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Type 'q()' to quit R. > x <- c(93.9,97.5,98.1,89.6,98.4,102,99.2,101.8,108.3,106.7,108.2,94.2,95.1,98.1,93.2,94,97.2,95,90.5,91.6,90.5,79.9,74.9,74.3,75.9,77.7,86.9,90.7,91,89.5,92.5,94.1,98.5,96.8,91.2,97.1,104.9,110.9,104.8,94.1,95.8,99.3,101.1,104,99,105.4,107.1,110.7,117.1,118.7,126.5,127.5,134.6,131.8,135.9,142.7,141.7,153.4,145,137.7,148.3,152.2,169.4,168.6,161.1,174.1,179,190.6,190,181.6,174.8,180.5,196.8,193.8,197,216.3,221.4,217.9,229.7,227.4,204.2,196.6,198.8,207.5,190.7) > par9 = '1' > par8 = '2' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '0' > par3 = '1' > par2 = '1.0' > par1 = 'FALSE' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0.8558384 -0.3062146 0.26408579 -0.7519168 0.04393605 -0.01602006 [2,] 0.8532510 -0.3060169 0.26396249 -0.7491615 0.00000000 -0.01156831 [3,] 0.8555948 -0.3077440 0.26491020 -0.7519942 0.00000000 0.00000000 [4,] 0.9446043 -0.2974122 0.25183320 -0.8441767 0.00000000 0.00000000 [5,] -0.6067264 0.0000000 0.03090724 0.8377132 0.00000000 0.00000000 [6,] -0.6191149 0.0000000 0.00000000 0.8536937 0.00000000 0.00000000 [7,] NA NA NA NA NA NA [8,] NA NA NA NA NA NA [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [13,] NA NA NA NA NA NA [14,] NA NA NA NA NA NA [,7] [1,] 0.05143339 [2,] 0.09544826 [3,] 0.09613384 [4,] 0.00000000 [5,] 0.00000000 [6,] 0.00000000 [7,] NA [8,] NA [9,] NA [10,] NA [11,] NA [12,] NA [13,] NA [14,] NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 0.18647 0.04551 0.02166 0.27442 0.98645 0.95644 0.98413 [2,] 0.19220 0.04537 0.02193 0.28028 NA 0.93941 0.53807 [3,] 0.18990 0.04175 0.02079 0.27755 NA NA 0.53783 [4,] 0.00011 0.05297 0.02399 0.00049 NA NA NA [5,] 0.00027 NA 0.79362 0.00000 NA NA NA [6,] 0.00010 NA NA 0.00000 NA NA NA [7,] NA NA NA NA NA NA NA [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.8558 -0.3062 0.2641 -0.7519 0.0439 -0.0160 0.0514 s.e. 0.6421 0.1506 0.1127 0.6831 2.5782 0.2923 2.5772 sigma^2 estimated as 49.05: log likelihood = -282.86, aic = 581.72 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.8558 -0.3062 0.2641 -0.7519 0.0439 -0.0160 0.0514 s.e. 0.6421 0.1506 0.1127 0.6831 2.5782 0.2923 2.5772 sigma^2 estimated as 49.05: log likelihood = -282.86, aic = 581.72 [[3]][[3]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.8533 -0.3060 0.2640 -0.7492 0 -0.0116 0.0954 s.e. 0.6486 0.1505 0.1129 0.6891 0 0.1517 0.1543 sigma^2 estimated as 49.05: log likelihood = -282.86, aic = 579.72 [[3]][[4]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.8556 -0.3077 0.2649 -0.7520 0 0 0.0961 s.e. 0.6471 0.1487 0.1123 0.6878 0 0 0.1554 sigma^2 estimated as 49.05: log likelihood = -282.86, aic = 577.73 [[3]][[5]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.9446 -0.2974 0.2518 -0.8442 0 0 0 s.e. 0.2317 0.1514 0.1094 0.2323 0 0 0 sigma^2 estimated as 49.37: log likelihood = -283.07, aic = 576.14 [[3]][[6]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 -0.6067 0 0.0309 0.8377 0 0 0 s.e. 0.1592 0 0.1177 0.1186 0 0 0 sigma^2 estimated as 49.14: log likelihood = -282.92, aic = 573.85 [[3]][[7]] NULL $aic [1] 581.7203 579.7209 577.7267 576.1389 573.8477 571.9155 Warning messages: 1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 2: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 3: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 4: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 5: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 6: In log(s2) : NaNs produced > postscript(file="/var/www/html/rcomp/tmp/129yg1229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 85 Frequency = 1 [1] 0.09389995 3.44504529 0.03155437 -7.98236809 9.89416279 [6] 0.75843516 -0.97381682 1.43103627 6.74870239 -3.19398050 [11] 3.11196398 -15.87292517 5.73034041 -1.29563116 -1.56174598 [16] -0.89277738 4.33939313 -3.74085668 -2.72594222 0.55410430 [21] -0.82870822 -10.43375274 -2.72505375 -1.31685512 2.66667451 [26] 0.69141197 9.73139170 1.18036117 1.56112259 -2.91009147 [31] 4.41027311 -0.28363119 5.65472021 -3.86015391 -3.44718497 [36] 5.25409041 7.03080689 5.01574695 -6.84375076 -8.90900697 [41] 2.48577652 2.63760122 2.04469645 2.22669597 -5.21400138 [46] 7.67857277 -0.93902390 5.57260372 3.71816494 2.31575064 [51] 6.71956126 -0.09440577 7.73635974 -5.21416988 6.73823783 [56] 3.42342598 0.34443048 10.67801999 -10.45658894 -3.60597174 [61] 8.83005290 3.19386852 17.11630990 -5.03048183 -3.89181833 [66] 11.17817526 3.44806369 11.91627506 -3.94618908 -5.60970663 [71] -7.55570023 7.92231480 13.38133348 -4.10991055 4.64657592 [76] 16.84523841 2.79106218 -2.84270829 11.46132222 -4.89955661 [81] -20.38287209 -4.96575632 1.81984583 9.22733712 -19.01644761 > postscript(file="/var/www/html/rcomp/tmp/262231229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/32gff1229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/4c3ps1229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/5dmni1229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/6ohwl1229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/7t0vb1229860367.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/82dap1229860367.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/9b49z1229860367.tab") > > system("convert tmp/129yg1229860367.ps tmp/129yg1229860367.png") > system("convert tmp/262231229860367.ps tmp/262231229860367.png") > system("convert tmp/32gff1229860367.ps tmp/32gff1229860367.png") > system("convert tmp/4c3ps1229860367.ps tmp/4c3ps1229860367.png") > system("convert tmp/5dmni1229860367.ps tmp/5dmni1229860367.png") > system("convert tmp/6ohwl1229860367.ps tmp/6ohwl1229860367.png") > system("convert tmp/7t0vb1229860367.ps tmp/7t0vb1229860367.png") > > > proc.time() user system elapsed 6.821 1.927 8.006