Q2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| *The author of this computation has been verified* | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| R Software Module: rwasp_hierarchicalclustering.wasp (opens new window with default values) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Title produced by software: Hierarchical Clustering | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Date of computation: Thu, 13 Nov 2008 04:42:26 -0700 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Cite this page as follows: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL http://www.freestatistics.org/blog/date/2008/Nov/13/t1226576625t9v9x82o1cev6pm.htm/, Retrieved Thu, 13 Nov 2008 11:43:47 +0000 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BibTeX entries for LaTeX users: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
@Manual{KEY,
author = {{YOUR NAME}},
publisher = {Office for Research Development and Education},
title = {Statistical Computations at FreeStatistics.org, URL http://www.freestatistics.org/blog/date/2008/Nov/13/t1226576625t9v9x82o1cev6pm.htm/},
year = {2008},
}
@Manual{R,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Development Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2008},
note = {{ISBN} 3-900051-07-0},
url = {http://www.R-project.org},
}
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Feedback Forum: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Post a new message | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Original text written by user: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IsPrivate? | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| No (this computation is public) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| User-defined keywords: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Dataseries X: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| » Textbox « » Textfile « » CSV « | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 0,9059 109,86 7,4367 0,8883 108,68 7,4452 0,8924 113,38 7,4431 0,8833 117,12 7,4329 0,8700 116,23 7,4299 0,8758 114,75 7,4324 0,8858 115,81 7,4341 0,9170 115,86 7,4356 0,9554 117,80 7,4330 0,9922 117,11 7,4301 0,9778 116,31 7,4270 0,9808 118,38 7,4271 0,9811 121,57 7,4297 1,0014 121,65 7,4280 1,0183 124,20 7,4264 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Output produced by software: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Charts produced by software: |
| Parameters (Session): | par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ; | | Parameters (R input): | par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ; | | R code (references can be found in the software module): | par3 <- as.logical(par3)
| par4 <- as.logical(par4) if (par3 == 'TRUE'){ dum = xlab xlab = ylab ylab = dum } x <- t(y) hc <- hclust(dist(x),method=par1) d <- as.dendrogram(hc) str(d) mysub <- paste('Method: ',par1) bitmap(file='test1.png') if (par4 == 'TRUE'){ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) } else { plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) } dev.off() if (par2 != 'ALL'){ if (par3 == 'TRUE'){ ylab = 'cluster' } else { xlab = 'cluster' } par2 <- as.numeric(par2) memb <- cutree(hc, k = par2) cent <- NULL for(k in 1:par2){ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) } hc1 <- hclust(dist(cent),method=par1, members = table(memb)) de <- as.dendrogram(hc1) bitmap(file='test2.png') if (par4 == 'TRUE'){ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) } else { plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) } dev.off() str(de) } load(file='createtable') a<-table.start() a<-table.row.start(a) a<-table.element(a,'Summary of Dendrogram',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Label',header=TRUE) a<-table.element(a,'Height',header=TRUE) a<-table.row.end(a) num <- length(x[,1])-1 for (i in 1:num) { a<-table.row.start(a) a<-table.element(a,hc$labels[i]) a<-table.element(a,hc$height[i]) a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable1.tab') if (par2 != 'ALL'){ a<-table.start() a<-table.row.start(a) a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Label',header=TRUE) a<-table.element(a,'Height',header=TRUE) a<-table.row.end(a) num <- par2-1 for (i in 1:num) { a<-table.row.start(a) a<-table.element(a,i) a<-table.element(a,hc1$height[i]) a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable2.tab') } | Copyright
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