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Type 'q()' to quit R. > x <- c(44164,40399,36763,37903,35532,35533,32110,33374,35462,33508,36080,34560,38737,38144,37594,36424,36843,37246,38661,40454,44928,48441,48140,45998,47369,49554,47510,44873,45344,42413,36912,43452,42142,44382,43636,44167,44423,42868,43908,42013,38846,35087,33026,34646,37135,37985,43121,43722,43630,42234,39351,39327,35704,30466,28155,29257,29998,32529,34787,33855,34556,31348,30805,28353,24514,21106,21346,23335,24379,26290,30084,29429,30632,27349,27264,27474,24482,21453,18788,19282,19713,21917,23812,23785,24696,24562,23580,24939,23899,21454,19761,19815,20780,23462,25005,24725,26198,27543,26471,26558,25317,22896) > par9 = '1' > par8 = '2' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '1' > par3 = '1' > par2 = '1' > par1 = 'FALSE' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Prof. Dr. P. Wessa > #To cite this work: AUTHOR(S), (YEAR), YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > #Technical description: Write here your technical program description (don't use hard returns!) > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + qqline(residus) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0.2740438 0.12879968 0.05136351 -0.4057160 0.1733686 0.009984533 [2,] 0.2786293 0.12908083 0.05136933 -0.4097071 0.1712040 0.000000000 [3,] 0.4582161 0.15795439 0.00000000 -0.5801521 0.1639523 0.000000000 [4,] 0.0000000 0.09063081 0.00000000 -0.1218789 0.1522347 0.000000000 [5,] 0.0000000 0.00000000 0.00000000 -0.1059891 0.1320149 0.000000000 [6,] 0.0000000 0.00000000 0.00000000 -0.0785738 0.0000000 0.000000000 [7,] 0.0000000 0.00000000 0.00000000 0.0000000 0.0000000 0.000000000 [8,] NA NA NA NA NA NA [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [13,] NA NA NA NA NA NA [14,] NA NA NA NA NA NA [,7] [1,] -0.9998119 [2,] -0.9999732 [3,] -1.0002930 [4,] -1.0000173 [5,] -1.0000202 [6,] -0.9976908 [7,] -1.0000274 [8,] NA [9,] NA [10,] NA [11,] NA [12,] NA [13,] NA [14,] NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 0.68785 0.35454 0.69461 0.54877 0.21862 0.9441 0.00002 [2,] 0.67887 0.35125 0.69436 0.53953 0.21240 NA 0.00004 [3,] 0.35736 0.17670 NA 0.24396 0.22421 NA 0.00003 [4,] NA 0.41687 NA 0.27727 0.25099 NA 0.00002 [5,] NA NA NA 0.29645 0.30955 NA 0.00001 [6,] NA NA NA 0.43494 NA NA 0.18167 [7,] NA NA NA NA NA NA 0.01383 [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.274 0.1288 0.0514 -0.4057 0.1734 0.010 -0.9998 s.e. 0.680 0.1384 0.1304 0.6742 0.1400 0.142 0.2249 sigma^2 estimated as 2954844: log likelihood = -800.16, aic = 1616.32 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.274 0.1288 0.0514 -0.4057 0.1734 0.010 -0.9998 s.e. 0.680 0.1384 0.1304 0.6742 0.1400 0.142 0.2249 sigma^2 estimated as 2954844: log likelihood = -800.16, aic = 1616.32 [[3]][[3]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.2786 0.1291 0.0514 -0.4097 0.1712 0 -1.0000 s.e. 0.6709 0.1378 0.1303 0.6654 0.1364 0 0.2303 sigma^2 estimated as 2946138: log likelihood = -800.16, aic = 1614.33 [[3]][[4]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.4582 0.1580 0 -0.5802 0.164 0 -1.0003 s.e. 0.4954 0.1161 0 0.4949 0.134 0 0.2288 sigma^2 estimated as 2945131: log likelihood = -800.23, aic = 1612.46 [[3]][[5]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0.0906 0 -0.1219 0.1522 0 -1.0000 s.e. 0 0.1112 0 0.1115 0.1318 0 0.2231 sigma^2 estimated as 2950421: log likelihood = -800.42, aic = 1610.84 [[3]][[6]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 0 -0.106 0.1320 0 -1.000 s.e. 0 0 0 0.101 0.1292 0 0.219 sigma^2 estimated as 2959165: log likelihood = -800.75, aic = 1609.5 [[3]][[7]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 0 -0.0786 0 0 -0.9977 s.e. 0 0 0 0.1002 0 0 0.7417 sigma^2 estimated as 2910558: log likelihood = -801.29, aic = 1608.58 $aic [1] 1616.325 1614.329 1612.460 1610.838 1609.504 1608.578 1607.185 Warning messages: 1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 2: In log(s2) : NaNs produced 3: In log(s2) : NaNs produced 4: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 5: In log(s2) : NaNs produced 6: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 7: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 8: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 9: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE > postscript(file="/var/www/html/rcomp/tmp/191aa1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 102 Frequency = 1 [1] 25.4980888 8.4867281 2.4828818 2.8560115 0.1336562 [6] 0.1121282 -3.0906125 -1.5153323 0.6286435 -1.2930096 [11] 1.2824225 -21.2477129 -147.8260667 2238.5131351 2359.8749984 [16] -1449.9883501 1861.0449988 430.6618869 3458.6015005 646.0587290 [21] 1739.6616345 4006.6898020 -1719.2840623 -575.6881253 -2128.2714641 [26] 3419.7123955 308.5022251 -2119.1374474 1016.2545622 -2481.2677034 [31] -3871.0889002 3792.3201160 -3455.0108435 922.2524368 -1465.6965302 [36] 1815.4604420 -2017.7770557 -869.4751015 2633.8917822 -665.3046448 [41] -2370.1779457 -2715.1092523 169.8240358 -1355.7821451 533.5429814 [46] -319.1576306 3987.1192437 1739.1260951 -1689.1855429 -543.9479258 [51] -1462.5186442 884.8415975 -2134.2308400 -3450.9221290 -198.2242835 [56] -1539.9356066 -1190.4656736 1132.0359099 619.6312912 -219.6074606 [61] -719.2214632 -2050.4176998 818.2451549 -1338.4207480 -2101.9168472 [66] -1173.3993245 2298.7611209 -253.3530646 -616.1972381 385.6200151 [71] 1867.3808060 180.8241537 -95.0370438 -1763.0415772 1113.6762346 [76] 1369.3785406 -794.8758955 -563.2787716 -716.1530634 -1808.7370693 [81] -1214.2522399 542.9932045 -164.8905129 597.9443803 -312.9226430 [86] 1404.0091937 354.6979281 2214.0173836 1220.4371541 209.0850257 [91] 344.8267521 -1902.6225364 -577.8933007 955.1002353 -434.3445823 [96] 257.9887600 232.8730682 2673.7862495 340.6549287 754.1089970 [101] 792.4205914 184.7403416 > postscript(file="/var/www/html/rcomp/tmp/291aa1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/3karv1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/4karv1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/5karv1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/6karv1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/www/html/rcomp/tmp/7vj8x1292014220.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > qqline(resid) > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/8rbo61292014220.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/9uc841292014221.tab") > > try(system("convert tmp/191aa1292014220.ps tmp/191aa1292014220.png",intern=TRUE)) character(0) > try(system("convert tmp/291aa1292014220.ps tmp/291aa1292014220.png",intern=TRUE)) character(0) > try(system("convert tmp/3karv1292014220.ps tmp/3karv1292014220.png",intern=TRUE)) character(0) > try(system("convert tmp/4karv1292014220.ps tmp/4karv1292014220.png",intern=TRUE)) character(0) > try(system("convert tmp/5karv1292014220.ps tmp/5karv1292014220.png",intern=TRUE)) character(0) > try(system("convert tmp/6karv1292014220.ps tmp/6karv1292014220.png",intern=TRUE)) character(0) > try(system("convert tmp/7vj8x1292014220.ps tmp/7vj8x1292014220.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 8.803 1.772 19.932