R version 2.9.0 (2009-04-17) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- array(list('A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + 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,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'B' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'B' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'B' + ,'A' + ,'A' + ,'B' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A' + ,'A') + ,dim=c(7 + ,154) + ,dimnames=list(c('CM' + ,'D' + ,'PE' + ,'PC' + ,'PS' + ,'O' + ,'H') + ,1:154)) > y <- array(NA,dim=c(7,154),dimnames=list(c('CM','D','PE','PC','PS','O','H'),1:154)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } There were 50 or more warnings (use warnings() to see the first 50) > par3 = 'Exact Pearson Chi-Squared by Simulation' > par2 = '6' > par1 = '5' > main = 'Association Plot' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Dr. Ian E. Holliday > #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: > #Technical description: > library(vcd) Loading required package: MASS Loading required package: grid Loading required package: colorspace > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > simulate.p.value=FALSE > if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE > x <- t(x) > (z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,])))) [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] "A" "B" "B" "B" "A" "A" "B" [2,] "A" "B" "B" "B" "A" "A" "B" [3,] "A" "B" "A" "B" "A" "A" "A" [4,] "A" "B" "B" "B" "A" "A" "A" [5,] "A" "B" "B" "B" "A" "A" "A" [6,] "A" "B" "B" "B" "A" "A" "B" [7,] "A" "B" "B" "B" "A" "A" "A" [8,] "A" "B" "B" "B" "A" "A" "A" [9,] "A" "A" "B" "B" "A" "A" "B" [10,] "A" "B" "B" "B" "A" "A" "B" [11,] "A" "B" "B" "B" "A" "A" "B" [12,] "A" "B" "A" "B" "A" "A" "A" [13,] "A" "B" "B" "B" "A" "A" "B" [14,] "A" "B" "B" "B" "A" "A" "B" [15,] "A" "B" "B" "B" "A" "A" "A" [16,] "B" "B" "A" "B" "A" "A" "A" [17,] "A" "B" "B" "B" "A" "A" "B" [18,] "A" "B" "B" "B" "B" "B" "B" [19,] "A" "B" "A" "B" "A" "A" "B" [20,] "A" "B" "A" "B" "A" "A" "A" [21,] "A" "A" "B" "B" "A" "A" "B" [22,] "A" "B" "B" "B" "A" "A" "B" [23,] "A" "B" "B" "B" "A" "A" "B" [24,] "A" "B" "B" "B" "A" "A" "B" [25,] "A" "B" "A" "B" "A" "A" "B" [26,] "A" "B" "A" "B" "A" "A" "A" [27,] "A" "B" "B" "B" "A" "A" "B" [28,] "A" "B" "A" "B" "A" "A" "B" [29,] "A" "B" "B" "B" "A" "A" "A" [30,] "A" "A" "A" "A" "A" "A" "B" [31,] "A" "B" "A" "B" "A" "A" "B" [32,] "A" "B" "B" "B" "A" "A" "B" [33,] "A" "B" "A" "B" "A" "A" "A" [34,] "A" "A" "B" "B" "A" "A" "B" [35,] "A" "B" "B" "B" "A" "A" "A" [36,] "B" "A" "B" "B" "A" "A" "B" [37,] "A" "B" "A" "B" "A" "A" "B" [38,] "A" "B" "B" "B" "A" "A" "B" [39,] "A" "B" "A" "B" "A" "A" "A" [40,] "A" "B" "B" "B" "A" "A" "A" [41,] "A" "B" "A" "B" "B" "A" "B" [42,] "A" "B" "A" "B" "A" "A" "A" [43,] "A" "B" "B" "B" "A" "A" "B" [44,] "A" "B" "B" "B" "A" "A" "A" [45,] "A" "B" "B" "B" "A" "A" "B" [46,] "A" "B" "B" "B" "A" "A" "B" [47,] "A" "B" "B" "B" "A" "A" "A" [48,] "A" "B" "A" "B" "A" "A" "B" [49,] "A" "A" "B" "B" "A" "A" "B" [50,] "A" "B" "B" "B" "A" "A" "B" [51,] "A" "B" "B" "B" "A" "A" "A" [52,] "B" "B" "B" "B" "A" "A" "A" [53,] "A" "B" "A" "A" "A" "A" "B" [54,] "A" "B" "B" "B" "A" "A" "B" [55,] "A" "B" "B" "B" "A" "A" "B" [56,] "A" "B" "B" "B" "A" "A" "A" [57,] "B" "B" "B" "B" "A" "A" "A" [58,] "B" "A" "B" "B" "B" "A" "A" [59,] "A" "B" "B" "B" "A" "A" "A" [60,] "A" "B" "B" "B" "A" "A" "B" [61,] "A" "B" "B" "B" "A" "A" "B" [62,] "A" "B" "B" "B" "A" "A" "A" [63,] "B" "B" "B" "B" "A" "A" "A" [64,] "A" "B" "B" "B" "A" "A" "B" [65,] "A" "B" "B" "B" "A" "A" "A" [66,] "A" "B" "B" "B" "A" "A" "B" [67,] "B" "B" "B" "B" "A" "A" "B" [68,] "A" "B" "B" "B" "A" "A" "A" [69,] "A" "B" "B" "B" "A" "A" "A" [70,] "A" "B" "B" "B" "A" "A" "A" [71,] "A" "B" "A" "B" "A" "A" "A" [72,] "A" "A" "A" "B" "A" "A" "A" [73,] "A" "B" "A" "B" "A" "A" "B" [74,] "A" "B" "B" "B" "A" "A" "A" [75,] "A" "B" "B" "B" "A" "A" "B" [76,] "A" "B" "B" "B" "A" "A" "B" [77,] "A" "B" "B" "B" "A" "A" "B" [78,] "A" "B" "B" "B" "A" "A" "B" [79,] "A" "B" "B" "B" "A" "A" "A" [80,] "A" "B" "B" "B" "A" "A" "B" [81,] "A" "B" "A" "B" "A" "A" "A" [82,] "A" "B" "B" "B" "A" "A" "B" [83,] "A" "B" "A" "B" "A" "A" "A" [84,] "A" "B" "B" "B" "A" "A" "A" [85,] "A" "B" "B" "B" "A" "A" "A" [86,] "A" "B" "A" "B" "A" "A" "B" [87,] "A" "B" "B" "B" "A" "A" "A" [88,] "A" "B" "B" "B" "A" "A" "A" [89,] "A" "B" "B" "B" "A" "A" "B" [90,] "A" "B" "A" "B" "A" "A" "A" [91,] "A" "B" "B" "B" "A" "A" "A" [92,] "A" "B" "A" "B" "A" "A" "A" [93,] "A" "A" "B" "B" "A" "A" "A" [94,] "A" "B" "A" "B" "A" "A" "B" [95,] "A" "B" "B" "B" "A" "A" "B" [96,] "A" "B" "B" "B" "A" "A" "B" [97,] "A" "B" "A" "B" "A" "A" "A" [98,] "A" "B" "B" "B" "A" "A" "A" [99,] "A" "B" "A" "B" "A" "A" "A" [100,] "A" "B" "A" "B" "A" "A" "A" [101,] "A" "B" "B" "B" "A" "A" "A" [102,] "A" "B" "B" "B" "A" "A" "B" [103,] "A" "B" "B" "B" "A" "A" "A" [104,] "A" "B" "B" "B" "A" "A" "A" [105,] "A" "B" "A" "B" "A" "A" "A" [106,] "A" "B" "B" "B" "A" "A" "A" [107,] "B" "B" "B" "B" "B" "A" "A" [108,] "A" "B" "A" "B" "A" "A" "A" [109,] "A" "B" "B" "B" "A" "A" "B" [110,] "A" "B" "A" "B" "A" "A" "A" [111,] "B" "B" "B" "B" "A" "A" "B" [112,] "A" "B" "B" "B" "A" "A" "B" [113,] "A" "B" "B" "B" "A" "A" "A" [114,] "A" "B" "A" "B" "A" "A" "B" [115,] "A" "B" "B" "B" "B" "B" "A" [116,] "A" "B" "B" "B" "A" "A" "B" [117,] "B" "B" "B" "B" "A" "A" "A" [118,] "A" "B" "B" "B" "A" "A" "B" [119,] "A" "B" "B" "B" "A" "A" "A" [120,] "A" "A" "B" "B" "A" "A" "B" [121,] "A" "B" "A" "B" "A" "A" "B" [122,] "A" "B" "B" "B" "A" "A" "A" [123,] "A" "B" "B" "B" "A" "A" "A" [124,] "A" "B" "B" "B" "A" "A" "B" [125,] "A" "B" "B" "B" "A" "A" "A" [126,] "A" "B" "B" "B" "A" "A" "B" [127,] "A" "B" "B" "B" "A" "A" "A" [128,] "A" "B" "B" "B" "A" "A" "A" [129,] "A" "B" "B" "B" "A" "A" "B" [130,] "A" "B" "B" "B" "A" "A" "B" [131,] "A" "B" "A" "B" "A" "A" "B" [132,] "A" "B" "B" "B" "A" "A" "B" [133,] "A" "B" "B" "B" "A" "B" "B" [134,] "A" "B" "B" "B" "A" "A" "A" [135,] "A" "B" "B" "B" "A" "A" "B" [136,] "A" "B" "B" "B" "A" "B" "A" [137,] "A" "B" "A" "B" "A" "A" "A" [138,] "A" "B" "A" "A" "A" "B" "B" [139,] "A" "A" "B" "B" "A" "A" "B" [140,] "A" "B" "A" "B" "A" "A" "A" [141,] "A" "A" "B" "B" "A" "A" "B" [142,] "A" "B" "A" "B" "A" "A" "B" [143,] "A" "B" "B" "B" "A" "A" "A" [144,] "A" "B" "B" "B" "B" "B" "B" [145,] "A" "B" "B" "B" "A" "A" "B" [146,] "A" "B" "B" "B" "A" "A" "A" [147,] "A" "A" "A" "B" "A" "A" "A" [148,] "A" "B" "A" "B" "A" "A" "A" [149,] "A" "B" "B" "B" "A" "B" "A" [150,] "A" "B" "A" "B" "A" "A" "B" [151,] "A" "B" "B" "B" "A" "A" "B" [152,] "A" "B" "B" "B" "A" "A" "B" [153,] "A" "B" "A" "B" "A" "A" "B" [154,] "A" "A" "A" "A" "A" "A" "A" > (table1 <- table(z[,cat1],z[,cat2])) A B A 144 4 B 3 3 > (V1<-dimnames(y)[[1]][cat1]) [1] "PS" > (V2<-dimnames(y)[[1]][cat2]) [1] "O" > postscript(file="/var/www/html/rcomp/tmp/1goi51292181277.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T) > dev.off() null device 1 > > #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/html/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ', 1,TRUE) > for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } > a<-table.row.end(a) > for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, table1[nr, nc], 1, FALSE) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/2ug1o1292181278.tab") > (cst<-chisq.test(table1, simulate.p.value=simulate.p.value) ) Pearson's Chi-squared test with simulated p-value (based on 2000 replicates) data: table1 X-squared = 29.7297, df = NA, p-value = 0.0009995 > if (par3 == 'McNemar Chi-Squared') { + (cst <- mcnemar.test(table1)) + } > if (par3 != 'McNemar Chi-Squared') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a, ' ', 1,TRUE) + for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } + a<-table.row.end(a) + for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/html/rcomp/tmp/3gzic1292181278.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Statistical Results',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, cst$method, 2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'Chi Square Statistic', 1, TRUE) > a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE) > a<-table.row.end(a) > if(!simulate.p.value){ + a<-table.row.start(a) + a<-table.element(a, 'Degrees of Freedom', 1, TRUE) + a<-table.element(a, cst$parameter, 1,FALSE) + a<-table.row.end(a) + } > a<-table.row.start(a) > a<-table.element(a, 'P value', 1, TRUE) > a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/www/html/rcomp/tmp/4jzyi1292181278.tab") > > try(system("convert tmp/1goi51292181277.ps tmp/1goi51292181277.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.218 0.210 2.469