R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.

> x <- array(list(10030
+ ,17471
+ ,46737
+ ,9536
+ ,14968
+ ,44737
+ ,9953
+ ,15449
+ ,47557
+ ,9775
+ ,17582
+ ,51261
+ ,9843
+ ,18501
+ ,55457
+ ,9461
+ ,17291
+ ,56659
+ ,9230
+ ,16465
+ ,58609
+ ,8956
+ ,17109
+ ,59382
+ ,9608
+ ,18438
+ ,61773
+ ,9482
+ ,16944
+ ,63957
+ ,9962
+ ,16362
+ ,68596
+ ,9766
+ ,16965
+ ,72177
+ ,10312
+ ,18937
+ ,75406
+ ,10032
+ ,17842
+ ,76166
+ ,10411
+ ,16187
+ ,79315
+ ,10438
+ ,17655
+ ,81498
+ ,10803
+ ,19194
+ ,83580
+ ,10365
+ ,18400
+ ,84371
+ ,10488
+ ,17436
+ ,87196
+ ,9698
+ ,19526
+ ,88097
+ ,10087
+ ,21304
+ ,89233
+ ,9769
+ ,18947
+ ,89191
+ ,10381
+ ,18786
+ ,91690
+ ,10117
+ ,24304
+ ,91379
+ ,10775
+ ,23724
+ ,93150
+ ,10735
+ ,23823
+ ,93809
+ ,11601
+ ,21433
+ ,95112
+ ,10749
+ ,23900
+ ,92812
+ ,11227
+ ,25432
+ ,91524
+ ,10904
+ ,23619
+ ,89082
+ ,11418
+ ,23761
+ ,89984
+ ,10429
+ ,23844
+ ,87307
+ ,10755
+ ,26374
+ ,87683
+ ,9566
+ ,24406
+ ,87339
+ ,6849
+ ,24752
+ ,94868
+ ,7210
+ ,26005
+ ,97006
+ ,8472
+ ,27758
+ ,97832
+ ,9334
+ ,25534
+ ,97888
+ ,9523
+ ,26415
+ ,107411
+ ,9622
+ ,28217
+ ,115751
+ ,10215
+ ,29101
+ ,118399
+ ,10752
+ ,27715
+ ,119545
+ ,11766
+ ,27622
+ ,125345
+ ,11816
+ ,29065
+ ,129831
+ ,12730
+ ,31450
+ ,132645
+ ,13481
+ ,29571
+ ,132924
+ ,14905
+ ,30996
+ ,140225
+ ,14571
+ ,30937
+ ,143589
+ ,15308
+ ,34106
+ ,146909
+ ,15870
+ ,32851
+ ,145038
+ ,15950
+ ,36114
+ ,148559
+ ,16350
+ ,34383
+ ,152418
+ ,17086
+ ,38077
+ ,153209
+ ,17668
+ ,35638
+ ,149805
+ ,17947
+ ,35254
+ ,150299
+ ,18322
+ ,36683
+ ,144756
+ ,18696
+ ,38977
+ ,144677
+ ,18772
+ ,34951
+ ,140757
+ ,18947
+ ,34177
+ ,141650
+ ,19142
+ ,35299
+ ,142721
+ ,19724
+ ,36419
+ ,140737)
+ ,dim=c(3
+ ,61)
+ ,dimnames=list(c('X'
+ ,'Y'
+ ,'Z')
+ ,1:61))
>  y <- array(NA,dim=c(3,61),dimnames=list(c('X','Y','Z'),1:61))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 61 members at h = 1247153]
  |--[dendrogram w/ 2 branches and 23 members at h = 175571]
  |  |--[dendrogram w/ 2 branches and 15 members at h = 32975]
  |  |  |--[dendrogram w/ 2 branches and 5 members at h = 5694]
  |  |  |  |--[dendrogram w/ 2 branches and 3 members at h = 3078]
  |  |  |  |  |--leaf "51" 
  |  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 685]
  |  |  |  |     |--leaf "54" 
  |  |  |  |     `--leaf "55" 
  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 3849]
  |  |  |     |--leaf "52" 
  |  |  |     `--leaf "53" 
  |  |  `--[dendrogram w/ 2 branches and 10 members at h = 17029]
  |  |     |--[dendrogram w/ 2 branches and 4 members at h = 7153]
  |  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 2322]
  |  |     |  |  |--leaf "49" 
  |  |     |  |  `--leaf "50" 
  |  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 3381]
  |  |     |     |--leaf "47" 
  |  |     |     `--leaf "48" 
  |  |     `--[dendrogram w/ 2 branches and 6 members at h = 8404]
  |  |        |--[dendrogram w/ 2 branches and 2 members at h = 2326]
  |  |        |  |--leaf "56" 
  |  |        |  `--leaf "57" 
  |  |        `--[dendrogram w/ 2 branches and 4 members at h = 2524]
  |  |           |--leaf "61" 
  |  |           `--[dendrogram w/ 2 branches and 3 members at h = 1996]
  |  |              |--leaf "60" 
  |  |              `--[dendrogram w/ 2 branches and 2 members at h = 1195]
  |  |                 |--leaf "58" 
  |  |                 `--leaf "59" 
  |  `--[dendrogram w/ 2 branches and 8 members at h = 43241]
  |     |--[dendrogram w/ 2 branches and 4 members at h = 8946]
  |     |  |--leaf "43" 
  |     |  `--[dendrogram w/ 2 branches and 3 members at h = 4219]
  |     |     |--leaf "44" 
  |     |     `--[dendrogram w/ 2 branches and 2 members at h = 2043]
  |     |        |--leaf "45" 
  |     |        `--leaf "46" 
  |     `--[dendrogram w/ 2 branches and 4 members at h = 14612]
  |        |--leaf "39" 
  |        `--[dendrogram w/ 2 branches and 3 members at h = 3937]
  |           |--leaf "40" 
  |           `--[dendrogram w/ 2 branches and 2 members at h = 1877]
  |              |--leaf "41" 
  |              `--leaf "42" 
  `--[dendrogram w/ 2 branches and 38 members at h = 367277]
     |--[dendrogram w/ 2 branches and 10 members at h = 41436]
     |  |--[dendrogram w/ 2 branches and 4 members at h = 6535]
     |  |  |--leaf "4" 
     |  |  `--[dendrogram w/ 2 branches and 3 members at h = 3361]
     |  |     |--leaf "2" 
     |  |     `--[dendrogram w/ 2 branches and 2 members at h = 2183]
     |  |        |--leaf "1" 
     |  |        `--leaf "3" 
     |  `--[dendrogram w/ 2 branches and 6 members at h = 10295]
     |     |--[dendrogram w/ 2 branches and 2 members at h = 2649]
     |     |  |--leaf "9" 
     |     |  `--leaf "10" 
     |     `--[dendrogram w/ 2 branches and 4 members at h = 5088]
     |        |--[dendrogram w/ 2 branches and 2 members at h = 1043]
     |        |  |--leaf "7" 
     |        |  `--leaf "8" 
     |        `--[dendrogram w/ 2 branches and 2 members at h = 1748]
     |           |--leaf "5" 
     |           `--leaf "6" 
     `--[dendrogram w/ 2 branches and 28 members at h = 108358]
        |--[dendrogram w/ 2 branches and 8 members at h = 25064]
        |  |--[dendrogram w/ 2 branches and 4 members at h = 6251]
        |  |  |--[dendrogram w/ 2 branches and 2 members at h = 1203]
        |  |  |  |--leaf "17" 
        |  |  |  `--leaf "18" 
        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 2631]
        |  |     |--leaf "15" 
        |  |     `--leaf "16" 
        |  `--[dendrogram w/ 2 branches and 4 members at h = 8960]
        |     |--[dendrogram w/ 2 branches and 2 members at h = 1362]
        |     |  |--leaf "13" 
        |     |  `--leaf "14" 
        |     `--[dendrogram w/ 2 branches and 2 members at h = 3637]
        |        |--leaf "11" 
        |        `--leaf "12" 
        `--[dendrogram w/ 2 branches and 20 members at h = 34760]
           |--[dendrogram w/ 2 branches and 8 members at h = 15135]
           |  |--[dendrogram w/ 2 branches and 4 members at h = 4333]
           |  |  |--leaf "35" 
           |  |  `--[dendrogram w/ 2 branches and 3 members at h = 2385]
           |  |     |--leaf "38" 
           |  |     `--[dendrogram w/ 2 branches and 2 members at h = 2313]
           |  |        |--leaf "36" 
           |  |        `--leaf "37" 
           |  `--[dendrogram w/ 2 branches and 4 members at h = 4390]
           |     |--leaf "27" 
           |     `--[dendrogram w/ 2 branches and 3 members at h = 984]
           |        |--leaf "26" 
           |        `--[dendrogram w/ 2 branches and 2 members at h = 382]
           |           |--leaf "25" 
           |           `--leaf "28" 
           `--[dendrogram w/ 2 branches and 12 members at h = 19913]
              |--[dendrogram w/ 2 branches and 5 members at h = 4297]
              |  |--leaf "23" 
              |  `--[dendrogram w/ 2 branches and 4 members at h = 3741]
              |     |--leaf "19" 
              |     `--[dendrogram w/ 2 branches and 3 members at h = 2603]
              |        |--leaf "21" 
              |        `--[dendrogram w/ 2 branches and 2 members at h = 1240]
              |           |--leaf "20" 
              |           `--leaf "22" 
              `--[dendrogram w/ 2 branches and 7 members at h = 7242]
                 |--[dendrogram w/ 2 branches and 3 members at h = 2925]
                 |  |--leaf "33" 
                 |  `--[dendrogram w/ 2 branches and 2 members at h = 1030]
                 |     |--leaf "32" 
                 |     `--leaf "34" 
                 `--[dendrogram w/ 2 branches and 4 members at h = 3604]
                    |--[dendrogram w/ 2 branches and 2 members at h = 1048]
                    |  |--leaf "30" 
                    |  `--leaf "31" 
                    `--[dendrogram w/ 2 branches and 2 members at h = 1589]
                       |--leaf "24" 
                       `--leaf "29" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1ikby1226419703.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2825d1226419703.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/39d141226419703.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4kf481226419703.tab") 
+ }
> 
> system("convert tmp/1ikby1226419703.ps tmp/1ikby1226419703.png")
> system("convert tmp/2825d1226419703.ps tmp/2825d1226419703.png")
convert: unable to open image `tmp/2825d1226419703.ps': No such file or directory.
convert: missing an image filename `tmp/2825d1226419703.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.803   0.217   1.119