,99
+ ,101
+ ,475
+ ,110
+ ,364
+ ,101
+ ,103
+ ,470
+ ,107
+ ,363
+ ,102
+ ,106
+ ,461
+ ,103
+ ,358
+ ,100
+ ,102
+ ,455
+ ,98
+ ,357
+ ,101
+ ,105
+ ,456
+ ,98
+ ,357
+ ,100
+ ,105
+ ,517
+ ,137
+ ,380
+ ,99
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+ ,525
+ ,148
+ ,378
+ ,97
+ ,95
+ ,523
+ ,147
+ ,376
+ ,97
+ ,96
+ ,519
+ ,139
+ ,380
+ ,97
+ ,98
+ ,509
+ ,130
+ ,379
+ ,96
+ ,99
+ ,512
+ ,128
+ ,384
+ ,92
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+ ,519
+ ,127
+ ,392
+ ,91
+ ,84
+ ,517
+ ,123
+ ,394
+ ,87
+ ,81
+ ,510
+ ,118
+ ,392
+ ,82
+ ,72
+ ,509
+ ,114
+ ,396
+ ,89
+ ,89
+ ,501
+ ,108
+ ,392
+ ,91
+ ,96
+ ,507
+ ,111
+ ,396
+ ,90
+ ,91
+ ,569
+ ,151
+ ,419
+ ,87
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+ ,580
+ ,159
+ ,421
+ ,89
+ ,90
+ ,578
+ ,158
+ ,420
+ ,95
+ ,98
+ ,565
+ ,148
+ ,418
+ ,85
+ ,87
+ ,547
+ ,138
+ ,410
+ ,94
+ ,100
+ ,555
+ ,137
+ ,418
+ ,94
+ ,100
+ ,562
+ ,136
+ ,426
+ ,97
+ ,104
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+ ,133
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+ ,594
+ ,153
+ ,441
+ ,96
+ ,97
+ ,611
+ ,162
+ ,449
+ ,98
+ ,101
+ ,613
+ ,161
+ ,452
+ ,98
+ ,100
+ ,611
+ ,149
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+ ,94
+ ,93
+ ,594
+ ,139
+ ,455
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+ ,130
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+ ,96
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+ ,584
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+ ,102
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+ ,567
+ ,112
+ ,455
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+ ,85
+ ,569
+ ,113
+ ,456
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+ ,157
+ ,471
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+ ,125
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+ ,97
+ ,590
+ ,123
+ ,467
+ ,98
+ ,96
+ ,580
+ ,117
+ ,463
+ ,95
+ ,93
+ ,574
+ ,114
+ ,460
+ ,96
+ ,93
+ ,573
+ ,111
+ ,462
+ ,94
+ ,93
+ ,573
+ ,112
+ ,461
+ ,98
+ ,97
+ ,620
+ ,144
+ ,476
+ ,98
+ ,100
+ ,626
+ ,150
+ ,476
+ ,98
+ ,95
+ ,620
+ ,149
+ ,471
+ ,98
+ ,97
+ ,588
+ ,134
+ ,453
+ ,102
+ ,103
+ ,566
+ ,123
+ ,443
+ ,101
+ ,102
+ ,557
+ ,116
+ ,442
+ ,92
+ ,93
+ ,561
+ ,117
+ ,444
+ ,99
+ ,99
+ ,549
+ ,111
+ ,438
+ ,101
+ ,100
+ ,532
+ ,105
+ ,427
+ ,99
+ ,97
+ ,526
+ ,102
+ ,424
+ ,102
+ ,104
+ ,511
+ ,95
+ ,416
+ ,102
+ ,102
+ ,499
+ ,93
+ ,406
+ ,101
+ ,103
+ ,555
+ ,124
+ ,431
+ ,99
+ ,100
+ ,565
+ ,130
+ ,434
+ ,98
+ ,90
+ ,542
+ ,124
+ ,418
+ ,98
+ ,90)
+ ,dim=c(5
+ ,73)
+ ,dimnames=list(c('Totaal'
+ ,'-25'
+ ,'25'
+ ,'CV'
+ ,'Algemeen
')
+ ,1:73))
>  y <- array(NA,dim=c(5,73),dimnames=list(c('Totaal','-25','25','CV','Algemeen
'),1:73))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 73 members at h = 2163]
  |--[dendrogram w/ 2 branches and 24 members at h = 410]
  |  |--[dendrogram w/ 2 branches and 8 members at h = 58.3]
  |  |  |--[dendrogram w/ 2 branches and 3 members at h = 10.3]
  |  |  |  |--leaf "8" 
  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 1.41]
  |  |  |     |--leaf "9" 
  |  |  |     `--leaf "10" 
  |  |  `--[dendrogram w/ 2 branches and 5 members at h = 47.4]
  |  |     |--[dendrogram w/ 2 branches and 3 members at h = 9.88]
  |  |     |  |--leaf "7" 
  |  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 4.36]
  |  |     |     |--leaf "5" 
  |  |     |     `--leaf "6" 
  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 20.2]
  |  |        |--leaf "3" 
  |  |        `--leaf "4" 
  |  `--[dendrogram w/ 2 branches and 16 members at h = 146]
  |     |--[dendrogram w/ 2 branches and 7 members at h = 33.3]
  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 3.16]
  |     |  |  |--leaf "12" 
  |     |  |  `--leaf "13" 
  |     |  `--[dendrogram w/ 2 branches and 5 members at h = 21.0]
  |     |     |--[dendrogram w/ 2 branches and 2 members at h = 10.1]
  |     |     |  |--leaf "15" 
  |     |     |  `--leaf "16" 
  |     |     `--[dendrogram w/ 2 branches and 3 members at h = 18.9]
  |     |        |--leaf "1" 
  |     |        `--[dendrogram w/ 2 branches and 2 members at h = 4]
  |     |           |--leaf "11" 
  |     |           `--leaf "14" 
  |     `--[dendrogram w/ 2 branches and 9 members at h = 88.6]
  |        |--[dendrogram w/ 2 branches and 2 members at h = 15.8]
  |        |  |--leaf "69" 
  |        |  `--leaf "70" 
  |        `--[dendrogram w/ 2 branches and 7 members at h = 51.5]
  |           |--[dendrogram w/ 2 branches and 3 members at h = 13.5]
  |           |  |--leaf "21" 
  |           |  `--[dendrogram w/ 2 branches and 2 members at h = 4.24]
  |           |     |--leaf "20" 
  |           |     `--leaf "22" 
  |           `--[dendrogram w/ 2 branches and 4 members at h = 35.5]
  |              |--leaf "2" 
  |              `--[dendrogram w/ 2 branches and 3 members at h = 19.8]
  |                 |--leaf "19" 
  |                 `--[dendrogram w/ 2 branches and 2 members at h = 7]
  |                    |--leaf "17" 
  |                    `--leaf "18" 
  `--[dendrogram w/ 2 branches and 49 members at h = 742]
     |--[dendrogram w/ 2 branches and 21 members at h = 180]
     |  |--[dendrogram w/ 2 branches and 4 members at h = 28.5]
     |  |  |--[dendrogram w/ 2 branches and 2 members at h = 5.57]
     |  |  |  |--leaf "23" 
     |  |  |  `--leaf "26" 
     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 10.3]
     |  |     |--leaf "24" 
     |  |     `--leaf "25" 
     |  `--[dendrogram w/ 2 branches and 17 members at h = 105]
     |     |--[dendrogram w/ 2 branches and 6 members at h = 37.6]
     |     |  |--[dendrogram w/ 2 branches and 2 members at h = 10.6]
     |     |  |  |--leaf "67" 
     |     |  |  `--leaf "68" 
     |     |  `--[dendrogram w/ 2 branches and 4 members at h = 19.7]
     |     |     |--leaf "73" 
     |     |     `--[dendrogram w/ 2 branches and 3 members at h = 12.7]
     |     |        |--leaf "33" 
     |     |        `--[dendrogram w/ 2 branches and 2 members at h = 7.62]
     |     |           |--leaf "32" 
     |     |           `--leaf "34" 
     |     `--[dendrogram w/ 2 branches and 11 members at h = 66.8]
     |        |--[dendrogram w/ 2 branches and 4 members at h = 19.9]
     |        |  |--[dendrogram w/ 2 branches and 2 members at h = 8.66]
     |        |  |  |--leaf "63" 
     |        |  |  `--leaf "65" 
     |        |  `--[dendrogram w/ 2 branches and 2 members at h = 15.3]
     |        |     |--leaf "64" 
     |        |     `--leaf "66" 
     |        `--[dendrogram w/ 2 branches and 7 members at h = 39.1]
     |           |--[dendrogram w/ 2 branches and 2 members at h = 11.4]
     |           |  |--leaf "27" 
     |           |  `--leaf "28" 
     |           `--[dendrogram w/ 2 branches and 5 members at h = 22.1]
     |              |--leaf "72" 
     |              `--[dendrogram w/ 2 branches and 4 members at h = 20.2]
     |                 |--[dendrogram w/ 2 branches and 2 members at h = 5.2]
     |                 |  |--leaf "29" 
     |                 |  `--leaf "30" 
     |                 `--[dendrogram w/ 2 branches and 2 members at h = 5.83]
     |                    |--leaf "31" 
     |                    `--leaf "71" 
     `--[dendrogram w/ 2 branches and 28 members at h = 365]
        |--[dendrogram w/ 2 branches and 11 members at h = 89.2]
        |  |--[dendrogram w/ 2 branches and 3 members at h = 28.7]
        |  |  |--leaf "35" 
        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 3.87]
        |  |     |--leaf "36" 
        |  |     `--leaf "37" 
        |  `--[dendrogram w/ 2 branches and 8 members at h = 44.5]
        |     |--[dendrogram w/ 2 branches and 3 members at h = 12.8]
        |     |  |--leaf "47" 
        |     |  `--[dendrogram w/ 2 branches and 2 members at h = 10.9]
        |     |     |--leaf "48" 
        |     |     `--leaf "49" 
        |     `--[dendrogram w/ 2 branches and 5 members at h = 32.3]
        |        |--[dendrogram w/ 2 branches and 2 members at h = 5.2]
        |        |  |--leaf "38" 
        |        |  `--leaf "50" 
        |        `--[dendrogram w/ 2 branches and 3 members at h = 9.42]
        |           |--leaf "60" 
        |           `--[dendrogram w/ 2 branches and 2 members at h = 7.68]
        |              |--leaf "59" 
        |              `--leaf "61" 
        `--[dendrogram w/ 2 branches and 17 members at h = 142]
           |--[dendrogram w/ 2 branches and 7 members at h = 32.8]
           |  |--[dendrogram w/ 2 branches and 2 members at h = 2.65]
           |  |  |--leaf "45" 
           |  |  `--leaf "46" 
           |  `--[dendrogram w/ 2 branches and 5 members at h = 11.1]
           |     |--leaf "55" 
           |     `--[dendrogram w/ 2 branches and 4 members at h = 8.61]
           |        |--leaf "44" 
           |        `--[dendrogram w/ 2 branches and 3 members at h = 5.87]
           |           |--leaf "58" 
           |           `--[dendrogram w/ 2 branches and 2 members at h = 4.24]
           |              |--leaf "56" 
           |              `--leaf "57" 
           `--[dendrogram w/ 2 branches and 10 members at h = 36.8]
              |--[dendrogram w/ 2 branches and 4 members at h = 12.6]
              |  |--[dendrogram w/ 2 branches and 2 members at h = 5.83]
              |  |  |--leaf "40" 
              |  |  `--leaf "52" 
              |  `--[dendrogram w/ 2 branches and 2 members at h = 6.4]
              |     |--leaf "39" 
              |     `--leaf "51" 
              `--[dendrogram w/ 2 branches and 6 members at h = 22.1]
                 |--leaf "62" 
                 `--[dendrogram w/ 2 branches and 5 members at h = 13.0]
                    |--leaf "43" 
                    `--[dendrogram w/ 2 branches and 4 members at h = 12.0]
                       |--[dendrogram w/ 2 branches and 2 members at h = 4]
                       |  |--leaf "53" 
                       |  `--leaf "54" 
                       `--[dendrogram w/ 2 branches and 2 members at h = 5.48]
                          |--leaf "41" 
                          `--leaf "42" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1bawi1194893335.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2ty0q1194893336.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> load(file='/var/www/html/rcomp/createtable')
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/353641194893336.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4jwss1194893336.tab") 
+ }
> 
> system("convert tmp/1bawi1194893335.ps tmp/1bawi1194893335.png")
> system("convert tmp/2ty0q1194893336.ps tmp/2ty0q1194893336.png")
convert: unable to open image `tmp/2ty0q1194893336.ps': No such file or directory.
convert: missing an image filename `tmp/2ty0q1194893336.png'.
> 
> 
> proc.time()
   user  system elapsed 
  1.784   0.314   1.935