R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- array(list(3.3
+ ,2.36
+ ,5.41
+ ,2.86
+ ,1.95
+ ,5.46
+ ,2.27
+ ,2.16
+ ,5.64
+ ,1.95
+ ,2.76
+ ,5.76
+ ,2.98
+ ,2.09
+ ,5.82
+ ,1.71
+ ,1.49
+ ,5.84
+ ,1.31
+ ,1.17
+ ,5.83
+ ,1.37
+ ,1.3
+ ,5.85
+ ,1.8
+ ,1.26
+ ,5.85
+ ,2.14
+ ,2.17
+ ,5.88
+ ,2.05
+ ,2.03
+ ,5.87
+ ,2.43
+ ,2.18
+ ,5.87
+ ,5.28
+ ,2.61
+ ,5.85
+ ,4.07
+ ,2.58
+ ,5.89
+ ,3.24
+ ,3.86
+ ,5.88
+ ,1.22
+ ,3.81
+ ,5.89
+ ,1.18
+ ,2.41
+ ,5.9
+ ,1
+ ,1.47
+ ,5.91
+ ,1.18
+ ,1.33
+ ,5.89
+ ,1.86
+ ,1.38
+ ,5.92
+ ,2.38
+ ,1.57
+ ,5.91
+ ,1.48
+ ,2.6
+ ,5.96
+ ,1.62
+ ,2.18
+ ,5.96
+ ,2.44
+ ,2.36
+ ,5.99
+ ,3.91
+ ,2.24
+ ,5.92
+ ,3.83
+ ,2.41
+ ,5.96
+ ,2.9
+ ,2.51
+ ,5.96
+ ,1.67
+ ,2.98
+ ,5.97
+ ,1.19
+ ,1.87
+ ,5.96
+ ,1.26
+ ,1.9
+ ,5.95
+ ,1.6
+ ,1.47
+ ,5.97
+ ,2.61
+ ,1.45
+ ,5.98
+ ,2.19
+ ,2.71
+ ,5.99
+ ,1.46
+ ,2.9
+ ,6.03
+ ,2.17
+ ,2.11
+ ,6.05
+ ,2.6
+ ,2.18
+ ,6.08
+ ,4.33
+ ,2.24
+ ,6.1
+ ,2.9
+ ,2.05
+ ,6.11
+ ,2.05
+ ,2.42
+ ,6.09
+ ,1.51
+ ,2.77
+ ,6.1
+ ,1.19
+ ,1.99
+ ,6.12
+ ,1.08
+ ,1.47
+ ,6.13
+ ,1.1
+ ,1.09
+ ,6.13
+ ,1.39
+ ,0.93
+ ,6.17
+ ,1.35
+ ,1.32
+ ,6.19
+ ,1.69
+ ,2.03
+ ,6.23
+ ,2.35
+ ,2.04
+ ,6.21
+ ,3.7
+ ,2.78
+ ,6.23
+ ,3.55
+ ,2.8
+ ,6.25
+ ,3.75
+ ,3.03
+ ,6.23
+ ,4.23
+ ,3.11
+ ,6.23
+ ,2.13
+ ,2.75
+ ,6.24
+ ,1.33
+ ,2.78
+ ,6.28
+ ,1.46
+ ,1.76
+ ,6.3
+ ,2.1
+ ,1.29
+ ,6.34
+ ,1.76
+ ,1.28
+ ,6.27
+ ,1.28
+ ,1.43
+ ,6.22
+ ,1.26
+ ,1.71
+ ,6.31
+ ,1.99
+ ,1.89
+ ,6.33
+ ,3.06
+ ,1.84
+ ,6.31
+ ,3.33
+ ,2.08
+ ,6.35
+ ,4.02
+ ,2.09
+ ,6.33
+ ,2.43
+ ,2.36
+ ,6.36
+ ,1.39
+ ,2.99
+ ,6.37
+ ,1.52
+ ,2.75
+ ,6.33
+ ,1.75
+ ,1.58
+ ,6.34
+ ,2.22
+ ,1.69
+ ,6.42
+ ,2.57
+ ,1.3
+ ,6.42
+ ,2.37
+ ,1.97
+ ,6.48
+ ,1.69
+ ,1.84
+ ,6.47
+ ,2.71
+ ,1.96
+ ,6.5
+ ,3.06
+ ,1.86
+ ,6.52
+ ,4.64
+ ,2.75
+ ,6.49
+ ,3.22
+ ,2.62
+ ,6.51
+ ,2.35
+ ,2.41
+ ,6.52
+ ,2.01
+ ,3.61
+ ,6.54
+ ,1.49
+ ,2.03
+ ,6.59
+ ,1.31
+ ,1.45
+ ,6.6
+ ,1.29
+ ,1.4
+ ,6.59
+ ,1.33
+ ,1.3
+ ,6.58
+ ,1.33
+ ,1.58
+ ,6.55
+ ,1.39
+ ,2.1
+ ,6.57
+ ,2.39
+ ,2.27
+ ,6.61
+ ,3.04
+ ,2.54
+ ,6.61)
+ ,dim=c(3
+ ,84)
+ ,dimnames=list(c('Kropsla'
+ ,'Tomaten'
+ ,'Gehakt')
+ ,1:84))
>  y <- array(NA,dim=c(3,84),dimnames=list(c('Kropsla','Tomaten','Gehakt'),1:84))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Prof. Dr. P. Wessa
> #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #Technical description: Write here your technical program description (don't use hard returns!)
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 84 members at h = 29.9]
  |--[dendrogram w/ 2 branches and 35 members at h = 4.92]
  |  |--[dendrogram w/ 2 branches and 9 members at h = 1.96]
  |  |  |--[dendrogram w/ 2 branches and 3 members at h = 0.627]
  |  |  |  |--leaf "68" 
  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.269]
  |  |  |     |--leaf "21" 
  |  |  |     `--leaf "32" 
  |  |  `--[dendrogram w/ 2 branches and 6 members at h = 0.891]
  |  |     |--[dendrogram w/ 2 branches and 2 members at h = 0.347]
  |  |     |  |--leaf "55" 
  |  |     |  `--leaf "56" 
  |  |     `--[dendrogram w/ 2 branches and 4 members at h = 0.36]
  |  |        |--[dendrogram w/ 2 branches and 2 members at h = 0.151]
  |  |        |  |--leaf "9" 
  |  |        |  `--leaf "20" 
  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 0.171]
  |  |           |--leaf "6" 
  |  |           `--leaf "31" 
  |  `--[dendrogram w/ 2 branches and 26 members at h = 4.11]
  |     |--[dendrogram w/ 2 branches and 9 members at h = 0.75]
  |     |  |--[dendrogram w/ 2 branches and 4 members at h = 0.531]
  |     |  |  |--[dendrogram w/ 2 branches and 2 members at h = 0.134]
  |     |  |  |  |--leaf "45" 
  |     |  |  |  `--leaf "57" 
  |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.234]
  |     |  |     |--leaf "18" 
  |     |  |     `--leaf "42" 
  |     |  `--[dendrogram w/ 2 branches and 5 members at h = 0.696]
  |     |     |--[dendrogram w/ 2 branches and 3 members at h = 0.226]
  |     |     |  |--leaf "19" 
  |     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.145]
  |     |     |     |--leaf "7" 
  |     |     |     `--leaf "8" 
  |     |     `--[dendrogram w/ 2 branches and 2 members at h = 0.334]
  |     |        |--leaf "43" 
  |     |        `--leaf "44" 
  |     `--[dendrogram w/ 2 branches and 17 members at h = 3.01]
  |        |--[dendrogram w/ 2 branches and 7 members at h = 1.14]
  |        |  |--[dendrogram w/ 2 branches and 3 members at h = 0.244]
  |        |  |  |--leaf "41" 
  |        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.0768]
  |        |  |     |--leaf "29" 
  |        |  |     `--leaf "30" 
  |        |  `--[dendrogram w/ 2 branches and 4 members at h = 0.824]
  |        |     |--[dendrogram w/ 2 branches and 2 members at h = 0.317]
  |        |     |  |--leaf "23" 
  |        |     |  `--leaf "46" 
  |        |     `--[dendrogram w/ 2 branches and 2 members at h = 0.36]
  |        |        |--leaf "17" 
  |        |        `--leaf "22" 
  |        `--[dendrogram w/ 2 branches and 10 members at h = 1.52]
  |           |--[dendrogram w/ 2 branches and 4 members at h = 0.253]
  |           |  |--leaf "81" 
  |           |  `--[dendrogram w/ 2 branches and 3 members at h = 0.156]
  |           |     |--leaf "80" 
  |           |     `--[dendrogram w/ 2 branches and 2 members at h = 0.0548]
  |           |        |--leaf "78" 
  |           |        `--leaf "79" 
  |           `--[dendrogram w/ 2 branches and 6 members at h = 0.818]
  |              |--[dendrogram w/ 2 branches and 2 members at h = 0.124]
  |              |  |--leaf "77" 
  |              |  `--leaf "82" 
  |              `--[dendrogram w/ 2 branches and 4 members at h = 0.561]
  |                 |--[dendrogram w/ 2 branches and 2 members at h = 0.206]
  |                 |  |--leaf "54" 
  |                 |  `--leaf "58" 
  |                 `--[dendrogram w/ 2 branches and 2 members at h = 0.297]
  |                    |--leaf "66" 
  |                    `--leaf "70" 
  `--[dendrogram w/ 2 branches and 49 members at h = 18.3]
     |--[dendrogram w/ 2 branches and 12 members at h = 2.66]
     |  |--[dendrogram w/ 2 branches and 4 members at h = 1.59]
     |  |  |--leaf "15" 
     |  |  `--[dendrogram w/ 2 branches and 3 members at h = 0.323]
     |  |     |--leaf "50" 
     |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.153]
     |  |        |--leaf "48" 
     |  |        `--leaf "49" 
     |  `--[dendrogram w/ 2 branches and 8 members at h = 2.09]
     |     |--[dendrogram w/ 2 branches and 5 members at h = 0.765]
     |     |  |--[dendrogram w/ 2 branches and 3 members at h = 0.389]
     |     |  |  |--leaf "14" 
     |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.192]
     |     |  |     |--leaf "25" 
     |     |  |     `--leaf "26" 
     |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.414]
     |     |     |--leaf "37" 
     |     |     `--leaf "62" 
     |     `--[dendrogram w/ 2 branches and 3 members at h = 1.22]
     |        |--leaf "13" 
     |        `--[dendrogram w/ 2 branches and 2 members at h = 0.604]
     |           |--leaf "51" 
     |           `--leaf "73" 
     `--[dendrogram w/ 2 branches and 37 members at h = 10.1]
        |--[dendrogram w/ 2 branches and 8 members at h = 1.9]
        |  |--[dendrogram w/ 2 branches and 6 members at h = 0.636]
        |  |  |--[dendrogram w/ 2 branches and 3 members at h = 0.275]
        |  |  |  |--leaf "64" 
        |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.199]
        |  |  |     |--leaf "53" 
        |  |  |     `--leaf "65" 
        |  |  `--[dendrogram w/ 2 branches and 3 members at h = 0.299]
        |  |     |--leaf "28" 
        |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0.156]
        |  |        |--leaf "34" 
        |  |        `--leaf "40" 
        |  `--[dendrogram w/ 2 branches and 2 members at h = 1.04]
        |     |--leaf "16" 
        |     `--leaf "76" 
        `--[dendrogram w/ 2 branches and 29 members at h = 5.21]
           |--[dendrogram w/ 2 branches and 10 members at h = 2.05]
           |  |--[dendrogram w/ 2 branches and 5 members at h = 0.893]
           |  |  |--[dendrogram w/ 2 branches and 3 members at h = 0.521]
           |  |  |  |--leaf "27" 
           |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.303]
           |  |  |     |--leaf "5" 
           |  |  |     `--leaf "38" 
           |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.603]
           |  |     |--leaf "1" 
           |  |     `--leaf "2" 
           |  `--[dendrogram w/ 2 branches and 5 members at h = 1.3]
           |     |--[dendrogram w/ 2 branches and 2 members at h = 0.221]
           |     |  |--leaf "74" 
           |     |  `--leaf "84" 
           |     `--[dendrogram w/ 2 branches and 3 members at h = 0.43]
           |        |--leaf "61" 
           |        `--[dendrogram w/ 2 branches and 2 members at h = 0.211]
           |           |--leaf "60" 
           |           `--leaf "72" 
           `--[dendrogram w/ 2 branches and 19 members at h = 2.62]
              |--[dendrogram w/ 2 branches and 8 members at h = 1.10]
              |  |--[dendrogram w/ 2 branches and 3 members at h = 0.246]
              |  |  |--leaf "63" 
              |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.171]
              |  |     |--leaf "75" 
              |  |     `--leaf "83" 
              |  `--[dendrogram w/ 2 branches and 5 members at h = 0.672]
              |     |--[dendrogram w/ 2 branches and 2 members at h = 0.318]
              |     |  |--leaf "59" 
              |     |  `--leaf "67" 
              |     `--[dendrogram w/ 2 branches and 3 members at h = 0.447]
              |        |--leaf "71" 
              |        `--[dendrogram w/ 2 branches and 2 members at h = 0.280]
              |           |--leaf "47" 
              |           `--leaf "69" 
              `--[dendrogram w/ 2 branches and 11 members at h = 1.70]
                 |--[dendrogram w/ 2 branches and 4 members at h = 0.505]
                 |  |--leaf "4" 
                 |  `--[dendrogram w/ 2 branches and 3 members at h = 0.386]
                 |     |--leaf "39" 
                 |     `--[dendrogram w/ 2 branches and 2 members at h = 0.26]
                 |        |--leaf "33" 
                 |        `--leaf "52" 
                 `--[dendrogram w/ 2 branches and 7 members at h = 0.828]
                    |--[dendrogram w/ 2 branches and 3 members at h = 0.279]
                    |  |--leaf "36" 
                    |  `--[dendrogram w/ 2 branches and 2 members at h = 0.217]
                    |     |--leaf "12" 
                    |     `--leaf "24" 
                    `--[dendrogram w/ 2 branches and 4 members at h = 0.424]
                       |--leaf "3" 
                       `--[dendrogram w/ 2 branches and 3 members at h = 0.22]
                          |--leaf "35" 
                          `--[dendrogram w/ 2 branches and 2 members at h = 0.167]
                             |--leaf "10" 
                             `--leaf "11" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/www/html/rcomp/tmp/1vxcr1226614823.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/www/html/rcomp/tmp/2frez1226614823.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/34v2o1226614823.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/www/html/rcomp/tmp/4jl9a1226614823.tab") 
+ }
> 
> system("convert tmp/1vxcr1226614823.ps tmp/1vxcr1226614823.png")
> system("convert tmp/2frez1226614823.ps tmp/2frez1226614823.png")
convert: unable to open image `tmp/2frez1226614823.ps': No such file or directory.
convert: missing an image filename `tmp/2frez1226614823.png'.
> 
> 
> proc.time()
   user  system elapsed 
  0.889   0.237   0.991