R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(62.2
+ ,43.5
+ ,200.7
+ ,88.5
+ ,37.7
+ ,146.5
+ ,93.3
+ ,36.8
+ ,143.6
+ ,89.2
+ ,24.4
+ ,141.5
+ ,101.3
+ ,31.3
+ ,137.5
+ ,97
+ ,43.9
+ ,138.7
+ ,102.2
+ ,53.6
+ ,135.5
+ ,100.3
+ ,48.9
+ ,136.4
+ ,78.2
+ ,30.9
+ ,112.1
+ ,105.9
+ ,31.8
+ ,109
+ ,119.9
+ ,41.3
+ ,123.8
+ ,108
+ ,43.7
+ ,151.2
+ ,77
+ ,54.1
+ ,139.2
+ ,93.1
+ ,47.8
+ ,115.7
+ ,109.5
+ ,36.7
+ ,147.6
+ ,100.4
+ ,30.8
+ ,126.1
+ ,99
+ ,31.9
+ ,122.8
+ ,113.9
+ ,61.7
+ ,137.3
+ ,102.1
+ ,73
+ ,142
+ ,101.6
+ ,64.7
+ ,137.4
+ ,84
+ ,24.2
+ ,89.4
+ ,110.7
+ ,33.9
+ ,108
+ ,111.6
+ ,32.4
+ ,117.7
+ ,110.7
+ ,63.2
+ ,127.3
+ ,73.1
+ ,71.8
+ ,121
+ ,87.5
+ ,60.4
+ ,104.1
+ ,109.6
+ ,48
+ ,119.5
+ ,99.3
+ ,44.5
+ ,116.7
+ ,92.1
+ ,44.9
+ ,96.1
+ ,109.3
+ ,70.9
+ ,125
+ ,94.5
+ ,72.7
+ ,118.8
+ ,91.4
+ ,59.5
+ ,114.9
+ ,82.9
+ ,35.9
+ ,79.3
+ ,103.3
+ ,40
+ ,90.5
+ ,96
+ ,43.6
+ ,87.8
+ ,104.8
+ ,57.2
+ ,109.4
+ ,65.8
+ ,75.8
+ ,88.9
+ ,78.7
+ ,57.7
+ ,97.4
+ ,100.3
+ ,47.7
+ ,112
+ ,85
+ ,42.3
+ ,86.8
+ ,94.5
+ ,43
+ ,82.9
+ ,97.9
+ ,68
+ ,105.2
+ ,91.9
+ ,70.6
+ ,89.1
+ ,87.2
+ ,54.2
+ ,85.5
+ ,84.4
+ ,38.6
+ ,87.1
+ ,99.2
+ ,40.3
+ ,85.2
+ ,105.4
+ ,49.2
+ ,88.2
+ ,110.9
+ ,68.5
+ ,104
+ ,69.8
+ ,75.9
+ ,96.4
+ ,86.8
+ ,63.2
+ ,82.3
+ ,106.7
+ ,49.8
+ ,114.1
+ ,88.8
+ ,37
+ ,88.9
+ ,96.9
+ ,48.8
+ ,93.6
+ ,108.1
+ ,74.9
+ ,101.8
+ ,93.7
+ ,75.3
+ ,96.6
+ ,94.8
+ ,66.9
+ ,93.7
+ ,79.8
+ ,44.1
+ ,68.4
+ ,95.6
+ ,39.8
+ ,68.7
+ ,107.9
+ ,56.6
+ ,81.2
+ ,104.9
+ ,77.1
+ ,85.1
+ ,61.9
+ ,78.5
+ ,75.4
+ ,85.7
+ ,70.6
+ ,71.6
+ ,92.4
+ ,54.2
+ ,83
+ ,86.4
+ ,47.2
+ ,72.3
+ ,99.3
+ ,55.1
+ ,90.2
+ ,95.5
+ ,74.5
+ ,89
+ ,97
+ ,88
+ ,84.9
+ ,102.1
+ ,80.8
+ ,90.9
+ ,77.8
+ ,54.4
+ ,46.6
+ ,105.5
+ ,55.2
+ ,55.4
+ ,113.2
+ ,73.8
+ ,88.7
+ ,108.8
+ ,85.3
+ ,76
+ ,66.9
+ ,98.7
+ ,76.9
+ ,89.3
+ ,86.1
+ ,72.1
+ ,93.6
+ ,62.5
+ ,90
+ ,92
+ ,58.6
+ ,92.3
+ ,99.5
+ ,67
+ ,78
+ ,98.6
+ ,88.4
+ ,93.9
+ ,94.6
+ ,96.5
+ ,84.5
+ ,96.7
+ ,87.1
+ ,80.4
+ ,75.3
+ ,61.2
+ ,60.5
+ ,102.5
+ ,62.5
+ ,75.3
+ ,115.1
+ ,85.2
+ ,91.5
+ ,104.7
+ ,101.7
+ ,105.2
+ ,71.4
+ ,113.7
+ ,92.7)
+ ,dim=c(3
+ ,85)
+ ,dimnames=list(c('X1'
+ ,'X2'
+ ,'X3')
+ ,1:85))
>  y <- array(NA,dim=c(3,85),dimnames=list(c('X1','X2','X3'),1:85))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 85 members at h = 923]
  |--[dendrogram w/ 2 branches and 35 members at h = 203]
  |  |--[dendrogram w/ 2 branches and 13 members at h = 84.9]
  |  |  |--[dendrogram w/ 2 branches and 6 members at h = 31.1]
  |  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 7.32]
  |  |  |  |  |--leaf "48" 
  |  |  |  |  `--leaf "54" 
  |  |  |  `--[dendrogram w/ 2 branches and 4 members at h = 18.6]
  |  |  |     |--[dendrogram w/ 2 branches and 2 members at h = 13.5]
  |  |  |     |  |--leaf "36" 
  |  |  |     |  `--leaf "42" 
  |  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 14.1]
  |  |  |        |--leaf "31" 
  |  |  |        `--leaf "32" 
  |  |  `--[dendrogram w/ 2 branches and 7 members at h = 68.9]
  |  |     |--[dendrogram w/ 2 branches and 5 members at h = 24]
  |  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 9.5]
  |  |     |  |  |--leaf "19" 
  |  |     |  |  `--leaf "20" 
  |  |     |  `--[dendrogram w/ 2 branches and 3 members at h = 15.0]
  |  |     |     |--leaf "18" 
  |  |     |     `--[dendrogram w/ 2 branches and 2 members at h = 8.16]
  |  |     |        |--leaf "24" 
  |  |     |        `--leaf "30" 
  |  |     `--[dendrogram w/ 2 branches and 2 members at h = 25.7]
  |  |        |--leaf "13" 
  |  |        `--leaf "25" 
  |  `--[dendrogram w/ 2 branches and 22 members at h = 176]
  |     |--[dendrogram w/ 2 branches and 12 members at h = 49.3]
  |     |  |--[dendrogram w/ 2 branches and 5 members at h = 18.8]
  |     |  |  |--[dendrogram w/ 2 branches and 2 members at h = 6.39]
  |     |  |  |  |--leaf "27" 
  |     |  |  |  `--leaf "51" 
  |     |  |  `--[dendrogram w/ 2 branches and 3 members at h = 8.2]
  |     |  |     |--leaf "14" 
  |     |  |     `--[dendrogram w/ 2 branches and 2 members at h = 5.77]
  |     |  |        |--leaf "28" 
  |     |  |        `--leaf "39" 
  |     |  `--[dendrogram w/ 2 branches and 7 members at h = 43.8]
  |     |     |--[dendrogram w/ 2 branches and 4 members at h = 23.6]
  |     |     |  |--leaf "11" 
  |     |     |  `--[dendrogram w/ 2 branches and 3 members at h = 11.7]
  |     |     |     |--leaf "23" 
  |     |     |     `--[dendrogram w/ 2 branches and 2 members at h = 5.33]
  |     |     |        |--leaf "10" 
  |     |     |        `--leaf "22" 
  |     |     `--[dendrogram w/ 2 branches and 3 members at h = 31.9]
  |     |        |--leaf "9" 
  |     |        `--[dendrogram w/ 2 branches and 2 members at h = 3.75]
  |     |           |--leaf "16" 
  |     |           `--leaf "17" 
  |     `--[dendrogram w/ 2 branches and 10 members at h = 112]
  |        |--leaf "1" 
  |        `--[dendrogram w/ 2 branches and 9 members at h = 42.4]
  |           |--[dendrogram w/ 2 branches and 4 members at h = 17.8]
  |           |  |--[dendrogram w/ 2 branches and 2 members at h = 5.68]
  |           |  |  |--leaf "2" 
  |           |  |  `--leaf "3" 
  |           |  `--[dendrogram w/ 2 branches and 2 members at h = 14.5]
  |           |     |--leaf "4" 
  |           |     `--leaf "5" 
  |           `--[dendrogram w/ 2 branches and 5 members at h = 33.7]
  |              |--[dendrogram w/ 2 branches and 2 members at h = 8.01]
  |              |  |--leaf "12" 
  |              |  `--leaf "15" 
  |              `--[dendrogram w/ 2 branches and 3 members at h = 10.2]
  |                 |--leaf "6" 
  |                 `--[dendrogram w/ 2 branches and 2 members at h = 5.15]
  |                    |--leaf "7" 
  |                    `--leaf "8" 
  `--[dendrogram w/ 2 branches and 50 members at h = 362]
     |--[dendrogram w/ 2 branches and 17 members at h = 144]
     |  |--[dendrogram w/ 2 branches and 5 members at h = 43.4]
     |  |  |--leaf "85" 
     |  |  `--[dendrogram w/ 2 branches and 4 members at h = 31.8]
     |  |     |--[dendrogram w/ 2 branches and 2 members at h = 8.5]
     |  |     |  |--leaf "37" 
     |  |     |  `--leaf "49" 
     |  |     `--[dendrogram w/ 2 branches and 2 members at h = 20.9]
     |  |        |--leaf "61" 
     |  |        `--leaf "73" 
     |  `--[dendrogram w/ 2 branches and 12 members at h = 53.3]
     |     |--[dendrogram w/ 2 branches and 5 members at h = 32]
     |     |  |--[dendrogram w/ 2 branches and 3 members at h = 11.3]
     |     |  |  |--leaf "79" 
     |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 4.6]
     |     |  |     |--leaf "67" 
     |     |  |     `--leaf "80" 
     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 15.9]
     |     |     |--leaf "62" 
     |     |     `--leaf "74" 
     |     `--[dendrogram w/ 2 branches and 7 members at h = 37.3]
     |        |--leaf "84" 
     |        `--[dendrogram w/ 2 branches and 6 members at h = 20.6]
     |           |--[dendrogram w/ 2 branches and 3 members at h = 13.9]
     |           |  |--leaf "78" 
     |           |  `--[dendrogram w/ 2 branches and 2 members at h = 7.43]
     |           |     |--leaf "60" 
     |           |     `--leaf "68" 
     |           `--[dendrogram w/ 2 branches and 3 members at h = 19]
     |              |--leaf "72" 
     |              `--[dendrogram w/ 2 branches and 2 members at h = 11.9]
     |                 |--leaf "71" 
     |                 `--leaf "83" 
     `--[dendrogram w/ 2 branches and 33 members at h = 162]
        |--[dendrogram w/ 2 branches and 16 members at h = 57.3]
        |  |--[dendrogram w/ 2 branches and 5 members at h = 27]
        |  |  |--[dendrogram w/ 2 branches and 2 members at h = 6.04]
        |  |  |  |--leaf "77" 
        |  |  |  `--leaf "82" 
        |  |  `--[dendrogram w/ 2 branches and 3 members at h = 12.4]
        |  |     |--leaf "59" 
        |  |     `--[dendrogram w/ 2 branches and 2 members at h = 8.72]
        |  |        |--leaf "47" 
        |  |        `--leaf "65" 
        |  `--[dendrogram w/ 2 branches and 11 members at h = 36.3]
        |     |--[dendrogram w/ 2 branches and 6 members at h = 21.3]
        |     |  |--[dendrogram w/ 2 branches and 3 members at h = 8.23]
        |     |  |  |--leaf "56" 
        |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 4.8]
        |     |  |     |--leaf "75" 
        |     |  |     `--leaf "76" 
        |     |  `--[dendrogram w/ 2 branches and 3 members at h = 9.49]
        |     |     |--leaf "55" 
        |     |     `--[dendrogram w/ 2 branches and 2 members at h = 5.31]
        |     |        |--leaf "43" 
        |     |        `--leaf "66" 
        |     `--[dendrogram w/ 2 branches and 5 members at h = 33.2]
        |        |--[dendrogram w/ 2 branches and 2 members at h = 11.4]
        |        |  |--leaf "26" 
        |        |  `--leaf "38" 
        |        `--[dendrogram w/ 2 branches and 3 members at h = 11.5]
        |           |--leaf "50" 
        |           `--[dendrogram w/ 2 branches and 2 members at h = 5.77]
        |              |--leaf "44" 
        |              `--leaf "63" 
        `--[dendrogram w/ 2 branches and 17 members at h = 125]
           |--[dendrogram w/ 2 branches and 6 members at h = 42.0]
           |  |--[dendrogram w/ 2 branches and 2 members at h = 15.7]
           |  |  |--leaf "69" 
           |  |  `--leaf "81" 
           |  `--[dendrogram w/ 2 branches and 4 members at h = 33.9]
           |     |--leaf "70" 
           |     `--[dendrogram w/ 2 branches and 3 members at h = 16.4]
           |        |--leaf "58" 
           |        `--[dendrogram w/ 2 branches and 2 members at h = 8.27]
           |           |--leaf "57" 
           |           `--leaf "64" 
           `--[dendrogram w/ 2 branches and 11 members at h = 46.8]
              |--[dendrogram w/ 2 branches and 6 members at h = 19.5]
              |  |--[dendrogram w/ 2 branches and 2 members at h = 6.67]
              |  |  |--leaf "29" 
              |  |  `--leaf "53" 
              |  `--[dendrogram w/ 2 branches and 4 members at h = 10.9]
              |     |--leaf "34" 
              |     `--[dendrogram w/ 2 branches and 3 members at h = 5.73]
              |        |--leaf "46" 
              |        `--[dendrogram w/ 2 branches and 2 members at h = 5.16]
              |           |--leaf "35" 
              |           `--leaf "41" 
              `--[dendrogram w/ 2 branches and 5 members at h = 20.3]
                 |--leaf "21" 
                 `--[dendrogram w/ 2 branches and 4 members at h = 12.3]
                    |--leaf "33" 
                    `--[dendrogram w/ 2 branches and 3 members at h = 6.66]
                       |--leaf "52" 
                       `--[dendrogram w/ 2 branches and 2 members at h = 3.76]
                          |--leaf "40" 
                          `--leaf "45" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1pd8g1226516288.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/282fr1226516288.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3eeqf1226516288.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/483tc1226516288.tab") 
+ }
> 
> system("convert tmp/1pd8g1226516288.ps tmp/1pd8g1226516288.png")
> system("convert tmp/282fr1226516288.ps tmp/282fr1226516288.png")
convert: unable to open image `tmp/282fr1226516288.ps': No such file or directory.
convert: missing an image filename `tmp/282fr1226516288.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.895   0.213   1.063