R version 2.8.0 (2008-10-20)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(0.771
+ ,493.000
+ ,58.972
+ ,54.281
+ ,0.751
+ ,481.000
+ ,59.249
+ ,63.654
+ ,0.766
+ ,462.000
+ ,63.955
+ ,68.918
+ ,0.754
+ ,457.000
+ ,53.785
+ ,58.686
+ ,0.773
+ ,442.000
+ ,52.760
+ ,67.074
+ ,0.781
+ ,439.000
+ ,44.795
+ ,60.183
+ ,0.793
+ ,488.000
+ ,37.348
+ ,54.326
+ ,0.791
+ ,521.000
+ ,32.370
+ ,54.085
+ ,0.878
+ ,501.000
+ ,32.717
+ ,53.564
+ ,0.873
+ ,485.000
+ ,40.974
+ ,60.873
+ ,0.897
+ ,464.000
+ ,33.591
+ ,53.398
+ ,0.885
+ ,460.000
+ ,21.124
+ ,45.164
+ ,0.796
+ ,467.000
+ ,58.608
+ ,59.672
+ ,0.776
+ ,460.000
+ ,46.865
+ ,56.298
+ ,0.788
+ ,448.000
+ ,51.378
+ ,62.361
+ ,0.786
+ ,443.000
+ ,46.235
+ ,56.930
+ ,0.801
+ ,436.000
+ ,47.206
+ ,62.954
+ ,0.811
+ ,431.000
+ ,45.382
+ ,62.431
+ ,0.801
+ ,484.000
+ ,41.227
+ ,52.528
+ ,0.781
+ ,510.000
+ ,33.795
+ ,54.060
+ ,0.778
+ ,513.000
+ ,31.295
+ ,53.093
+ ,0.759
+ ,503.000
+ ,42.625
+ ,52.695
+ ,0.764
+ ,471.000
+ ,33.625
+ ,52.333
+ ,0.754
+ ,471.000
+ ,21.538
+ ,41.747
+ ,0.749
+ ,476.000
+ ,56.421
+ ,58.576
+ ,0.729
+ ,475.000
+ ,53.152
+ ,57.851
+ ,0.740
+ ,470.000
+ ,53.536
+ ,63.721
+ ,0.781
+ ,461.000
+ ,52.408
+ ,63.384
+ ,0.768
+ ,455.000
+ ,41.454
+ ,61.141
+ ,0.754
+ ,456.000
+ ,38.271
+ ,59.231
+ ,0.754
+ ,517.000
+ ,35.306
+ ,63.472
+ ,0.754
+ ,525.000
+ ,26.414
+ ,49.214
+ ,0.779
+ ,523.000
+ ,31.917
+ ,55.816
+ ,0.799
+ ,519.000
+ ,38.030
+ ,61.713
+ ,0.780
+ ,509.000
+ ,27.534
+ ,48.664
+ ,0.769
+ ,512.000
+ ,18.387
+ ,45.351
+ ,0.801
+ ,519.000
+ ,50.556
+ ,57.888
+ ,0.792
+ ,517.000
+ ,43.901
+ ,54.091
+ ,0.852
+ ,510.000
+ ,48.572
+ ,59.098
+ ,0.807
+ ,509.000
+ ,43.899
+ ,58.962
+ ,0.797
+ ,501.000
+ ,37.532
+ ,55.433
+ ,0.783
+ ,507.000
+ ,40.357
+ ,60.403
+ ,0.779
+ ,569.000
+ ,35.489
+ ,60.721
+ ,0.785
+ ,580.000
+ ,29.027
+ ,48.440
+ ,0.817
+ ,578.000
+ ,34.485
+ ,57.981
+ ,0.810
+ ,565.000
+ ,42.598
+ ,60.258
+ ,0.798
+ ,547.000
+ ,30.306
+ ,47.312
+ ,0.795
+ ,555.000
+ ,26.451
+ ,46.980
+ ,0.785
+ ,562.000
+ ,47.460
+ ,54.846
+ ,0.785
+ ,561.000
+ ,50.104
+ ,56.824
+ ,0.785
+ ,555.000
+ ,61.465
+ ,67.744
+ ,0.805
+ ,544.000
+ ,53.726
+ ,62.849
+ ,0.824
+ ,537.000
+ ,39.477
+ ,54.691
+ ,0.819
+ ,543.000
+ ,43.895
+ ,65.461
+ ,0.827
+ ,594.000
+ ,31.481
+ ,53.724
+ ,0.826
+ ,611.000
+ ,29.896
+ ,54.560
+ ,0.829
+ ,613.000
+ ,33.842
+ ,57.722
+ ,0.830
+ ,611.000
+ ,39.120
+ ,55.458
+ ,0.825
+ ,594.000
+ ,33.702
+ ,48.490
+ ,0.817
+ ,595.000
+ ,25.094
+ ,46.362)
+ ,dim=c(4
+ ,60)
+ ,dimnames=list(c('1'
+ ,'2'
+ ,'3'
+ ,'4')
+ ,1:60))
>  y <- array(NA,dim=c(4,60),dimnames=list(c('1','2','3','4'),1:60))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 60 members at h = 1430]
  |--[dendrogram w/ 2 branches and 18 members at h = 256]
  |  |--[dendrogram w/ 2 branches and 10 members at h = 56.5]
  |  |  |--[dendrogram w/ 2 branches and 4 members at h = 26.6]
  |  |  |  |--leaf "51" 
  |  |  |  `--[dendrogram w/ 2 branches and 3 members at h = 17.2]
  |  |  |     |--leaf "53" 
  |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 10.2]
  |  |  |        |--leaf "52" 
  |  |  |        `--leaf "54" 
  |  |  `--[dendrogram w/ 2 branches and 6 members at h = 49.4]
  |  |     |--[dendrogram w/ 2 branches and 2 members at h = 8.89]
  |  |     |  |--leaf "47" 
  |  |     |  `--leaf "48" 
  |  |     `--[dendrogram w/ 2 branches and 4 members at h = 18.8]
  |  |        |--[dendrogram w/ 2 branches and 2 members at h = 3.45]
  |  |        |  |--leaf "49" 
  |  |        |  `--leaf "50" 
  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 8.17]
  |  |           |--leaf "43" 
  |  |           `--leaf "46" 
  |  `--[dendrogram w/ 2 branches and 8 members at h = 65.5]
  |     |--[dendrogram w/ 2 branches and 3 members at h = 8.42]
  |     |  |--leaf "58" 
  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 5.44]
  |     |     |--leaf "56" 
  |     |     `--leaf "57" 
  |     `--[dendrogram w/ 2 branches and 5 members at h = 28.2]
  |        |--[dendrogram w/ 2 branches and 3 members at h = 10.6]
  |        |  |--leaf "60" 
  |        |  `--[dendrogram w/ 2 branches and 2 members at h = 5.69]
  |        |     |--leaf "55" 
  |        |     `--leaf "59" 
  |        `--[dendrogram w/ 2 branches and 2 members at h = 11.2]
  |           |--leaf "44" 
  |           `--leaf "45" 
  `--[dendrogram w/ 2 branches and 42 members at h = 666]
     |--[dendrogram w/ 2 branches and 17 members at h = 52.6]
     |  |--[dendrogram w/ 2 branches and 7 members at h = 31.1]
     |  |  |--[dendrogram w/ 2 branches and 3 members at h = 9.12]
     |  |  |  |--leaf "22" 
     |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 5.17]
     |  |  |     |--leaf "9" 
     |  |  |     `--leaf "41" 
     |  |  `--[dendrogram w/ 2 branches and 4 members at h = 18.3]
     |  |     |--leaf "36" 
     |  |     `--[dendrogram w/ 2 branches and 3 members at h = 8.91]
     |  |        |--leaf "35" 
     |  |        `--[dendrogram w/ 2 branches and 2 members at h = 4.02]
     |  |           |--leaf "20" 
     |  |           `--leaf "21" 
     |  `--[dendrogram w/ 2 branches and 10 members at h = 47.5]
     |     |--[dendrogram w/ 2 branches and 5 members at h = 18]
     |     |  |--[dendrogram w/ 2 branches and 3 members at h = 7.64]
     |     |  |  |--leaf "39" 
     |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 4.32]
     |     |  |     |--leaf "40" 
     |     |  |     `--leaf "42" 
     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 7.92]
     |     |     |--leaf "37" 
     |     |     `--leaf "38" 
     |     `--[dendrogram w/ 2 branches and 5 members at h = 23]
     |        |--[dendrogram w/ 2 branches and 2 members at h = 3.81]
     |        |  |--leaf "31" 
     |        |  `--leaf "34" 
     |        `--[dendrogram w/ 2 branches and 3 members at h = 10.8]
     |           |--leaf "32" 
     |           `--[dendrogram w/ 2 branches and 2 members at h = 2.68]
     |              |--leaf "8" 
     |              `--leaf "33" 
     `--[dendrogram w/ 2 branches and 25 members at h = 172]
        |--[dendrogram w/ 2 branches and 6 members at h = 19.6]
        |  |--[dendrogram w/ 2 branches and 2 members at h = 7.75]
        |  |  |--leaf "5" 
        |  |  `--leaf "15" 
        |  `--[dendrogram w/ 2 branches and 4 members at h = 10.9]
        |     |--leaf "16" 
        |     `--[dendrogram w/ 2 branches and 3 members at h = 7.54]
        |        |--leaf "18" 
        |        `--[dendrogram w/ 2 branches and 2 members at h = 4.74]
        |           |--leaf "6" 
        |           `--leaf "17" 
        `--[dendrogram w/ 2 branches and 19 members at h = 108]
           |--[dendrogram w/ 2 branches and 11 members at h = 55]
           |  |--[dendrogram w/ 2 branches and 5 members at h = 14.9]
           |  |  |--[dendrogram w/ 2 branches and 2 members at h = 7.15]
           |  |  |  |--leaf "13" 
           |  |  |  `--leaf "27" 
           |  |  `--[dendrogram w/ 2 branches and 3 members at h = 10.8]
           |  |     |--leaf "2" 
           |  |     `--[dendrogram w/ 2 branches and 2 members at h = 3.49]
           |  |        |--leaf "25" 
           |  |        `--leaf "26" 
           |  `--[dendrogram w/ 2 branches and 6 members at h = 28.0]
           |     |--[dendrogram w/ 2 branches and 2 members at h = 3.84]
           |     |  |--leaf "29" 
           |     |  `--leaf "30" 
           |     `--[dendrogram w/ 2 branches and 4 members at h = 20.8]
           |        |--leaf "3" 
           |        `--[dendrogram w/ 2 branches and 3 members at h = 9.2]
           |           |--leaf "14" 
           |           `--[dendrogram w/ 2 branches and 2 members at h = 6.32]
           |              |--leaf "4" 
           |              `--leaf "28" 
           `--[dendrogram w/ 2 branches and 8 members at h = 75.2]
              |--[dendrogram w/ 2 branches and 4 members at h = 24.6]
              |  |--[dendrogram w/ 2 branches and 2 members at h = 7.08]
              |  |  |--leaf "11" 
              |  |  `--leaf "23" 
              |  `--[dendrogram w/ 2 branches and 2 members at h = 11.5]
              |     |--leaf "12" 
              |     `--leaf "24" 
              `--[dendrogram w/ 2 branches and 4 members at h = 27.7]
                 |--leaf "1" 
                 `--[dendrogram w/ 2 branches and 3 members at h = 9.03]
                    |--leaf "10" 
                    `--[dendrogram w/ 2 branches and 2 members at h = 5.85]
                       |--leaf "7" 
                       `--leaf "19" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/freestat/rcomp/tmp/1jr4p1226338588.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/freestat/rcomp/tmp/2ber81226338588.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> 
> #Note: the /var/www/html/freestat/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/freestat/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/freestat/rcomp/tmp/309b11226338588.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/freestat/rcomp/tmp/49nk41226338588.tab") 
+ }
> 
> system("convert tmp/1jr4p1226338588.ps tmp/1jr4p1226338588.png")
> system("convert tmp/2ber81226338588.ps tmp/2ber81226338588.png")
convert: unable to open image `tmp/2ber81226338588.ps': No such file or directory.
convert: missing an image filename `tmp/2ber81226338588.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.825   0.262   0.996