R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(82.7
+ ,97.4
+ ,74.8
+ ,89.3
+ ,88.9
+ ,97
+ ,93.1
+ ,87.5
+ ,105.9
+ ,105.4
+ ,103.9
+ ,106.7
+ ,100.8
+ ,102.7
+ ,83.9
+ ,102.5
+ ,94
+ ,98.1
+ ,77.7
+ ,109.2
+ ,105
+ ,104.5
+ ,141.5
+ ,123.7
+ ,58.5
+ ,87.4
+ ,58.9
+ ,83.1
+ ,87.6
+ ,89.9
+ ,75.3
+ ,97
+ ,113.1
+ ,109.8
+ ,108.4
+ ,119.1
+ ,112.5
+ ,111.7
+ ,91
+ ,125.1
+ ,89.6
+ ,98.6
+ ,84.6
+ ,113.6
+ ,74.5
+ ,96.9
+ ,179.8
+ ,122.4
+ ,82.7
+ ,95.1
+ ,85.6
+ ,92.8
+ ,90.1
+ ,97
+ ,76.4
+ ,97.2
+ ,109.4
+ ,112.7
+ ,109.7
+ ,115.6
+ ,96
+ ,102.9
+ ,99.1
+ ,111.3
+ ,89.2
+ ,97.4
+ ,86.7
+ ,114.6
+ ,109.1
+ ,111.4
+ ,111.4
+ ,137.5
+ ,49.1
+ ,87.4
+ ,78.4
+ ,83.7
+ ,92.9
+ ,96.8
+ ,76.7
+ ,106
+ ,107.7
+ ,114.1
+ ,114.2
+ ,123.4
+ ,103.5
+ ,110.3
+ ,99.7
+ ,126.5
+ ,91.1
+ ,103.9
+ ,94.2
+ ,120
+ ,79.8
+ ,101.6
+ ,173.5
+ ,141.6
+ ,71.9
+ ,94.6
+ ,83.1
+ ,90.5
+ ,82.9
+ ,95.9
+ ,88.9
+ ,96.5
+ ,90.1
+ ,104.7
+ ,132
+ ,113.5
+ ,100.7
+ ,102.8
+ ,122.1
+ ,120.1
+ ,90.7
+ ,98.1
+ ,105.1
+ ,123.9
+ ,108.8
+ ,113.9
+ ,133.7
+ ,144.4
+ ,44.1
+ ,80.9
+ ,63.6
+ ,90.8
+ ,93.6
+ ,95.7
+ ,112.7
+ ,114.2
+ ,107.4
+ ,113.2
+ ,120.5
+ ,138.1
+ ,96.5
+ ,105.9
+ ,112
+ ,135
+ ,93.6
+ ,108.8
+ ,126.2
+ ,131.3
+ ,76.5
+ ,102.3
+ ,209.2
+ ,144.6
+ ,76.7
+ ,99
+ ,91
+ ,101.7
+ ,84
+ ,100.7
+ ,116.7
+ ,108.7
+ ,103.3
+ ,115.5
+ ,137.6
+ ,135.3
+ ,88.5
+ ,100.7
+ ,108.1
+ ,124.3
+ ,99
+ ,109.9
+ ,136.6
+ ,138.3
+ ,105.9
+ ,114.6
+ ,152.3
+ ,158.2
+ ,44.7
+ ,85.4
+ ,114.3
+ ,93.5
+ ,94
+ ,100.5
+ ,120.7
+ ,124.8
+ ,107.1
+ ,114.8
+ ,131.8
+ ,154.4
+ ,104.8
+ ,116.5
+ ,129.4
+ ,152.8
+ ,102.5
+ ,112.9
+ ,187.5
+ ,148.9
+ ,77.7
+ ,102
+ ,189.5
+ ,170.3
+ ,85.2
+ ,106
+ ,109.2
+ ,124.8
+ ,91.3
+ ,105.3
+ ,158.1
+ ,134.4
+ ,106.5
+ ,118.8
+ ,176.2
+ ,154
+ ,92.4
+ ,106.1
+ ,125.5
+ ,147.9
+ ,97.5
+ ,109.3
+ ,155
+ ,168.1
+ ,107
+ ,117.2
+ ,170.3
+ ,175.7
+ ,51.1
+ ,92.5
+ ,99.4
+ ,116.7
+ ,98.6
+ ,104.2
+ ,139.2
+ ,140.8
+ ,102.2
+ ,112.5
+ ,169.6
+ ,164.2
+ ,114.3
+ ,122.4
+ ,136.1
+ ,173.8
+ ,99.4
+ ,113.3
+ ,168.2
+ ,167.8
+ ,72.5
+ ,100
+ ,318.6
+ ,166.6
+ ,92.3
+ ,110.7
+ ,154.1
+ ,135.1
+ ,99.4
+ ,112.8
+ ,161.4
+ ,158.1
+ ,85.9
+ ,109.8
+ ,183.4
+ ,151.8
+ ,109.4
+ ,117.3
+ ,167.2
+ ,168.7
+ ,97.6
+ ,109.1
+ ,205.3
+ ,166.9)
+ ,dim=c(4
+ ,65)
+ ,dimnames=list(c('x1'
+ ,'x2'
+ ,'x3'
+ ,'x4')
+ ,1:65))
>  y <- array(NA,dim=c(4,65),dimnames=list(c('x1','x2','x3','x4'),1:65))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = '10'
> par1 = 'average'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 65 members at h = 202]
  |--leaf "60" 
  `--[dendrogram w/ 2 branches and 64 members at h = 86.2]
     |--[dendrogram w/ 2 branches and 16 members at h = 45.6]
     |  |--[dendrogram w/ 2 branches and 10 members at h = 37.4]
     |  |  |--leaf "58" 
     |  |  `--[dendrogram w/ 2 branches and 9 members at h = 25.7]
     |  |     |--[dendrogram w/ 2 branches and 2 members at h = 14.3]
     |  |     |  |--leaf "47" 
     |  |     |  `--leaf "51" 
     |  |     `--[dendrogram w/ 2 branches and 7 members at h = 17.6]
     |  |        |--[dendrogram w/ 2 branches and 5 members at h = 14]
     |  |        |  |--[dendrogram w/ 2 branches and 2 members at h = 8.02]
     |  |        |  |  |--leaf "54" 
     |  |        |  |  `--leaf "64" 
     |  |        |  `--[dendrogram w/ 2 branches and 3 members at h = 11.2]
     |  |        |     |--leaf "62" 
     |  |        |     `--[dendrogram w/ 2 branches and 2 members at h = 4.84]
     |  |        |        |--leaf "57" 
     |  |        |        `--leaf "59" 
     |  |        `--[dendrogram w/ 2 branches and 2 members at h = 14.3]
     |  |           |--leaf "42" 
     |  |           `--leaf "53" 
     |  `--[dendrogram w/ 2 branches and 6 members at h = 37.7]
     |     |--[dendrogram w/ 2 branches and 3 members at h = 27.8]
     |     |  |--leaf "12" 
     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 17.5]
     |     |     |--leaf "24" 
     |     |     `--leaf "63" 
     |     `--[dendrogram w/ 2 branches and 3 members at h = 32.0]
     |        |--leaf "36" 
     |        `--[dendrogram w/ 2 branches and 2 members at h = 26.6]
     |           |--leaf "48" 
     |           `--leaf "65" 
     `--[dendrogram w/ 2 branches and 48 members at h = 60.3]
        |--[dendrogram w/ 2 branches and 30 members at h = 39.2]
        |  |--[dendrogram w/ 2 branches and 20 members at h = 26.3]
        |  |  |--[dendrogram w/ 2 branches and 7 members at h = 23.5]
        |  |  |  |--[dendrogram w/ 2 branches and 3 members at h = 15.0]
        |  |  |  |  |--leaf "34" 
        |  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 9.45]
        |  |  |  |     |--leaf "18" 
        |  |  |  |     `--leaf "33" 
        |  |  |  `--[dendrogram w/ 2 branches and 4 members at h = 17.5]
        |  |  |     |--leaf "27" 
        |  |  |     `--[dendrogram w/ 2 branches and 3 members at h = 13.5]
        |  |  |        |--leaf "35" 
        |  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 8.62]
        |  |  |           |--leaf "28" 
        |  |  |           `--leaf "44" 
        |  |  `--[dendrogram w/ 2 branches and 13 members at h = 25.7]
        |  |     |--[dendrogram w/ 2 branches and 7 members at h = 18.6]
        |  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 12.8]
        |  |     |  |  |--leaf "32" 
        |  |     |  |  `--leaf "38" 
        |  |     |  `--[dendrogram w/ 2 branches and 5 members at h = 16.4]
        |  |     |     |--[dendrogram w/ 2 branches and 3 members at h = 8.43]
        |  |     |     |  |--leaf "49" 
        |  |     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 4.56]
        |  |     |     |     |--leaf "29" 
        |  |     |     |     `--leaf "40" 
        |  |     |     `--[dendrogram w/ 2 branches and 2 members at h = 11.2]
        |  |     |        |--leaf "16" 
        |  |     |        `--leaf "23" 
        |  |     `--[dendrogram w/ 2 branches and 6 members at h = 19.5]
        |  |        |--[dendrogram w/ 2 branches and 2 members at h = 12.7]
        |  |        |  |--leaf "10" 
        |  |        |  `--leaf "22" 
        |  |        `--[dendrogram w/ 2 branches and 4 members at h = 16.9]
        |  |           |--leaf "3" 
        |  |           `--[dendrogram w/ 2 branches and 3 members at h = 9.63]
        |  |              |--leaf "21" 
        |  |              `--[dendrogram w/ 2 branches and 2 members at h = 6]
        |  |                 |--leaf "9" 
        |  |                 `--leaf "15" 
        |  `--[dendrogram w/ 2 branches and 10 members at h = 27.8]
        |     |--[dendrogram w/ 2 branches and 2 members at h = 6.83]
        |     |  |--leaf "50" 
        |     |  `--leaf "61" 
        |     `--[dendrogram w/ 2 branches and 8 members at h = 21.1]
        |        |--[dendrogram w/ 2 branches and 4 members at h = 17.4]
        |        |  |--leaf "6" 
        |        |  `--[dendrogram w/ 2 branches and 3 members at h = 10.6]
        |        |     |--leaf "39" 
        |        |     `--[dendrogram w/ 2 branches and 2 members at h = 6.76]
        |        |        |--leaf "41" 
        |        |        `--leaf "56" 
        |        `--[dendrogram w/ 2 branches and 4 members at h = 19.0]
        |           |--leaf "52" 
        |           `--[dendrogram w/ 2 branches and 3 members at h = 10.5]
        |              |--leaf "30" 
        |              `--[dendrogram w/ 2 branches and 2 members at h = 4.06]
        |                 |--leaf "45" 
        |                 `--leaf "46" 
        `--[dendrogram w/ 2 branches and 18 members at h = 49.5]
           |--[dendrogram w/ 2 branches and 2 members at h = 29.2]
           |  |--leaf "43" 
           |  `--leaf "55" 
           `--[dendrogram w/ 2 branches and 16 members at h = 46.1]
              |--[dendrogram w/ 2 branches and 3 members at h = 20]
              |  |--leaf "19" 
              |  `--[dendrogram w/ 2 branches and 2 members at h = 18.2]
              |     |--leaf "7" 
              |     `--leaf "31" 
              `--[dendrogram w/ 2 branches and 13 members at h = 22.1]
                 |--[dendrogram w/ 2 branches and 5 members at h = 14.8]
                 |  |--leaf "4" 
                 |  `--[dendrogram w/ 2 branches and 4 members at h = 11.5]
                 |     |--[dendrogram w/ 2 branches and 2 members at h = 2.65]
                 |     |  |--leaf "11" 
                 |     |  `--leaf "17" 
                 |     `--[dendrogram w/ 2 branches and 2 members at h = 3.76]
                 |        |--leaf "5" 
                 |        `--leaf "20" 
                 `--[dendrogram w/ 2 branches and 8 members at h = 17.4]
                    |--[dendrogram w/ 2 branches and 3 members at h = 11.4]
                    |  |--leaf "1" 
                    |  `--[dendrogram w/ 2 branches and 2 members at h = 7.61]
                    |     |--leaf "8" 
                    |     `--leaf "14" 
                    `--[dendrogram w/ 2 branches and 5 members at h = 15.5]
                       |--leaf "2" 
                       `--[dendrogram w/ 2 branches and 4 members at h = 13.5]
                          |--leaf "25" 
                          `--[dendrogram w/ 2 branches and 3 members at h = 10.8]
                             |--leaf "37" 
                             `--[dendrogram w/ 2 branches and 2 members at h = 5.03]
                                |--leaf "13" 
                                `--leaf "26" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1lwku1226336189.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/27drv1226336189.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
--[dendrogram w/ 2 branches and 10 members at h = 202]
  |--leaf 10 
  `--[dendrogram w/ 2 branches and 9 members at h = 84]
     |--[dendrogram w/ 2 branches and 4 members at h = 42]
     |  |--[dendrogram w/ 2 branches and 2 members at h = 31.7]
     |  |  |--leaf 5 
     |  |  `--leaf 6 
     |  `--[dendrogram w/ 2 branches and 2 members at h = 36]
     |     |--leaf 7 
     |     `--leaf 9 
     `--[dendrogram w/ 2 branches and 5 members at h = 57.3]
        |--[dendrogram w/ 2 branches and 2 members at h = 33.8]
        |  |--leaf 2 
        |  `--leaf 3 
        `--[dendrogram w/ 2 branches and 3 members at h = 46.3]
           |--leaf 8 
           `--[dendrogram w/ 2 branches and 2 members at h = 43.7]
              |--leaf 1 
              `--leaf 4 
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3wilg1226336189.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4fghn1226336190.tab") 
+ }
> 
> system("convert tmp/1lwku1226336189.ps tmp/1lwku1226336189.png")
> system("convert tmp/27drv1226336189.ps tmp/27drv1226336189.png")
> 
> 
> proc.time()
   user  system elapsed 
  0.968   0.319   1.097