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Type 'q()' to quit R. > x <- c(0.8,1.1,1.3,1.2,1.3,1.1,1.3,1.2,1.6,1.7,1.5,0.9,1.5,1.4,1.6,1.7,1.4,1.8,1.7,1.4,1.2,1,1.7,2.4,2,2.1,2,1.8,2.7,2.3,1.9,2,2.3,2.8,2.4,2.3,2.7,2.7,2.9,3,2.2,2.3,2.8,2.8,2.8,2.2,2.6,2.8,2.5,2.4,2.3,1.9,1.7,2,2.1,1.7,1.8,1.8,1.8,1.3,1.3,1.3,1.2,1.4,2.2,2.9,3.1,3.5,3.6,4.4,4.1,5.1,5.8,5.9,5.4,5.5,4.8,3.2,2.7,2.1,1.9,0.6,0.7,-0.2,-1,-1.7,-0.7) > par9 = '1' > par8 = '2' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '0' > par3 = '1' > par2 = '1' > par1 = 'FALSE' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + qqline(residus) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0.4798991 -0.02091557 0.1139938 -0.3686570 -0.8220773 -0.3612809 [2,] 0.4497873 0.00000000 0.1088246 -0.3448217 -0.8154658 -0.3597738 [3,] 0.1224260 0.00000000 0.1148571 0.0000000 -0.8441546 -0.3721738 [4,] 0.1315532 0.00000000 0.1193395 0.0000000 -1.0070731 -0.4818300 [5,] 0.1384014 0.00000000 0.0000000 0.0000000 -1.0146595 -0.4943014 [6,] 0.0000000 0.00000000 0.0000000 0.0000000 -1.0238220 -0.4882895 [7,] NA NA NA NA NA NA [8,] NA NA NA NA NA NA [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [13,] NA NA NA NA NA NA [14,] NA NA NA NA NA NA [,7] [1,] -0.2225297 [2,] -0.2277919 [3,] -0.2141049 [4,] 0.0000000 [5,] 0.0000000 [6,] 0.0000000 [7,] NA [8,] NA [9,] NA [10,] NA [11,] NA [12,] NA [13,] NA [14,] NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 0.31787 0.8806 0.35527 0.43899 0.00050 0.05472 0.34553 [2,] 0.31508 NA 0.36130 0.45984 0.00044 0.05508 0.32874 [3,] 0.26105 NA 0.30320 NA 0.00016 0.04260 0.34423 [4,] 0.22465 NA 0.28224 NA 0.00000 0.00003 NA [5,] 0.20521 NA NA NA 0.00000 0.00001 NA [6,] NA NA NA NA 0.00000 0.00002 NA [7,] NA NA NA NA NA NA NA [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.4799 -0.0209 0.1140 -0.3687 -0.8221 -0.3613 -0.2225 s.e. 0.4774 0.1388 0.1226 0.4740 0.2266 0.1853 0.2345 sigma^2 estimated as 0.09358: log likelihood = -27.1, aic = 70.19 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.4799 -0.0209 0.1140 -0.3687 -0.8221 -0.3613 -0.2225 s.e. 0.4774 0.1388 0.1226 0.4740 0.2266 0.1853 0.2345 sigma^2 estimated as 0.09358: log likelihood = -27.1, aic = 70.19 [[3]][[3]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.4498 0 0.1088 -0.3448 -0.8155 -0.3598 -0.2278 s.e. 0.4449 0 0.1185 0.4643 0.2224 0.1848 0.2318 sigma^2 estimated as 0.09363: log likelihood = -27.11, aic = 68.21 [[3]][[4]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.1224 0 0.1149 0 -0.8442 -0.3722 -0.2141 s.e. 0.1082 0 0.1108 0 0.2134 0.1807 0.2250 sigma^2 estimated as 0.09377: log likelihood = -27.37, aic = 66.74 [[3]][[5]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.1316 0 0.1193 0 -1.0071 -0.4818 0 s.e. 0.1075 0 0.1103 0 0.1041 0.1086 0 sigma^2 estimated as 0.0952: log likelihood = -27.82, aic = 65.63 [[3]][[6]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.1384 0 0 0 -1.0147 -0.4943 0 s.e. 0.1084 0 0 0 0.1041 0.1071 0 sigma^2 estimated as 0.09613: log likelihood = -28.4, aic = 64.8 [[3]][[7]] NULL $aic [1] 70.19040 68.21312 66.73800 65.63411 64.80046 64.41071 Warning messages: 1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 2: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 3: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 4: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 5: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE > postscript(file="/var/www/html/rcomp/tmp/1eftt1261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 87 Frequency = 1 [1] 0.000799999 0.189606563 0.101135962 -0.081480957 0.072648682 [6] -0.136465062 0.145297483 -0.081480063 0.264104355 0.028534071 [11] -0.136127219 -0.362824360 0.455059744 0.048838510 0.279434182 [16] -0.012498350 -0.205622419 0.257587193 -0.000661666 -0.324120584 [21] 0.106515524 -0.123410913 0.506602993 0.188353446 -0.015091560 [26] 0.144038931 0.181471471 -0.175892512 0.665510752 -0.182269857 [31] -0.389734814 -0.198106810 0.329918826 0.305699094 0.163445504 [36] 0.284422524 0.247303235 0.011800160 0.190192516 -0.080821396 [41] -0.027692199 -0.103285747 0.059673237 -0.053011869 0.212018124 [46] -0.219977235 0.366655317 0.397468224 -0.153382438 -0.037856750 [51] 0.060500686 -0.404799058 -0.511856350 0.282199052 0.381410516 [56] -0.407260323 0.296809782 -0.396008692 0.258195365 -0.375305556 [61] -0.058721429 -0.086701668 -0.088562631 -0.142232878 0.223277580 [66] 1.025922538 0.402765434 -0.081793085 0.202277503 0.475535969 [71] -0.171953319 0.605686168 0.469840927 -0.025787504 -0.657895028 [76] 0.195296225 -0.001694107 -0.743228790 -0.145020552 -0.357583359 [81] 0.005129608 -0.481476379 -0.136820267 -0.104202317 -0.071401403 [86] -0.586114140 0.526078055 > postscript(file="/var/www/html/rcomp/tmp/2omh31261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/3smxn1261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/4lcis1261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/5jley1261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/68n1a1261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/7num91261090714.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > qqline(resid) > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/8rz271261090714.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/9a7cl1261090714.tab") > > try(system("convert tmp/1eftt1261090714.ps tmp/1eftt1261090714.png",intern=TRUE)) character(0) > try(system("convert tmp/2omh31261090714.ps tmp/2omh31261090714.png",intern=TRUE)) character(0) > try(system("convert tmp/3smxn1261090714.ps tmp/3smxn1261090714.png",intern=TRUE)) character(0) > try(system("convert tmp/4lcis1261090714.ps tmp/4lcis1261090714.png",intern=TRUE)) character(0) > try(system("convert tmp/5jley1261090714.ps tmp/5jley1261090714.png",intern=TRUE)) character(0) > try(system("convert tmp/68n1a1261090714.ps tmp/68n1a1261090714.png",intern=TRUE)) character(0) > try(system("convert tmp/7num91261090714.ps tmp/7num91261090714.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 5.212 1.581 6.663