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Type 'q()' to quit R. > x <- c(325412,326011,328282,317480,317539,313737,312276,309391,302950,300316,304035,333476,337698,335932,323931,313927,314485,313218,309664,302963,298989,298423,310631,329765,335083,327616,309119,295916,291413,291542,284678,276475,272566,264981,263290,296806,303598,286994,276427,266424,267153,268381,262522,255542,253158,243803,250741,280445,285257,270976,261076,255603,260376,263903,264291,263276,262572,256167,264221,293860,300713,287224) > par9 = '1' > par8 = '2' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '1' > par3 = '1' > par2 = '1.0' > par1 = 'FALSE' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + qqline(residus) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0.58992432 -0.03417782 0.2557838 -0.5654644 -0.7733060 -0.2802736 [2,] 0.56791376 -0.03477370 0.2552511 -0.5440641 -0.3867040 -0.1427662 [3,] 0.54081425 0.00000000 0.2444128 -0.5294162 -0.3804951 -0.1357754 [4,] 0.50125348 0.00000000 0.2789715 -0.4978715 -0.3315955 0.0000000 [5,] 0.05452122 0.00000000 0.2871842 0.0000000 -0.3182547 0.0000000 [6,] 0.00000000 0.00000000 0.2852852 0.0000000 -0.2998209 0.0000000 [7,] 0.00000000 0.00000000 0.0000000 0.0000000 -0.2678601 0.0000000 [8,] 0.00000000 0.00000000 0.0000000 0.0000000 0.0000000 0.0000000 [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [13,] NA NA NA NA NA NA [14,] NA NA NA NA NA NA [,7] [1,] 0.3924434 [2,] 0.0000000 [3,] 0.0000000 [4,] 0.0000000 [5,] 0.0000000 [6,] 0.0000000 [7,] 0.0000000 [8,] 0.0000000 [9,] NA [10,] NA [11,] NA [12,] NA [13,] NA [14,] NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 0.26587 0.84826 0.15291 0.28550 0.90006 0.89622 0.95059 [2,] 0.16254 0.84370 0.14809 0.17912 0.03403 0.49249 NA [3,] 0.15212 NA 0.15198 0.18698 0.03319 0.50597 NA [4,] 0.12759 NA 0.07635 0.15249 0.03568 NA NA [5,] 0.70502 NA 0.06456 NA 0.04633 NA NA [6,] NA NA 0.06600 NA 0.05095 NA NA [7,] NA NA NA NA 0.07196 NA NA [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.5899 -0.0342 0.2558 -0.5655 -0.7733 -0.2803 0.3924 s.e. 0.5247 0.1778 0.1764 0.5242 6.1286 2.1387 6.3038 sigma^2 estimated as 23358814: log likelihood = -486.41, aic = 988.83 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.5899 -0.0342 0.2558 -0.5655 -0.7733 -0.2803 0.3924 s.e. 0.5247 0.1778 0.1764 0.5242 6.1286 2.1387 6.3038 sigma^2 estimated as 23358814: log likelihood = -486.41, aic = 988.83 [[3]][[3]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.5679 -0.0348 0.2553 -0.5441 -0.3867 -0.1428 0 s.e. 0.4012 0.1755 0.1740 0.3998 0.1779 0.2066 0 sigma^2 estimated as 23479054: log likelihood = -486.42, aic = 986.84 [[3]][[4]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.5408 0 0.2444 -0.5294 -0.3805 -0.1358 0 s.e. 0.3725 0 0.1683 0.3963 0.1742 0.2028 0 sigma^2 estimated as 23532782: log likelihood = -486.44, aic = 984.88 [[3]][[5]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.5013 0 0.2790 -0.4979 -0.3316 0 0 s.e. 0.3242 0 0.1545 0.3433 0.1541 0 0 sigma^2 estimated as 23935913: log likelihood = -486.66, aic = 983.32 [[3]][[6]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.0545 0 0.2872 0 -0.3183 0 0 s.e. 0.1433 0 0.1524 0 0.1563 0 0 sigma^2 estimated as 24665295: log likelihood = -487.31, aic = 982.61 [[3]][[7]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 0.2853 0 -0.2998 0 0 s.e. 0 0 0.1523 0 0.1505 0 0 sigma^2 estimated as 24817777: log likelihood = -487.38, aic = 980.76 [[3]][[8]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 0 0 -0.2679 0 0 s.e. 0 0 0 0 0.1462 0 0 sigma^2 estimated as 26870277: log likelihood = -489.08, aic = 982.17 $aic [1] 988.8263 986.8424 984.8822 983.3225 982.6113 980.7555 982.1694 983.2823 Warning messages: 1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 2: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 3: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 4: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 5: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 6: In max(i) : no non-missing arguments to max; returning -Inf 7: In max(i) : no non-missing arguments to max; returning -Inf 8: In max(try.data.frame[, 4], na.rm = TRUE) : no non-missing arguments to max; returning -Inf > postscript(file="/var/www/html/rcomp/tmp/1ywsf1259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 62 Frequency = 1 [1] 1.878767e+02 8.448494e+01 5.722767e+01 3.312847e+01 2.648070e+01 [6] 1.853591e+01 1.451305e+01 9.981277e+00 2.776004e+00 -7.768377e-03 [11] 3.546560e+00 -1.408687e+02 -1.065281e+03 -2.278751e+03 -1.375073e+04 [16] 7.684879e+02 4.803294e+02 2.441845e+03 -2.017121e+03 -3.677244e+03 [21] 2.376078e+03 1.991580e+03 8.177866e+03 -9.931369e+03 1.054783e+03 [26] -6.334489e+03 -1.031890e+04 -2.985248e+03 -4.927338e+03 2.075025e+03 [31] -3.870631e+03 -2.524154e+03 7.258109e+02 -6.465065e+03 -1.162514e+04 [36] 1.162117e+04 1.767575e+03 -1.066407e+04 6.189981e+03 2.343116e+03 [41] 3.876360e+03 1.472933e+03 1.183831e+02 8.206741e+02 1.542411e+03 [46] -3.650110e+03 4.906013e+03 4.036390e+01 -1.585174e+03 -1.244377e+02 [51] 2.791131e+03 5.387152e+03 5.445444e+03 2.593378e+03 6.516199e+03 [56] 6.292593e+03 2.088487e+03 2.475888e+03 3.427365e+03 -1.086083e+03 [61] 1.510637e+03 1.414239e+03 > postscript(file="/var/www/html/rcomp/tmp/2eh1z1259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/36r7g1259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/45st31259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/5s89k1259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/62cnd1259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/7fk001259678467.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > qqline(resid) > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/8o9fh1259678467.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/9jqrx1259678467.tab") > system("convert tmp/1ywsf1259678467.ps tmp/1ywsf1259678467.png") > system("convert tmp/2eh1z1259678467.ps tmp/2eh1z1259678467.png") > system("convert tmp/36r7g1259678467.ps tmp/36r7g1259678467.png") > system("convert tmp/45st31259678467.ps tmp/45st31259678467.png") > system("convert tmp/5s89k1259678467.ps tmp/5s89k1259678467.png") > system("convert tmp/62cnd1259678467.ps tmp/62cnd1259678467.png") > system("convert tmp/7fk001259678467.ps tmp/7fk001259678467.png") > > > proc.time() user system elapsed 7.623 1.792 11.115