R version 2.9.0 (2009-04-17) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- array(list(101.82 + ,107.34 + ,93.63 + ,99.85 + ,101.76 + ,101.68 + ,107.34 + ,93.63 + ,99.91 + ,102.37 + ,101.68 + ,107.34 + ,93.63 + ,99.87 + ,102.38 + ,102.45 + ,107.34 + ,96.13 + ,99.86 + ,102.86 + ,102.45 + ,107.34 + ,96.13 + ,100.10 + ,102.87 + ,102.45 + ,107.34 + ,96.13 + ,100.10 + ,102.92 + ,102.45 + ,107.34 + ,96.13 + ,100.12 + ,102.95 + ,102.45 + ,107.34 + ,96.13 + ,99.95 + ,103.02 + ,102.45 + ,112.60 + ,96.13 + ,99.94 + ,104.08 + ,102.52 + ,112.60 + ,96.13 + ,100.18 + ,104.16 + ,102.52 + ,112.60 + ,96.13 + ,100.31 + ,104.24 + ,102.85 + ,112.60 + ,96.13 + ,100.65 + ,104.33 + ,102.85 + ,112.61 + ,96.13 + ,100.65 + ,104.73 + ,102.85 + ,112.61 + ,96.13 + ,100.69 + ,104.86 + ,103.25 + ,112.61 + ,96.13 + ,101.26 + ,105.03 + ,103.25 + ,112.61 + ,98.73 + ,101.26 + ,105.62 + ,103.25 + ,112.61 + ,98.73 + ,101.38 + ,105.63 + ,103.25 + ,112.61 + ,98.73 + ,101.38 + ,105.63 + ,104.45 + ,112.61 + ,98.73 + ,101.38 + ,105.94 + ,104.45 + ,112.61 + ,98.73 + ,101.44 + ,106.61 + ,104.45 + ,118.65 + ,98.73 + ,101.40 + ,107.69 + ,104.80 + ,118.65 + ,98.73 + ,101.40 + ,107.78 + ,104.80 + ,118.65 + ,98.73 + ,100.58 + ,107.93 + ,105.29 + ,118.65 + ,98.73 + ,100.58 + ,108.48 + ,105.29 + ,114.29 + ,98.73 + ,100.58 + ,108.14 + ,105.29 + ,114.29 + ,98.73 + ,100.59 + ,108.48 + ,105.29 + ,114.29 + ,98.73 + ,100.81 + ,108.48 + ,106.04 + ,114.29 + ,101.67 + ,100.75 + ,108.89 + ,105.94 + ,114.29 + ,101.67 + ,100.75 + ,108.93 + ,105.94 + ,114.29 + ,101.67 + ,100.96 + ,109.21 + ,105.94 + ,114.29 + ,101.67 + ,101.31 + ,109.47 + ,106.28 + ,114.29 + ,101.67 + ,101.64 + ,109.80 + ,106.48 + ,123.33 + ,101.67 + ,101.46 + ,111.73 + ,107.19 + ,123.33 + ,101.67 + ,101.73 + ,111.85 + ,108.14 + ,123.33 + ,101.67 + ,101.73 + ,112.12 + ,108.22 + ,123.33 + ,101.67 + ,101.64 + ,112.15 + ,108.22 + ,123.33 + ,101.67 + ,101.77 + ,112.17 + ,108.61 + ,123.33 + ,101.67 + ,101.74 + ,112.67 + ,108.61 + ,123.33 + ,101.67 + ,101.89 + ,112.80 + ,108.61 + ,123.33 + ,107.94 + ,101.89 + ,113.44 + ,108.61 + ,123.33 + ,107.94 + ,101.93 + ,113.53 + ,109.06 + ,123.33 + ,107.94 + ,101.93 + ,114.53 + ,109.06 + ,123.33 + ,107.94 + ,102.32 + ,114.51 + ,112.93 + ,123.33 + ,107.94 + ,102.41 + ,115.05 + ,115.84 + ,129.03 + ,107.94 + ,103.58 + ,116.67 + ,118.57 + ,128.76 + ,107.94 + ,104.12 + ,117.07 + ,118.57 + ,128.76 + ,107.94 + ,104.10 + ,116.92 + ,118.86 + ,128.76 + ,107.94 + ,104.15 + ,117.00 + ,118.98 + ,128.76 + ,107.94 + ,104.15 + ,117.02 + ,119.27 + ,128.76 + ,107.94 + ,104.16 + ,117.35 + ,119.39 + ,128.76 + ,107.94 + ,102.94 + ,117.36 + ,119.49 + ,128.76 + ,110.30 + ,103.07 + ,117.82 + ,119.59 + ,128.76 + ,110.30 + ,103.04 + ,117.88 + ,120.12 + ,128.76 + ,110.30 + ,103.06 + ,118.24 + ,120.14 + ,128.76 + ,110.30 + ,103.05 + ,118.50 + ,120.14 + ,128.76 + ,110.30 + ,102.95 + ,118.80 + ,120.14 + ,132.63 + ,110.30 + ,102.95 + ,119.76 + ,120.14 + ,132.63 + ,110.30 + ,103.05 + ,120.09) + ,dim=c(5 + ,58) + ,dimnames=list(c('bios' + ,'schouwburg' + ,'eedagsacttractie' + ,'huurDVD' + ,'vrijetijdsbesteding') + ,1:58)) > y <- array(NA,dim=c(5,58),dimnames=list(c('bios','schouwburg','eedagsacttractie','huurDVD','vrijetijdsbesteding'),1:58)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'no' > par3 = '2' > par2 = 'quantiles' > par1 = '5' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Dr. Ian E. Holliday > #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: > #Technical description: > library(party) Loading required package: survival Loading required package: splines Loading required package: grid Loading required package: modeltools Loading required package: stats4 Loading required package: coin Loading required package: mvtnorm Loading required package: zoo Attaching package: 'zoo' The following object(s) are masked from package:base : as.Date.numeric Loading required package: sandwich Loading required package: strucchange Loading required package: vcd Loading required package: MASS Loading required package: colorspace > library(Hmisc) Attaching package: 'Hmisc' The following object(s) are masked from package:survival : untangle.specials The following object(s) are masked from package:base : format.pval, round.POSIXt, trunc.POSIXt, units > par1 <- as.numeric(par1) > par3 <- as.numeric(par3) > x <- data.frame(t(y)) > is.data.frame(x) [1] TRUE > x <- x[!is.na(x[,par1]),] > k <- length(x[1,]) > n <- length(x[,1]) > colnames(x)[par1] [1] "vrijetijdsbesteding" > x[,par1] [1] 101.76 102.37 102.38 102.86 102.87 102.92 102.95 103.02 104.08 104.16 [11] 104.24 104.33 104.73 104.86 105.03 105.62 105.63 105.63 105.94 106.61 [21] 107.69 107.78 107.93 108.48 108.14 108.48 108.48 108.89 108.93 109.21 [31] 109.47 109.80 111.73 111.85 112.12 112.15 112.17 112.67 112.80 113.44 [41] 113.53 114.53 114.51 115.05 116.67 117.07 116.92 117.00 117.02 117.35 [51] 117.36 117.82 117.88 118.24 118.50 118.80 119.76 120.09 > if (par2 == 'kmeans') { + cl <- kmeans(x[,par1], par3) + print(cl) + clm <- matrix(cbind(cl$centers,1:par3),ncol=2) + clm <- clm[sort.list(clm[,1]),] + for (i in 1:par3) { + cl$cluster[cl$cluster==clm[i,2]] <- paste('C',i,sep='') + } + cl$cluster <- as.factor(cl$cluster) + print(cl$cluster) + x[,par1] <- cl$cluster + } > if (par2 == 'quantiles') { + x[,par1] <- cut2(x[,par1],g=par3) + } > if (par2 == 'hclust') { + hc <- hclust(dist(x[,par1])^2, 'cen') + print(hc) + memb <- cutree(hc, k = par3) + dum <- c(mean(x[memb==1,par1])) + for (i in 2:par3) { + dum <- c(dum, mean(x[memb==i,par1])) + } + hcm <- matrix(cbind(dum,1:par3),ncol=2) + hcm <- hcm[sort.list(hcm[,1]),] + for (i in 1:par3) { + memb[memb==hcm[i,2]] <- paste('C',i,sep='') + } + memb <- as.factor(memb) + print(memb) + x[,par1] <- memb + } > if (par2=='equal') { + ed <- cut(as.numeric(x[,par1]),par3,labels=paste('C',1:par3,sep='')) + x[,par1] <- as.factor(ed) + } > table(x[,par1]) [102,109) [109,120] 29 29 > colnames(x) [1] "bios" "schouwburg" "eedagsacttractie" [4] "huurDVD" "vrijetijdsbesteding" > colnames(x)[par1] [1] "vrijetijdsbesteding" > x[,par1] [1] [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [8] [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [15] [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [22] [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [102,109) [29] [102,109) [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [36] [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [43] [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [50] [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [109,120] [57] [109,120] [109,120] Levels: [102,109) [109,120] > if (par2 == 'none') { + m <- ctree(as.formula(paste(colnames(x)[par1],' ~ .',sep='')),data = x) + } > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > if (par2 != 'none') { + m <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data = x) + if (par4=='yes') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'10-Fold Cross Validation',3+2*par3,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'',1,TRUE) + a<-table.element(a,'Prediction (training)',par3+1,TRUE) + a<-table.element(a,'Prediction (testing)',par3+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Actual',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) + a<-table.element(a,'CV',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) + a<-table.element(a,'CV',1,TRUE) + a<-table.row.end(a) + for (i in 1:10) { + ind <- sample(2, nrow(x), replace=T, prob=c(0.9,0.1)) + m.ct <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data =x[ind==1,]) + if (i==1) { + m.ct.i.pred <- predict(m.ct, newdata=x[ind==1,]) + m.ct.i.actu <- x[ind==1,par1] + m.ct.x.pred <- predict(m.ct, newdata=x[ind==2,]) + m.ct.x.actu <- x[ind==2,par1] + } else { + m.ct.i.pred <- c(m.ct.i.pred,predict(m.ct, newdata=x[ind==1,])) + m.ct.i.actu <- c(m.ct.i.actu,x[ind==1,par1]) + m.ct.x.pred <- c(m.ct.x.pred,predict(m.ct, newdata=x[ind==2,])) + m.ct.x.actu <- c(m.ct.x.actu,x[ind==2,par1]) + } + } + print(m.ct.i.tab <- table(m.ct.i.actu,m.ct.i.pred)) + numer <- 0 + for (i in 1:par3) { + print(m.ct.i.tab[i,i] / sum(m.ct.i.tab[i,])) + numer <- numer + m.ct.i.tab[i,i] + } + print(m.ct.i.cp <- numer / sum(m.ct.i.tab)) + print(m.ct.x.tab <- table(m.ct.x.actu,m.ct.x.pred)) + numer <- 0 + for (i in 1:par3) { + print(m.ct.x.tab[i,i] / sum(m.ct.x.tab[i,])) + numer <- numer + m.ct.x.tab[i,i] + } + print(m.ct.x.cp <- numer / sum(m.ct.x.tab)) + for (i in 1:par3) { + a<-table.row.start(a) + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + for (jjj in 1:par3) a<-table.element(a,m.ct.i.tab[i,jjj]) + a<-table.element(a,round(m.ct.i.tab[i,i]/sum(m.ct.i.tab[i,]),4)) + for (jjj in 1:par3) a<-table.element(a,m.ct.x.tab[i,jjj]) + a<-table.element(a,round(m.ct.x.tab[i,i]/sum(m.ct.x.tab[i,]),4)) + a<-table.row.end(a) + } + a<-table.row.start(a) + a<-table.element(a,'Overall',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,'-') + a<-table.element(a,round(m.ct.i.cp,4)) + for (jjj in 1:par3) a<-table.element(a,'-') + a<-table.element(a,round(m.ct.x.cp,4)) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/1q9za1291974388.tab") + } + } > m Conditional inference tree with 3 terminal nodes Response: as.factor(vrijetijdsbesteding) Inputs: bios, schouwburg, eedagsacttractie, huurDVD Number of observations: 58 1) eedagsacttractie <= 98.73; criterion = 1, statistic = 40.557 2)* weights = 27 1) eedagsacttractie > 98.73 3) schouwburg <= 123.33; criterion = 0.977, statistic = 7.636 4)* weights = 17 3) schouwburg > 123.33 5)* weights = 14 > postscript(file="/var/www/html/rcomp/tmp/2jizd1291974388.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(m) > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/3jizd1291974388.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(x[,par1] ~ as.factor(where(m)),main='Response by Terminal Node',xlab='Terminal Node',ylab='Response') > dev.off() null device 1 > if (par2 == 'none') { + forec <- predict(m) + result <- as.data.frame(cbind(x[,par1],forec,x[,par1]-forec)) + colnames(result) <- c('Actuals','Forecasts','Residuals') + print(result) + } > if (par2 != 'none') { + print(cbind(as.factor(x[,par1]),predict(m))) + myt <- table(as.factor(x[,par1]),predict(m)) + print(myt) + } [,1] [,2] [1,] 1 1 [2,] 1 1 [3,] 1 1 [4,] 1 1 [5,] 1 1 [6,] 1 1 [7,] 1 1 [8,] 1 1 [9,] 1 1 [10,] 1 1 [11,] 1 1 [12,] 1 1 [13,] 1 1 [14,] 1 1 [15,] 1 1 [16,] 1 1 [17,] 1 1 [18,] 1 1 [19,] 1 1 [20,] 1 1 [21,] 1 1 [22,] 1 1 [23,] 1 1 [24,] 1 1 [25,] 1 1 [26,] 1 1 [27,] 1 1 [28,] 1 2 [29,] 1 2 [30,] 2 2 [31,] 2 2 [32,] 2 2 [33,] 2 2 [34,] 2 2 [35,] 2 2 [36,] 2 2 [37,] 2 2 [38,] 2 2 [39,] 2 2 [40,] 2 2 [41,] 2 2 [42,] 2 2 [43,] 2 2 [44,] 2 2 [45,] 2 2 [46,] 2 2 [47,] 2 2 [48,] 2 2 [49,] 2 2 [50,] 2 2 [51,] 2 2 [52,] 2 2 [53,] 2 2 [54,] 2 2 [55,] 2 2 [56,] 2 2 [57,] 2 2 [58,] 2 2 [102,109) [109,120] [102,109) 27 2 [109,120] 0 29 > postscript(file="/var/www/html/rcomp/tmp/4t9yy1291974388.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if(par2=='none') { + op <- par(mfrow=c(2,2)) + plot(density(result$Actuals),main='Kernel Density Plot of Actuals') + plot(density(result$Residuals),main='Kernel Density Plot of Residuals') + plot(result$Forecasts,result$Actuals,main='Actuals versus Predictions',xlab='Predictions',ylab='Actuals') + plot(density(result$Forecasts),main='Kernel Density Plot of Predictions') + par(op) + } > if(par2!='none') { + plot(myt,main='Confusion Matrix',xlab='Actual',ylab='Predicted') + } > dev.off() null device 1 > if (par2 == 'none') { + detcoef <- cor(result$Forecasts,result$Actuals) + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Goodness of Fit',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Correlation',1,TRUE) + a<-table.element(a,round(detcoef,4)) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'R-squared',1,TRUE) + a<-table.element(a,round(detcoef*detcoef,4)) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'RMSE',1,TRUE) + a<-table.element(a,round(sqrt(mean((result$Residuals)^2)),4)) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/5xae41291974388.tab") + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Actuals, Predictions, and Residuals',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'#',header=TRUE) + a<-table.element(a,'Actuals',header=TRUE) + a<-table.element(a,'Forecasts',header=TRUE) + a<-table.element(a,'Residuals',header=TRUE) + a<-table.row.end(a) + for (i in 1:length(result$Actuals)) { + a<-table.row.start(a) + a<-table.element(a,i,header=TRUE) + a<-table.element(a,result$Actuals[i]) + a<-table.element(a,result$Forecasts[i]) + a<-table.element(a,result$Residuals[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/6iavs1291974388.tab") + } > if (par2 != 'none') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Confusion Matrix (predicted in columns / actuals in rows)',par3+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'',1,TRUE) + for (i in 1:par3) { + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + } + a<-table.row.end(a) + for (i in 1:par3) { + a<-table.row.start(a) + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + for (j in 1:par3) { + a<-table.element(a,myt[i,j]) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/7tkuv1291974388.tab") + } > > try(system("convert tmp/2jizd1291974388.ps tmp/2jizd1291974388.png",intern=TRUE)) character(0) > try(system("convert tmp/3jizd1291974388.ps tmp/3jizd1291974388.png",intern=TRUE)) character(0) > try(system("convert tmp/4t9yy1291974388.ps tmp/4t9yy1291974388.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 2.053 0.505 4.468