R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(100
+ ,100.3923915
+ ,100.1469782
+ ,100.2098364
+ ,100.0333368
+ ,99.58139317
+ ,99.39752752
+ ,99.77055523
+ ,100.4100072
+ ,100.1209892
+ ,99.8346969
+ ,99.73194308
+ ,98.73507379
+ ,98.43547688
+ ,98.79352302
+ ,99.60036697
+ ,99.81912681
+ ,99.85207285
+ ,100.0149717
+ ,100.2797274
+ ,100.6265776
+ ,101.1422532
+ ,101.5114142
+ ,102.406627
+ ,102.4606437
+ ,102.0859567
+ ,101.9940832
+ ,101.5227632
+ ,102.4432499
+ ,103.4183267
+ ,103.6255915
+ ,103.2809714
+ ,103.9780125
+ ,103.5614473
+ ,103.4197679
+ ,103.9249756
+ ,103.8076496
+ ,103.0867986
+ ,102.5976695
+ ,102.7651032
+ ,102.604037
+ ,102.8773928
+ ,102.1741797
+ ,101.8458687
+ ,101.6623145
+ ,101.9063562
+ ,102.1328259
+ ,102.7144129
+ ,103.1725678
+ ,102.8857222
+ ,102.9393164
+ ,103.3310852
+ ,103.7529739
+ ,104.1061803
+ ,104.7656382
+ ,104.6198755
+ ,105.0019469
+ ,105.7440415
+ ,105.943346
+ ,106.3702433
+ ,106.6488737
+ ,107.0807262
+ ,106.7678311
+ ,107.2100093
+ ,107.3365011
+ ,107.1157028
+ ,106.8593784
+ ,106.9207067
+ ,106.9469724
+ ,107.2281119
+ ,106.9434167
+ ,106.6173439
+ ,105.9426599
+ ,105.9096294
+ ,106.5152012
+ ,106.8456317
+ ,107.2230793
+ ,107.2840665
+ ,107.8586282
+ ,107.6796042
+ ,108.0663273
+ ,107.8699207
+ ,107.6501918
+ ,108.1600089
+ ,108.5993711
+ ,108.9244395
+ ,109.6604091
+ ,109.8659127
+ ,109.5385803
+ ,109.0590287
+ ,100
+ ,100.3728036
+ ,100.2631251
+ ,100.367031
+ ,100.1846801
+ ,99.77715805
+ ,99.6404484
+ ,100.0144309
+ ,100.6711968
+ ,100.4984384
+ ,100.283058
+ ,100.2372748
+ ,99.49043439
+ ,99.36214414
+ ,99.68271512
+ ,100.4183042
+ ,100.7528364
+ ,100.868608
+ ,101.0440264
+ ,101.3556712
+ ,101.5664504
+ ,101.9280922
+ ,102.3666775
+ ,103.0964279
+ ,103.2246107
+ ,102.9557241
+ ,102.7732406
+ ,102.3837901
+ ,103.1046956
+ ,103.8962307
+ ,104.1200756
+ ,103.7466454
+ ,104.3729699
+ ,103.9445764
+ ,103.7820166
+ ,104.1461223
+ ,104.0058181
+ ,103.3334668
+ ,103.0514655
+ ,103.0796137
+ ,102.8588901
+ ,103.0777974
+ ,102.5006944
+ ,102.2015936
+ ,102.1420163
+ ,102.2814503
+ ,102.4274338
+ ,102.8174718
+ ,103.2182252
+ ,102.950381
+ ,103.1365657
+ ,103.4482345
+ ,103.6809205
+ ,103.9785047
+ ,104.4920792
+ ,104.3850052
+ ,104.7607192
+ ,105.5052723
+ ,105.7729705
+ ,106.1815606
+ ,106.4416895
+ ,106.7381355
+ ,106.5106808
+ ,106.973578
+ ,107.1498448
+ ,106.9277366
+ ,106.726053
+ ,106.7830327
+ ,106.7517596
+ ,106.9601497
+ ,106.8003646
+ ,106.507976
+ ,105.9656565
+ ,105.9512345
+ ,106.4470914
+ ,106.6255458
+ ,106.9873891
+ ,107.0941481
+ ,107.5731776
+ ,107.4594563
+ ,107.815257
+ ,107.6578565
+ ,107.4982245
+ ,107.8930918
+ ,108.2374694
+ ,108.569179
+ ,109.2191526
+ ,109.4038454
+ ,109.0992088
+ ,108.7189329
+ ,100
+ ,100.3532156
+ ,100.379272
+ ,100.5242257
+ ,100.3360234
+ ,99.97292293
+ ,99.88336928
+ ,100.2583066
+ ,100.9323864
+ ,100.8758876
+ ,100.7314192
+ ,100.7426066
+ ,100.245795
+ ,100.2888114
+ ,100.5719072
+ ,101.2362414
+ ,101.6865461
+ ,101.8851432
+ ,102.0730811
+ ,102.431615
+ ,102.5063233
+ ,102.7139311
+ ,103.2219408
+ ,103.7862288
+ ,103.9885777
+ ,103.8254915
+ ,103.552398
+ ,103.244817
+ ,103.7661413
+ ,104.3741347
+ ,104.6145597
+ ,104.2123194
+ ,104.7679272
+ ,104.3277056
+ ,104.1442653
+ ,104.367269
+ ,104.2039865
+ ,103.580135
+ ,103.5052616
+ ,103.3941242
+ ,103.1137432
+ ,103.278202
+ ,102.8272091
+ ,102.5573185
+ ,102.621718
+ ,102.6565444
+ ,102.7220417
+ ,102.9205307
+ ,103.2638825
+ ,103.0150398
+ ,103.333815
+ ,103.5653838
+ ,103.6088671
+ ,103.8508291
+ ,104.2185202
+ ,104.150135
+ ,104.5194915
+ ,105.2665031
+ ,105.6025951
+ ,105.9928778
+ ,106.2345053
+ ,106.3955447
+ ,106.2535305
+ ,106.7371466
+ ,106.9631885
+ ,106.7397703
+ ,106.5927277
+ ,106.6453586
+ ,106.5565469
+ ,106.6921875
+ ,106.6573125
+ ,106.3986082
+ ,105.988653
+ ,105.9928396
+ ,106.3789817
+ ,106.4054599
+ ,106.751699
+ ,106.9042298
+ ,107.287727
+ ,107.2393084
+ ,107.5641867
+ ,107.4457922
+ ,107.3462572
+ ,107.6261746
+ ,107.8755676
+ ,108.2139185
+ ,108.7778961
+ ,108.9417781
+ ,108.6598373
+ ,108.3788371
+ ,100
+ ,100.3336277
+ ,100.4954189
+ ,100.6814203
+ ,100.4873667
+ ,100.1686878
+ ,100.1262902
+ ,100.5021823
+ ,101.1935759
+ ,101.2533368
+ ,101.1797803
+ ,101.2479383
+ ,101.0011556
+ ,101.2154787
+ ,101.4610993
+ ,102.0541787
+ ,102.6202557
+ ,102.9016783
+ ,103.1021357
+ ,103.5075589
+ ,103.4461962
+ ,103.4997701
+ ,104.077204
+ ,104.4760297
+ ,104.7525446
+ ,104.6952589
+ ,104.3315554
+ ,104.1058439
+ ,104.4275869
+ ,104.8520387
+ ,105.1090438
+ ,104.6779933
+ ,105.1628846
+ ,104.7108347
+ ,104.506514
+ ,104.5884158
+ ,104.4021549
+ ,103.8268032
+ ,103.9590576
+ ,103.7086347
+ ,103.3685963
+ ,103.4786067
+ ,103.1537237
+ ,102.9130434
+ ,103.1014198
+ ,103.0316385
+ ,103.0166496
+ ,103.0235896
+ ,103.3095399
+ ,103.0796985
+ ,103.5310643
+ ,103.6825332
+ ,103.5368137
+ ,103.7231535
+ ,103.9449612
+ ,103.9152647
+ ,104.2782638
+ ,105.0277339
+ ,105.4322196
+ ,105.8041951
+ ,106.0273211
+ ,106.052954
+ ,105.9963802
+ ,106.5007153
+ ,106.7765322
+ ,106.5518041
+ ,106.4594024
+ ,106.5076846
+ ,106.3613342
+ ,106.4242253
+ ,106.5142604
+ ,106.2892403
+ ,106.0116495
+ ,106.0344447
+ ,106.3108719
+ ,106.185374
+ ,106.5160088
+ ,106.7143115
+ ,107.0022764
+ ,107.0191605
+ ,107.3131164
+ ,107.2337279
+ ,107.1942898
+ ,107.3592575
+ ,107.5136658
+ ,107.8586579
+ ,108.3366397
+ ,108.4797108
+ ,108.2204658
+ ,108.0387413
+ ,100
+ ,100.3140397
+ ,100.6115658
+ ,100.838615
+ ,100.6387101
+ ,100.3644527
+ ,100.369211
+ ,100.746058
+ ,101.4547655
+ ,101.630786
+ ,101.6281415
+ ,101.75327
+ ,101.7565162
+ ,102.1421459
+ ,102.3502914
+ ,102.8721159
+ ,103.5539653
+ ,103.9182135
+ ,104.1311904
+ ,104.5835027
+ ,104.386069
+ ,104.2856091
+ ,104.9324673
+ ,105.1658306
+ ,105.5165116
+ ,105.5650263
+ ,105.1107128
+ ,104.9668708
+ ,105.0890326
+ ,105.3299427
+ ,105.6035279
+ ,105.1436673
+ ,105.557842
+ ,105.0939638
+ ,104.8687628
+ ,104.8095625
+ ,104.6003233
+ ,104.0734714
+ ,104.4128536
+ ,104.0231452
+ ,103.6234494
+ ,103.6790113
+ ,103.4802384
+ ,103.2687684
+ ,103.5811216
+ ,103.4067327
+ ,103.3112576
+ ,103.1266485
+ ,103.3551972
+ ,103.1443573
+ ,103.7283136
+ ,103.7996825
+ ,103.4647603
+ ,103.5954779
+ ,103.6714023
+ ,103.6803944
+ ,104.037036
+ ,104.7889647
+ ,105.2618442
+ ,105.6155124
+ ,105.8201369
+ ,105.7103633
+ ,105.73923
+ ,106.2642839
+ ,106.5898759
+ ,106.3638378
+ ,106.326077
+ ,106.3700106
+ ,106.1661214
+ ,106.1562631
+ ,106.3712083
+ ,106.1798724
+ ,106.0346461
+ ,106.0760499
+ ,106.2427621
+ ,105.9652881
+ ,106.2803186
+ ,106.5243931
+ ,106.7168258
+ ,106.7990127
+ ,107.0620461
+ ,107.0216636
+ ,107.0423225
+ ,107.0923404
+ ,107.1517641
+ ,107.5033974
+ ,107.8953832
+ ,108.0176435
+ ,107.7810944
+ ,107.6986454)
+ ,dim=c(90
+ ,5)
+ ,dimnames=list(c('1'
+ ,'2'
+ ,'3'
+ ,'4'
+ ,'5'
+ ,'6'
+ ,'7'
+ ,'8'
+ ,'9'
+ ,'10'
+ ,'11'
+ ,'12'
+ ,'13'
+ ,'14'
+ ,'15'
+ ,'16'
+ ,'17'
+ ,'18'
+ ,'19'
+ ,'20'
+ ,'21'
+ ,'22'
+ ,'23'
+ ,'24'
+ ,'25'
+ ,'26'
+ ,'27'
+ ,'28'
+ ,'29'
+ ,'30'
+ ,'31'
+ ,'32'
+ ,'33'
+ ,'34'
+ ,'35'
+ ,'36'
+ ,'37'
+ ,'38'
+ ,'39'
+ ,'40'
+ ,'41'
+ ,'42'
+ ,'43'
+ ,'44'
+ ,'45'
+ ,'46'
+ ,'47'
+ ,'48'
+ ,'49'
+ ,'50'
+ ,'51'
+ ,'52'
+ ,'53'
+ ,'54'
+ ,'55'
+ ,'56'
+ ,'57'
+ ,'58'
+ ,'59'
+ ,'60'
+ ,'61'
+ ,'62'
+ ,'63'
+ ,'64'
+ ,'65'
+ ,'66'
+ ,'67'
+ ,'68'
+ ,'69'
+ ,'70'
+ ,'71'
+ ,'72'
+ ,'73'
+ ,'74'
+ ,'75'
+ ,'76'
+ ,'77'
+ ,'78'
+ ,'79'
+ ,'80'
+ ,'81'
+ ,'82'
+ ,'83'
+ ,'84'
+ ,'85'
+ ,'86'
+ ,'87'
+ ,'88'
+ ,'89'
+ ,'90
')
+ ,1:5))
>  y <- array(NA,dim=c(90,5),dimnames=list(c('1','2','3','4','5','6','7','8','9','10','11','12','13','14','15','16','17','18','19','20','21','22','23','24','25','26','27','28','29','30','31','32','33','34','35','36','37','38','39','40','41','42','43','44','45','46','47','48','49','50','51','52','53','54','55','56','57','58','59','60','61','62','63','64','65','66','67','68','69','70','71','72','73','74','75','76','77','78','79','80','81','82','83','84','85','86','87','88','89','90
'),1:5))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 5 members at h = 18.6]
  |--[dendrogram w/ 2 branches and 2 members at h = 4.3]
  |  |--leaf "1" 
  |  `--leaf "2" 
  `--[dendrogram w/ 2 branches and 3 members at h = 7.17]
     |--leaf "5" 
     `--[dendrogram w/ 2 branches and 2 members at h = 4.3]
        |--leaf "3" 
        `--leaf "4" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1ma9e1225896920.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2i3tw1225896920.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3sjw31225896920.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4fvow1225896920.tab") 
+ }
> 
> system("convert tmp/1ma9e1225896920.ps tmp/1ma9e1225896920.png")
> system("convert tmp/2i3tw1225896920.ps tmp/2i3tw1225896920.png")
convert: unable to open image `tmp/2i3tw1225896920.ps': No such file or directory.
convert: missing an image filename `tmp/2i3tw1225896920.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.693   0.194   0.773