R version 2.9.0 (2009-04-17)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> x <- c(87.28
+ ,87.09
+ ,86.92
+ ,87.59
+ ,90.72
+ ,90.69
+ ,90.3
+ ,89.55
+ ,88.94
+ ,88.41
+ ,87.82
+ ,87.07
+ ,86.82
+ ,86.4
+ ,86.02
+ ,85.66
+ ,85.32
+ ,85.00
+ ,84.67
+ ,83.94
+ ,82.83
+ ,81.95
+ ,81.19
+ ,80.48
+ ,78.86
+ ,69.47
+ ,68.77
+ ,70.06
+ ,73.95
+ ,75.8
+ ,77.79
+ ,81.57
+ ,83.07
+ ,84.34
+ ,85.1
+ ,85.25
+ ,84.26
+ ,83.63
+ ,86.44
+ ,85.3
+ ,84.1
+ ,83.36
+ ,82.48
+ ,81.58
+ ,80.47
+ ,79.34
+ ,82.13
+ ,81.69
+ ,80.7
+ ,79.88
+ ,79.16
+ ,78.38
+ ,77.42
+ ,76.47
+ ,75.46
+ ,74.48
+ ,78.27
+ ,80.7
+ ,79.91
+ ,78.75
+ ,77.78
+ ,81.14
+ ,81.08
+ ,80.03
+ ,78.91
+ ,78.01
+ ,76.9
+ ,75.97
+ ,81.93
+ ,80.27
+ ,78.67
+ ,77.42
+ ,76.16
+ ,74.7
+ ,76.39
+ ,76.04
+ ,74.65
+ ,73.29
+ ,71.79
+ ,74.39
+ ,74.91
+ ,74.54
+ ,73.08
+ ,72.75
+ ,71.32
+ ,70.38
+ ,70.35
+ ,70.01
+ ,69.36
+ ,67.77
+ ,69.26
+ ,69.8
+ ,68.38
+ ,67.62
+ ,68.39
+ ,66.95
+ ,65.21
+ ,66.64
+ ,63.45
+ ,60.66
+ ,62.34
+ ,60.32
+ ,58.64
+ ,60.46
+ ,58.59
+ ,61.87
+ ,61.85
+ ,67.44
+ ,77.06
+ ,91.74
+ ,93.15
+ ,94.15
+ ,93.11
+ ,91.51
+ ,89.96
+ ,88.16
+ ,86.98
+ ,88.03
+ ,86.24
+ ,84.65
+ ,83.23
+ ,81.7
+ ,80.25
+ ,78.8
+ ,77.51
+ ,76.2
+ ,75.04
+ ,74.00
+ ,75.49
+ ,77.14
+ ,76.15
+ ,76.27
+ ,78.19
+ ,76.49
+ ,77.31
+ ,76.65
+ ,74.99
+ ,73.51
+ ,72.07
+ ,70.59
+ ,71.96
+ ,76.29
+ ,74.86
+ ,74.93
+ ,71.9
+ ,71.01
+ ,77.47
+ ,75.78
+ ,76.6
+ ,76.07
+ ,74.57
+ ,73.02
+ ,72.65
+ ,73.16
+ ,71.53
+ ,69.78
+ ,67.98
+ ,69.96
+ ,72.16
+ ,70.47
+ ,68.86
+ ,67.37
+ ,65.87
+ ,72.16
+ ,71.34
+ ,69.93
+ ,68.44
+ ,67.16
+ ,66.01
+ ,67.25
+ ,70.91
+ ,69.75
+ ,68.59
+ ,67.48
+ ,66.31
+ ,64.81
+ ,66.58
+ ,65.97
+ ,64.7
+ ,64.7
+ ,60.94
+ ,59.08
+ ,58.42
+ ,57.77
+ ,57.11
+ ,53.31
+ ,49.96
+ ,49.4
+ ,48.84
+ ,48.3
+ ,47.74
+ ,47.24
+ ,46.76
+ ,46.29
+ ,48.9
+ ,49.23
+ ,48.53
+ ,48.03
+ ,54.34
+ ,53.79
+ ,53.24
+ ,52.96
+ ,52.17
+ ,51.7
+ ,58.55
+ ,78.2
+ ,77.03
+ ,76.19
+ ,77.15
+ ,75.87
+ ,95.47
+ ,109.67
+ ,112.28
+ ,112.01
+ ,107.93
+ ,105.96
+ ,105.06
+ ,102.98
+ ,102.2
+ ,105.23
+ ,101.85
+ ,99.89
+ ,96.23
+ ,94.76
+ ,91.51
+ ,91.63
+ ,91.54
+ ,85.23
+ ,87.83
+ ,87.38
+ ,84.44
+ ,85.19
+ ,84.03
+ ,86.73
+ ,102.52
+ ,104.45
+ ,106.98
+ ,107.02
+ ,99.26
+ ,94.45
+ ,113.44
+ ,157.33
+ ,147.38
+ ,171.89
+ ,171.95
+ ,132.71
+ ,126.02
+ ,121.18
+ ,115.45
+ ,110.48
+ ,117.85
+ ,117.63
+ ,124.65
+ ,109.59
+ ,111.27
+ ,99.78
+ ,98.21
+ ,99.2
+ ,97.97
+ ,89.55
+ ,87.91
+ ,93.34
+ ,94.42
+ ,93.2
+ ,90.29
+ ,91.46
+ ,89.98
+ ,88.35
+ ,88.41
+ ,82.44
+ ,79.89
+ ,75.69
+ ,75.66
+ ,84.5
+ ,96.73
+ ,87.48
+ ,82.39
+ ,83.48
+ ,79.31
+ ,78.16
+ ,72.77
+ ,72.45
+ ,68.46
+ ,67.62
+ ,68.76
+ ,70.07
+ ,68.55
+ ,65.3
+ ,58.96
+ ,59.17
+ ,62.37
+ ,66.28
+ ,55.62
+ ,55.23
+ ,55.85
+ ,56.75
+ ,50.89
+ ,53.88
+ ,52.95
+ ,55.08
+ ,53.61
+ ,58.78
+ ,61.85
+ ,55.91
+ ,53.32
+ ,46.41
+ ,44.57
+ ,50.00
+ ,50.00
+ ,53.36
+ ,46.23
+ ,50.45
+ ,49.07
+ ,45.85
+ ,48.45
+ ,49.96
+ ,46.53
+ ,50.51
+ ,47.58
+ ,48.05
+ ,46.84
+ ,47.67
+ ,49.16
+ ,55.54
+ ,55.82
+ ,58.22
+ ,56.19
+ ,57.77
+ ,63.19
+ ,54.76
+ ,55.74
+ ,62.54
+ ,61.39
+ ,69.6
+ ,79.23
+ ,80.00
+ ,93.68
+ ,107.63
+ ,100.18
+ ,97.3
+ ,90.45
+ ,80.64
+ ,80.58
+ ,75.82
+ ,85.59
+ ,89.35
+ ,89.42
+ ,104.73
+ ,95.32
+ ,89.27
+ ,90.44
+ ,86.97
+ ,79.98
+ ,81.22
+ ,87.35
+ ,83.64
+ ,82.22
+ ,94.4
+ ,102.18)
> par9 = '0'
> par8 = '0'
> par7 = '1'
> par6 = '3'
> par5 = '12'
> par4 = '0'
> par3 = '1'
> par2 = '1'
> par1 = 'FALSE'
> library(lattice)
> if (par1 == 'TRUE') par1 <- TRUE
> if (par1 == 'FALSE') par1 <- FALSE
> par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter
> par3 <- as.numeric(par3) #degree of non-seasonal differencing
> par4 <- as.numeric(par4) #degree of seasonal differencing
> par5 <- as.numeric(par5) #seasonal period
> par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial
> par6 <- 3
> par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial
> par7 <- 3
> par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial
> par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial
> armaGR <- function(arima.out, names, n){
+ try1 <- arima.out$coef
+ try2 <- sqrt(diag(arima.out$var.coef))
+ try.data.frame  <- data.frame(matrix(NA,ncol=4,nrow=length(names)))
+ dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv'))
+ try.data.frame[,1] <- try1
+ for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i]
+ try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2]
+ try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5)
+ vector <- rep(NA,length(names))
+ vector[is.na(try.data.frame[,4])] <- 0
+ maxi <- which.max(try.data.frame[,4])
+ continue <- max(try.data.frame[,4],na.rm=TRUE) > .05
+ vector[maxi] <- 0
+ list(summary=try.data.frame,next.vector=vector,continue=continue)
+ }
> arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){
+ nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3]
+ coeff <- matrix(NA, nrow=nrc*2, ncol=nrc)
+ pval <- matrix(NA, nrow=nrc*2, ncol=nrc)
+ mylist <- rep(list(NULL), nrc)
+ names  <- NULL
+ if(order[1] > 0) names <- paste('ar',1:order[1],sep='')
+ if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') )
+ if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep=''))
+ if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep=''))
+ arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML')
+ mylist[[1]] <- arima.out
+ last.arma <- armaGR(arima.out, names, length(series))
+ mystop <- FALSE
+ i <- 1
+ coeff[i,] <- last.arma[[1]][,1]
+ pval [i,] <- last.arma[[1]][,4]
+ i <- 2
+ aic <- arima.out$aic
+ while(!mystop){
+ mylist[[i]] <- arima.out
+ arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector)
+ aic <- c(aic, arima.out$aic)
+ last.arma <- armaGR(arima.out, names, length(series))
+ mystop <- !last.arma$continue
+ coeff[i,] <- last.arma[[1]][,1]
+ pval [i,] <- last.arma[[1]][,4]
+ i <- i+1
+ }
+ list(coeff, pval, mylist, aic=aic)
+ }
> arimaSelectplot <- function(arimaSelect.out,noms,choix){
+ noms <- names(arimaSelect.out[[3]][[1]]$coef)
+ coeff <- arimaSelect.out[[1]]
+ k <- min(which(is.na(coeff[,1])))-1
+ coeff <- coeff[1:k,]
+ pval  <- arimaSelect.out[[2]][1:k,]
+ aic   <- arimaSelect.out$aic[1:k]
+ coeff[coeff==0] <- NA
+ n <- ncol(coeff)
+ if(missing(choix)) choix <- k
+ layout(matrix(c(1,1,1,2,
+ 3,3,3,2,
+ 3,3,3,4,
+ 5,6,7,7),nr=4),
+ widths=c(10,35,45,15),
+ heights=c(30,30,15,15))
+ couleurs <- rainbow(75)[1:50]#(50)
+ ticks <- pretty(coeff)
+ par(mar=c(1,1,3,1))
+ plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA)
+ points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA)
+ title('aic',line=2)
+ par(mar=c(3,0,0,0))
+ plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1))
+ rect(xleft  = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)),
+ xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)),
+ ytop   = rep(1,50),
+ ybottom= rep(0,50),col=couleurs,border=NA)
+ axis(1,ticks)
+ rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0)
+ text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2)
+ par(mar=c(1,1,3,1))
+ image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks))
+ for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) {
+ if(pval[j,i]<.01)                            symb = 'green'
+ else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange'
+ else if( (pval[j,i]<.1)  & (pval[j,i]>=.05)) symb = 'red'
+ else                                         symb = 'black'
+ polygon(c(i+.5   ,i+.2   ,i+.5   ,i+.5),
+ c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5),
+ col=symb)
+ if(j==choix)  {
+ rect(xleft=i-.5,
+ xright=i+.5,
+ ybottom=k-j+1.5,
+ ytop=k-j+.5,
+ lwd=4)
+ text(i,
+ k-j+1,
+ round(coeff[j,i],2),
+ cex=1.2,
+ font=2)
+ }
+ else{
+ rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5)
+ text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1)
+ }
+ }
+ axis(3,1:n,noms)
+ par(mar=c(0.5,0,0,0.5))
+ plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8))
+ cols <- c('green','orange','red','black')
+ niv  <- c('0','0.01','0.05','0.1')
+ for(i in 0:3){
+ polygon(c(1+2*i   ,1+2*i   ,1+2*i-.5   ,1+2*i),
+ c(.4      ,.7      , .4        , .4),
+ col=cols[i+1])
+ text(2*i,0.5,niv[i+1],cex=1.5)
+ }
+ text(8,.5,1,cex=1.5)
+ text(4,0,'p-value',cex=2)
+ box()
+ residus <- arimaSelect.out[[3]][[choix]]$res
+ par(mar=c(1,2,4,1))
+ acf(residus,main='')
+ title('acf',line=.5)
+ par(mar=c(1,2,4,1))
+ pacf(residus,main='')
+ title('pacf',line=.5)
+ par(mar=c(2,2,4,1))
+ qqnorm(residus,main='')
+ title('qq-norm',line=.5)
+ qqline(residus)
+ residus
+ }
> if (par2 == 0) x <- log(x)
> if (par2 != 0) x <- x^par2
> (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5)))
[[1]]
            [,1]       [,2]       [,3]      [,4]      [,5]      [,6]
 [1,] -0.2650995 -0.4493975 -0.3561952 0.4173324 0.5728349 0.6297041
 [2,]  0.0000000 -0.4519207 -0.4408897 0.1846683 0.5248931 0.6520563
 [3,]         NA         NA         NA        NA        NA        NA
 [4,]         NA         NA         NA        NA        NA        NA
 [5,]         NA         NA         NA        NA        NA        NA
 [6,]         NA         NA         NA        NA        NA        NA
 [7,]         NA         NA         NA        NA        NA        NA
 [8,]         NA         NA         NA        NA        NA        NA
 [9,]         NA         NA         NA        NA        NA        NA
[10,]         NA         NA         NA        NA        NA        NA
[11,]         NA         NA         NA        NA        NA        NA
[12,]         NA         NA         NA        NA        NA        NA

[[2]]
         [,1]    [,2]   [,3]    [,4] [,5] [,6]
 [1,] 0.07341 0.00046 0.0103 0.00092    0    0
 [2,]      NA 0.00000    NaN 0.00001    0  NaN
 [3,]      NA      NA     NA      NA   NA   NA
 [4,]      NA      NA     NA      NA   NA   NA
 [5,]      NA      NA     NA      NA   NA   NA
 [6,]      NA      NA     NA      NA   NA   NA
 [7,]      NA      NA     NA      NA   NA   NA
 [8,]      NA      NA     NA      NA   NA   NA
 [9,]      NA      NA     NA      NA   NA   NA
[10,]      NA      NA     NA      NA   NA   NA
[11,]      NA      NA     NA      NA   NA   NA
[12,]      NA      NA     NA      NA   NA   NA

[[3]]
[[3]][[1]]

Call:
arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, 
    method = "ML")

Coefficients:
          ar1      ar2      ar3     ma1     ma2     ma3
      -0.2651  -0.4494  -0.3562  0.4173  0.5728  0.6297
s.e.   0.1476   0.1271   0.1381  0.1248  0.1011  0.1164

sigma^2 estimated as 26.87:  log likelihood = -1097.31,  aic = 2208.62

[[3]][[2]]

Call:
arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, 
    method = "ML")

Coefficients:
          ar1      ar2      ar3     ma1     ma2     ma3
      -0.2651  -0.4494  -0.3562  0.4173  0.5728  0.6297
s.e.   0.1476   0.1271   0.1381  0.1248  0.1011  0.1164

sigma^2 estimated as 26.87:  log likelihood = -1097.31,  aic = 2208.62

[[3]][[3]]
NULL

[[3]][[4]]
NULL

[[3]][[5]]
NULL

[[3]][[6]]
NULL


$aic
[1] 2208.615 2209.357

Warning messages:
1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean,  :
  some AR parameters were fixed: setting transform.pars = FALSE
2: In log(s2) : NaNs produced
3: In sqrt(diag(arima.out$var.coef)) : NaNs produced
> postscript(file="/var/www/html/rcomp/tmp/1enyu1260462501.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> resid <- arimaSelectplot(selection)
Error in if (pval[j, i] < 0.01) symb = "green" else if ((pval[j, i] <  : 
  missing value where TRUE/FALSE needed
Calls: arimaSelectplot
Execution halted