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Type 'q()' to quit R. > x <- c(112,118,132,129,121,135,148,148,136,119,104,118,115,126,141,135,125,149,170,170,158,133,114,140,145,150,178,163,172,178,199,199,184,162,146,166,171,180,193,181,183,218,230,242,209,191,172,194,196,196,236,235,229,243,264,272,237,211,180,201,204,188,235,227,234,264,302,293,259,229,203,229,242,233,267,269,270,315,364,347,312,274,237,278,284,277,317,313,318,374,413,405,355,306,271,306,315,301,356,348,355,422,465,467,404,347,305,336,340,318,362,348,363,435,491,505,404,359,310,337,360,342,406,396,420,472,548,559,463,407,362,405,417,391,419,461,472,535,622,606,508,461,390,432) > par9 = '1' > par8 = '1' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '1' > par3 = '1' > par2 = '1' > par1 = 'FALSE' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + qqline(residus) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0.5898285 0.2547797 -0.05093098 -0.9756928 -0.8632673 0.7640877 [2,] 0.5799427 0.2287427 0.00000000 -0.9782334 -0.9026163 0.8116094 [3,] NA NA NA NA NA NA [4,] NA NA NA NA NA NA [5,] NA NA NA NA NA NA [6,] NA NA NA NA NA NA [7,] NA NA NA NA NA NA [8,] NA NA NA NA NA NA [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0 0.0119 0.58475 0 0.00908 0.06982 [2,] 0 0.0104 NA 0 0.00040 0.01972 [3,] NA NA NA NA NA NA [4,] NA NA NA NA NA NA [5,] NA NA NA NA NA NA [6,] NA NA NA NA NA NA [7,] NA NA NA NA NA NA [8,] NA NA NA NA NA NA [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sma1 0.5898 0.2548 -0.0509 -0.9757 -0.8633 0.7641 s.e. 0.0911 0.0999 0.0930 0.0296 0.3262 0.4181 sigma^2 estimated as 124.6: log likelihood = -502.98, aic = 1019.95 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sma1 0.5898 0.2548 -0.0509 -0.9757 -0.8633 0.7641 s.e. 0.0911 0.0999 0.0930 0.0296 0.3262 0.4181 sigma^2 estimated as 124.6: log likelihood = -502.98, aic = 1019.95 [[3]][[3]] NULL [[3]][[4]] NULL [[3]][[5]] NULL [[3]][[6]] NULL $aic [1] 1019.953 1018.249 Warning messages: 1: In log(s2) : NaNs produced 2: In log(s2) : NaNs produced 3: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE > postscript(file="/var/www/html/rcomp/tmp/1nfwf1261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 144 Frequency = 1 [1] 0.064663217 0.033565844 0.033806146 0.022551850 0.010753873 [6] 0.021825879 0.030792885 0.026927571 0.012574899 -0.004856135 [11] -0.018746673 -0.077775670 -0.426992939 4.509341191 2.475397933 [16] -2.441245479 -2.472291967 9.185358999 10.879431846 3.050265140 [21] 1.348536868 -6.056630883 -5.056355764 11.108395322 11.641015679 [26] -1.743858022 12.984093086 -2.662533020 17.697709066 -7.280105805 [31] -1.426149866 3.187454394 -0.934104231 2.870339878 4.910777604 [36] -1.762931475 1.624190710 4.761740356 -11.072287392 -1.199120071 [41] -3.482000332 23.756767826 -0.584614652 10.204955809 -11.555897444 [46] 1.036008928 0.933458695 0.180982824 -2.998971251 -8.289310399 [51] 21.647992937 20.322602671 -4.274900215 -15.197714584 6.212140230 [56] 1.740216329 -3.336423469 -8.292738358 -15.098839944 -4.592465079 [61] -0.623345449 -20.162578861 2.410264386 -6.511408054 7.626968187 [66] 11.030579315 19.308320282 -12.035325114 -2.988135811 -3.060442472 [71] 2.579668192 4.847415489 10.986413484 11.087337247 -11.465636770 [76] 5.907451602 -0.578947672 21.011960515 21.483413349 -0.383201475 [81] 1.127029699 -3.064481113 -8.267262882 16.288867341 2.492381685 [86] 3.928088026 11.421773074 1.850823267 5.644875568 12.725909039 [91] -2.542866039 10.016092174 -7.113238409 -12.860843618 -1.308563822 [96] -4.737575313 -0.545515777 -7.300613088 11.489227365 -1.588608045 [101] 0.973376017 16.069847257 8.518554089 14.318888662 -7.334542095 [106] -9.580766994 -5.363712927 -5.520687790 -5.041776965 -10.296572654 [111] -13.880903975 -10.915463464 1.511303811 1.190065375 11.566433513 [116] 14.421205387 -34.489550012 -2.093269728 -7.536932810 -10.695111936 [121] 11.959341313 5.444366252 16.338210460 8.047823865 12.338455876 [126] -11.971025385 16.726688386 7.671855614 3.683972940 -5.034542220 [131] 5.078715270 20.005718374 0.904894611 -5.399332688 -30.480903554 [136] 44.219438309 6.320599867 6.246596412 20.507996041 -18.313094853 [141] -2.716182335 11.057030705 -21.193472316 -5.822056484 > postscript(file="/var/www/html/rcomp/tmp/2dfxf1261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/3u3k51261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/4tej21261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/5uwqy1261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/6rnv61261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/71zu71261335319.ps",horizontal=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > qqline(resid) > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/8qkd21261335319.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/9kjdo1261335320.tab") > > try(system("convert tmp/1nfwf1261335319.ps tmp/1nfwf1261335319.png",intern=TRUE)) character(0) > try(system("convert tmp/2dfxf1261335319.ps tmp/2dfxf1261335319.png",intern=TRUE)) character(0) > try(system("convert tmp/3u3k51261335319.ps tmp/3u3k51261335319.png",intern=TRUE)) character(0) > try(system("convert tmp/4tej21261335319.ps tmp/4tej21261335319.png",intern=TRUE)) character(0) > try(system("convert tmp/5uwqy1261335319.ps tmp/5uwqy1261335319.png",intern=TRUE)) character(0) > try(system("convert tmp/6rnv61261335319.ps tmp/6rnv61261335319.png",intern=TRUE)) character(0) > try(system("convert tmp/71zu71261335319.ps tmp/71zu71261335319.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 4.842 1.034 5.704