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Type 'q()' to quit R. > x <- array(list(17,15,14,1,1,-5,-9,6,-14,-16,-21,-42,-21,-23,-24,-14,-15,-11,31,24,20,27,15,7,10,15,12,12,14,4,-23,-25,-37,13,14,19,26,21,16,-1,13,2,4,4,-9,-16,-16,-36,-5,13,-29,9,20,3,23,27,33,9,-8,9,2,13,13,10,12,3,-29,-25,-47,17,20,18,9,22,7,9,16,16,-10,-12,-12,-23,-13,-23,13,7,-18,13,12,11,-9,-8,-4,9,12,17,5,-13,-4,8,12,-1,-18,-25,-41,7,0,26,4,18,3),dim=c(3,37),dimnames=list(c('Woongeb','Niet-Woongeb','Openbare'),1:37)) > y <- array(NA,dim=c(3,37),dimnames=list(c('Woongeb','Niet-Woongeb','Openbare'),1:37)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'FALSE' > par3 = 'FALSE' > par2 = 'ALL' > par1 = 'ward' > ylab = 'height' > xlab = 'cases' > main = 'Dendrogram' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > par3 <- as.logical(par3) > par4 <- as.logical(par4) > if (par3 == 'TRUE'){ + dum = xlab + xlab = ylab + ylab = dum + } > x <- t(y) > hc <- hclust(dist(x),method=par1) > d <- as.dendrogram(hc) > str(d) --[dendrogram w/ 2 branches and 37 members at h = 507] |--[dendrogram w/ 2 branches and 20 members at h = 81.1] | |--[dendrogram w/ 2 branches and 8 members at h = 18.8] | | |--[dendrogram w/ 2 branches and 2 members at h = 11.4] | | | |--leaf "14" | | | `--leaf "21" | | `--[dendrogram w/ 2 branches and 6 members at h = 16.9] | | |--[dendrogram w/ 2 branches and 3 members at h = 6.45] | | | |--leaf "34" | | | `--[dendrogram w/ 2 branches and 2 members at h = 3] | | | |--leaf "10" | | | `--leaf "22" | | `--[dendrogram w/ 2 branches and 3 members at h = 7.13] | | |--leaf "37" | | `--[dendrogram w/ 2 branches and 2 members at h = 4.47] | | |--leaf "18" | | `--leaf "25" | `--[dendrogram w/ 2 branches and 12 members at h = 55.7] | |--[dendrogram w/ 2 branches and 4 members at h = 25.7] | | |--leaf "19" | | `--[dendrogram w/ 2 branches and 3 members at h = 15.8] | | |--leaf "8" | | `--[dendrogram w/ 2 branches and 2 members at h = 7.07] | | |--leaf "7" | | `--leaf "13" | `--[dendrogram w/ 2 branches and 8 members at h = 28.8] | |--leaf "36" | `--[dendrogram w/ 2 branches and 7 members at h = 13.4] | |--[dendrogram w/ 2 branches and 2 members at h = 6.4] | | |--leaf "1" | | `--leaf "24" | `--[dendrogram w/ 2 branches and 5 members at h = 9.88] | |--[dendrogram w/ 2 branches and 2 members at h = 4.36] | | |--leaf "9" | | `--leaf "30" | `--[dendrogram w/ 2 branches and 3 members at h = 5.48] | |--leaf "12" | `--[dendrogram w/ 2 branches and 2 members at h = 4.12] | |--leaf "26" | `--leaf "32" `--[dendrogram w/ 2 branches and 17 members at h = 169] |--[dendrogram w/ 2 branches and 5 members at h = 18.2] | |--leaf "23" | `--[dendrogram w/ 2 branches and 4 members at h = 11.5] | |--leaf "16" | `--[dendrogram w/ 2 branches and 3 members at h = 9.07] | |--leaf "11" | `--[dendrogram w/ 2 branches and 2 members at h = 4.58] | |--leaf "4" | `--leaf "35" `--[dendrogram w/ 2 branches and 12 members at h = 80] |--[dendrogram w/ 2 branches and 5 members at h = 35.3] | |--[dendrogram w/ 2 branches and 2 members at h = 10.2] | | |--leaf "5" | | `--leaf "28" | `--[dendrogram w/ 2 branches and 3 members at h = 11.7] | |--leaf "31" | `--[dendrogram w/ 2 branches and 2 members at h = 5.1] | |--leaf "6" | `--leaf "27" `--[dendrogram w/ 2 branches and 7 members at h = 46.6] |--[dendrogram w/ 2 branches and 2 members at h = 14.5] | |--leaf "20" | `--leaf "33" `--[dendrogram w/ 2 branches and 5 members at h = 27.2] |--leaf "17" `--[dendrogram w/ 2 branches and 4 members at h = 21.4] |--leaf "29" `--[dendrogram w/ 2 branches and 3 members at h = 17] |--leaf "3" `--[dendrogram w/ 2 branches and 2 members at h = 5.83] |--leaf "2" `--leaf "15" > mysub <- paste('Method: ',par1) > postscript(file="/var/www/html/rcomp/tmp/1trt41226498751.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if (par4 == 'TRUE'){ + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } > dev.off() null device 1 > if (par2 != 'ALL'){ + if (par3 == 'TRUE'){ + ylab = 'cluster' + } else { + xlab = 'cluster' + } + par2 <- as.numeric(par2) + memb <- cutree(hc, k = par2) + cent <- NULL + for(k in 1:par2){ + cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) + } + hc1 <- hclust(dist(cent),method=par1, members = table(memb)) + de <- as.dendrogram(hc1) + postscript(file="/var/www/html/rcomp/tmp/2zg591226498751.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + if (par4 == 'TRUE'){ + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } + dev.off() + str(de) + } > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Summary of Dendrogram',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Label',header=TRUE) > a<-table.element(a,'Height',header=TRUE) > a<-table.row.end(a) > num <- length(x[,1])-1 > for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,hc$labels[i]) + a<-table.element(a,hc$height[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/31xy11226498751.tab") > if (par2 != 'ALL'){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Label',header=TRUE) + a<-table.element(a,'Height',header=TRUE) + a<-table.row.end(a) + num <- par2-1 + for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,i) + a<-table.element(a,hc1$height[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/4s3me1226498751.tab") + } > > system("convert tmp/1trt41226498751.ps tmp/1trt41226498751.png") > system("convert tmp/2zg591226498751.ps tmp/2zg591226498751.png") convert: unable to open image `tmp/2zg591226498751.ps': No such file or directory. convert: missing an image filename `tmp/2zg591226498751.png'. > > > proc.time() user system elapsed 0.713 0.206 1.034