R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(59.9
+ ,8.6
+ ,13.5
+ ,-12.7
+ ,59.9
+ ,8.6
+ ,16.2
+ ,-2.4
+ ,59.9
+ ,8.5
+ ,17.6
+ ,7.1
+ ,60.9
+ ,8.4
+ ,15.8
+ ,-3.9
+ ,60.9
+ ,8.3
+ ,17.6
+ ,9.5
+ ,60.9
+ ,8.3
+ ,15.2
+ ,5
+ ,61.1
+ ,8.2
+ ,15.9
+ ,-16.1
+ ,61.1
+ ,8.2
+ ,12
+ ,-10.8
+ ,61.1
+ ,8.1
+ ,13.3
+ ,7
+ ,60.2
+ ,8
+ ,14.8
+ ,13.6
+ ,60.2
+ ,8
+ ,16.1
+ ,8.1
+ ,60.2
+ ,7.9
+ ,16.9
+ ,-8.1
+ ,60.1
+ ,7.8
+ ,17.6
+ ,4.9
+ ,60.1
+ ,7.8
+ ,13.9
+ ,-0.8
+ ,60.1
+ ,7.8
+ ,10
+ ,4.3
+ ,59.7
+ ,7.8
+ ,7.6
+ ,4
+ ,59.7
+ ,7.8
+ ,7.1
+ ,1.5
+ ,59.7
+ ,7.8
+ ,8.1
+ ,5.4
+ ,60.5
+ ,7.8
+ ,8.1
+ ,-11.3
+ ,60.5
+ ,7.8
+ ,7.7
+ ,-16.4
+ ,60.5
+ ,7.8
+ ,4
+ ,-2
+ ,59.5
+ ,7.9
+ ,1.4
+ ,8.9
+ ,59.5
+ ,7.9
+ ,0.3
+ ,-7.2
+ ,59.5
+ ,7.9
+ ,-1
+ ,-18
+ ,59.5
+ ,8
+ ,-1.9
+ ,1.3
+ ,59.5
+ ,8
+ ,-1.5
+ ,6.3
+ ,59.5
+ ,8
+ ,-0.2
+ ,-6
+ ,59.7
+ ,8.1
+ ,3.4
+ ,2.8
+ ,59.7
+ ,8.1
+ ,3
+ ,2
+ ,59.7
+ ,8.2
+ ,4.1
+ ,5.1
+ ,60.4
+ ,8.3
+ ,3.4
+ ,-7.6
+ ,60.4
+ ,8.3
+ ,3.2
+ ,-18.6
+ ,60.4
+ ,8.3
+ ,6.1
+ ,5.8
+ ,60
+ ,8.4
+ ,5.8
+ ,20.3
+ ,60
+ ,8.5
+ ,6.2
+ ,0.7
+ ,60
+ ,8.5
+ ,5.8
+ ,-11.2
+ ,59
+ ,8.6
+ ,5.9
+ ,-5.7
+ ,59
+ ,8.6
+ ,6.7
+ ,-0.1
+ ,59
+ ,8.7
+ ,5.9
+ ,3.4
+ ,59.3
+ ,8.6
+ ,3.8
+ ,3.3
+ ,59.3
+ ,8.7
+ ,1.7
+ ,-1.2
+ ,59.3
+ ,8.7
+ ,1.4
+ ,4.2
+ ,59.7
+ ,8.6
+ ,1.8
+ ,-8.8
+ ,59.7
+ ,8.6
+ ,3
+ ,-25.3
+ ,59.7
+ ,8.7
+ ,3.6
+ ,8.5
+ ,60.4
+ ,8.7
+ ,4.8
+ ,14.5
+ ,60.4
+ ,8.7
+ ,4.3
+ ,-3.1
+ ,60.4
+ ,8.7
+ ,4.2
+ ,-10.4
+ ,59.9
+ ,8.7
+ ,2.9
+ ,-2.9
+ ,59.9
+ ,8.7
+ ,4.9
+ ,0.3
+ ,59.9
+ ,8.8
+ ,7.2
+ ,22.6
+ ,60.5
+ ,8.8
+ ,8.7
+ ,15.4
+ ,60.5
+ ,8.8
+ ,9.1
+ ,9
+ ,60.5
+ ,8.8
+ ,8.9
+ ,29.1
+ ,60.4
+ ,8.8
+ ,9
+ ,2.8
+ ,60.4
+ ,8.8
+ ,11.6
+ ,-3.8
+ ,60.4
+ ,8.8
+ ,9.6
+ ,27.7
+ ,60.6
+ ,8.8
+ ,9.1
+ ,28.9
+ ,60.6
+ ,8.9
+ ,9.2
+ ,26.5
+ ,60.6
+ ,8.9
+ ,10.8
+ ,19.8
+ ,60.9
+ ,8.9
+ ,11
+ ,13.2
+ ,60.9
+ ,8.9
+ ,8.5
+ ,14.1
+ ,60.9
+ ,9
+ ,6.5
+ ,34.1
+ ,61
+ ,8.9
+ ,7.2
+ ,30
+ ,61
+ ,8.9
+ ,7.8
+ ,21.8
+ ,61
+ ,8.9
+ ,8.7
+ ,32.1
+ ,61.2
+ ,8.8
+ ,7.8
+ ,5.3
+ ,61.2
+ ,8.8
+ ,7.5
+ ,3
+ ,61.2
+ ,8.8
+ ,7.7
+ ,17.1
+ ,61.2
+ ,8.8
+ ,7.5
+ ,26.3
+ ,61.2
+ ,8.7
+ ,8.3
+ ,38.1
+ ,61.2
+ ,8.6
+ ,7.9
+ ,19.5
+ ,60.3
+ ,8.7
+ ,10.4
+ ,38
+ ,60.3
+ ,8.6
+ ,11.5
+ ,35.5
+ ,60.3
+ ,8.6
+ ,14
+ ,78.6
+ ,60.4
+ ,8.4
+ ,11.9
+ ,62.2
+ ,60.4
+ ,8.4
+ ,11.9
+ ,76.9
+ ,60.4
+ ,8.3
+ ,10.3
+ ,104.9
+ ,61.2
+ ,8.1
+ ,11.3
+ ,32.2
+ ,61.2
+ ,8.1
+ ,9.9
+ ,42.5
+ ,61.2
+ ,8
+ ,8.9
+ ,64.3
+ ,62.1
+ ,8
+ ,9.2
+ ,74.9
+ ,62.1
+ ,7.9
+ ,8.8
+ ,75.4
+ ,62.1
+ ,7.8
+ ,6.7
+ ,43
+ ,61.7
+ ,7.7
+ ,7.1
+ ,58.7
+ ,61.7
+ ,7.6
+ ,6.6
+ ,55.4
+ ,61.7
+ ,7.6
+ ,7.2
+ ,76.6
+ ,61.6
+ ,7.5
+ ,5
+ ,63.3
+ ,61.6
+ ,7.5
+ ,5.3
+ ,78.9
+ ,61.6
+ ,7.4
+ ,6.3
+ ,82.7)
+ ,dim=c(4
+ ,90)
+ ,dimnames=list(c('WG'
+ ,'WL'
+ ,'EA'
+ ,'TI')
+ ,1:90))
>  y <- array(NA,dim=c(4,90),dimnames=list(c('WG','WL','EA','TI'),1:90))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: Wessa, P., (2007), Hierarchical Clustering (v1.0.1) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 90 members at h = 1098]
  |--[dendrogram w/ 2 branches and 13 members at h = 83.3]
  |  |--[dendrogram w/ 2 branches and 5 members at h = 11.2]
  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 3.34]
  |  |  |  |--leaf "85" 
  |  |  |  `--leaf "86" 
  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 6.23]
  |  |     |--leaf "88" 
  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 3.77]
  |  |        |--leaf "76" 
  |  |        `--leaf "81" 
  |  `--[dendrogram w/ 2 branches and 8 members at h = 43.9]
  |     |--leaf "78" 
  |     `--[dendrogram w/ 2 branches and 7 members at h = 12.2]
  |        |--[dendrogram w/ 2 branches and 2 members at h = 3.93]
  |        |  |--leaf "89" 
  |        |  `--leaf "90" 
  |        `--[dendrogram w/ 2 branches and 5 members at h = 10]
  |           |--[dendrogram w/ 2 branches and 2 members at h = 2.71]
  |           |  |--leaf "75" 
  |           |  `--leaf "77" 
  |           `--[dendrogram w/ 2 branches and 3 members at h = 2.95]
  |              |--leaf "87" 
  |              `--[dendrogram w/ 2 branches and 2 members at h = 0.648]
  |                 |--leaf "82" 
  |                 `--leaf "83" 
  `--[dendrogram w/ 2 branches and 77 members at h = 578]
     |--[dendrogram w/ 2 branches and 25 members at h = 124]
     |  |--[dendrogram w/ 2 branches and 11 members at h = 20.5]
     |  |  |--[dendrogram w/ 2 branches and 6 members at h = 6.48]
     |  |  |  |--[dendrogram w/ 2 branches and 3 members at h = 3.15]
     |  |  |  |  |--leaf "34" 
     |  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 1.49]
     |  |  |  |     |--leaf "51" 
     |  |  |  |     `--leaf "65" 
     |  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 3.96]
     |  |  |     |--leaf "60" 
     |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 2.42]
     |  |  |        |--leaf "69" 
     |  |  |        `--leaf "72" 
     |  |  `--[dendrogram w/ 2 branches and 5 members at h = 8.62]
     |  |     |--leaf "10" 
     |  |     `--[dendrogram w/ 2 branches and 4 members at h = 5.85]
     |  |        |--leaf "46" 
     |  |        `--[dendrogram w/ 2 branches and 3 members at h = 3.45]
     |  |           |--leaf "61" 
     |  |           `--[dendrogram w/ 2 branches and 2 members at h = 1.38]
     |  |              |--leaf "52" 
     |  |              `--leaf "62" 
     |  `--[dendrogram w/ 2 branches and 14 members at h = 39.1]
     |     |--[dendrogram w/ 2 branches and 7 members at h = 6.79]
     |     |  |--[dendrogram w/ 2 branches and 3 members at h = 2.55]
     |     |  |  |--leaf "70" 
     |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 1.28]
     |     |  |     |--leaf "57" 
     |     |  |     `--leaf "59" 
     |     |  `--[dendrogram w/ 2 branches and 4 members at h = 3.82]
     |     |     |--[dendrogram w/ 2 branches and 2 members at h = 0.3]
     |     |     |  |--leaf "54" 
     |     |     |  `--leaf "58" 
     |     |     `--[dendrogram w/ 2 branches and 2 members at h = 2.58]
     |     |        |--leaf "64" 
     |     |        `--leaf "66" 
     |     `--[dendrogram w/ 2 branches and 7 members at h = 14.6]
     |        |--[dendrogram w/ 2 branches and 2 members at h = 3.37]
     |        |  |--leaf "80" 
     |        |  `--leaf "84" 
     |        `--[dendrogram w/ 2 branches and 5 members at h = 6.72]
     |           |--[dendrogram w/ 2 branches and 2 members at h = 2.29]
     |           |  |--leaf "71" 
     |           |  `--leaf "73" 
     |           `--[dendrogram w/ 2 branches and 3 members at h = 5.84]
     |              |--leaf "63" 
     |              `--[dendrogram w/ 2 branches and 2 members at h = 3.46]
     |                 |--leaf "74" 
     |                 `--leaf "79" 
     `--[dendrogram w/ 2 branches and 52 members at h = 178]
        |--[dendrogram w/ 2 branches and 20 members at h = 62.5]
        |  |--[dendrogram w/ 2 branches and 9 members at h = 15.2]
        |  |  |--[dendrogram w/ 2 branches and 4 members at h = 4.85]
        |  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 1.30]
        |  |  |  |  |--leaf "23" 
        |  |  |  |  `--leaf "27" 
        |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 2.14]
        |  |  |     |--leaf "31" 
        |  |  |     `--leaf "43" 
        |  |  `--[dendrogram w/ 2 branches and 5 members at h = 5.97]
        |  |     |--leaf "37" 
        |  |     `--[dendrogram w/ 2 branches and 4 members at h = 3.42]
        |  |        |--leaf "41" 
        |  |        `--[dendrogram w/ 2 branches and 3 members at h = 1.71]
        |  |           |--leaf "49" 
        |  |           `--[dendrogram w/ 2 branches and 2 members at h = 1.46]
        |  |              |--leaf "21" 
        |  |              `--leaf "47" 
        |  `--[dendrogram w/ 2 branches and 11 members at h = 34.4]
        |     |--[dendrogram w/ 2 branches and 3 members at h = 8.62]
        |     |  |--leaf "44" 
        |     |  `--[dendrogram w/ 2 branches and 2 members at h = 4.36]
        |     |     |--leaf "24" 
        |     |     `--leaf "32" 
        |     `--[dendrogram w/ 2 branches and 8 members at h = 21]
        |        |--[dendrogram w/ 2 branches and 4 members at h = 7.46]
        |        |  |--leaf "20" 
        |        |  `--[dendrogram w/ 2 branches and 3 members at h = 3.76]
        |        |     |--leaf "19" 
        |        |     `--[dendrogram w/ 2 branches and 2 members at h = 1.84]
        |        |        |--leaf "36" 
        |        |        `--leaf "48" 
        |        `--[dendrogram w/ 2 branches and 4 members at h = 7.5]
        |           |--leaf "12" 
        |           `--[dendrogram w/ 2 branches and 3 members at h = 6.38]
        |              |--leaf "7" 
        |              `--[dendrogram w/ 2 branches and 2 members at h = 2.73]
        |                 |--leaf "1" 
        |                 `--leaf "8" 
        `--[dendrogram w/ 2 branches and 32 members at h = 84.5]
           |--[dendrogram w/ 2 branches and 22 members at h = 25.4]
           |  |--[dendrogram w/ 2 branches and 8 members at h = 6.84]
           |  |  |--leaf "53" 
           |  |  `--[dendrogram w/ 2 branches and 7 members at h = 4.12]
           |  |     |--[dendrogram w/ 2 branches and 2 members at h = 1.71]
           |  |     |  |--leaf "55" 
           |  |     |  `--leaf "68" 
           |  |     `--[dendrogram w/ 2 branches and 5 members at h = 3.48]
           |  |        |--[dendrogram w/ 2 branches and 2 members at h = 2.01]
           |  |        |  |--leaf "33" 
           |  |        |  `--leaf "67" 
           |  |        `--[dendrogram w/ 2 branches and 3 members at h = 2.63]
           |  |           |--leaf "15" 
           |  |           `--[dendrogram w/ 2 branches and 2 members at h = 1.49]
           |  |              |--leaf "16" 
           |  |              `--leaf "18" 
           |  `--[dendrogram w/ 2 branches and 14 members at h = 19.7]
           |     |--[dendrogram w/ 2 branches and 4 members at h = 9.74]
           |     |  |--[dendrogram w/ 2 branches and 2 members at h = 2.38]
           |     |  |  |--leaf "22" 
           |     |  |  `--leaf "45" 
           |     |  `--[dendrogram w/ 2 branches and 2 members at h = 5.02]
           |     |     |--leaf "25" 
           |     |     `--leaf "26" 
           |     `--[dendrogram w/ 2 branches and 10 members at h = 12.2]
           |        |--[dendrogram w/ 2 branches and 4 members at h = 2.23]
           |        |  |--leaf "17" 
           |        |  `--[dendrogram w/ 2 branches and 3 members at h = 1.83]
           |        |     |--leaf "38" 
           |        |     `--[dendrogram w/ 2 branches and 2 members at h = 1.38]
           |        |        |--leaf "35" 
           |        |        `--leaf "50" 
           |        `--[dendrogram w/ 2 branches and 6 members at h = 4.13]
           |           |--[dendrogram w/ 2 branches and 2 members at h = 2.62]
           |           |  |--leaf "30" 
           |           |  `--leaf "39" 
           |           `--[dendrogram w/ 2 branches and 4 members at h = 3.39]
           |              |--leaf "42" 
           |              `--[dendrogram w/ 2 branches and 3 members at h = 1.41]
           |                 |--leaf "40" 
           |                 `--[dendrogram w/ 2 branches and 2 members at h = 0.894]
           |                    |--leaf "28" 
           |                    `--leaf "29" 
           `--[dendrogram w/ 2 branches and 10 members at h = 35.3]
              |--[dendrogram w/ 2 branches and 4 members at h = 5.08]
              |  |--leaf "56" 
              |  `--[dendrogram w/ 2 branches and 3 members at h = 3.84]
              |     |--leaf "14" 
              |     `--[dendrogram w/ 2 branches and 2 members at h = 1.86]
              |        |--leaf "2" 
              |        `--leaf "4" 
              `--[dendrogram w/ 2 branches and 6 members at h = 6]
                 |--[dendrogram w/ 2 branches and 3 members at h = 2.57]
                 |  |--leaf "5" 
                 |  `--[dendrogram w/ 2 branches and 2 members at h = 1.89]
                 |     |--leaf "3" 
                 |     `--leaf "11" 
                 `--[dendrogram w/ 2 branches and 3 members at h = 4.25]
                    |--leaf "9" 
                    `--[dendrogram w/ 2 branches and 2 members at h = 2.58]
                       |--leaf "6" 
                       `--leaf "13" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/17mfj1199648635.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2vibm1199648635.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> load(file='/var/www/html/rcomp/createtable')
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/371ei1199648635.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4zxxc1199648635.tab") 
+ }
> 
> system("convert tmp/17mfj1199648635.ps tmp/17mfj1199648635.png")
> system("convert tmp/2vibm1199648635.ps tmp/2vibm1199648635.png")
convert: unable to open image `tmp/2vibm1199648635.ps': No such file or directory.
convert: missing an image filename `tmp/2vibm1199648635.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.958   0.209   1.070