R version 2.9.0 (2009-04-17)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(NA
+ ,NA
+ ,3.65
+ ,15.71
+ ,15.56
+ ,6.47
+ ,3.00
+ ,5.00
+ ,3.00
+ ,6.30
+ ,0.69
+ ,1.50
+ ,6.91
+ ,8.79
+ ,3.74
+ ,3.00
+ ,1.00
+ ,3.00
+ ,NA
+ ,NA
+ ,2.64
+ ,8.13
+ ,10.70
+ ,4.09
+ ,1.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,NA
+ ,NA
+ ,-0.08
+ ,8.65
+ ,3.22
+ ,5.00
+ ,2.00
+ ,3.00
+ ,2.10
+ ,0.59
+ ,4.23
+ ,14.75
+ ,15.34
+ ,6.44
+ ,3.00
+ ,5.00
+ ,4.00
+ ,9.10
+ ,-0.36
+ ,3.30
+ ,9.26
+ ,12.10
+ ,5.19
+ ,4.00
+ ,4.00
+ ,4.00
+ ,15.80
+ ,1.36
+ ,2.94
+ ,-3.77
+ ,-1.20
+ ,3.56
+ ,1.00
+ ,1.00
+ ,1.00
+ ,5.20
+ ,0.00
+ ,3.41
+ ,11.98
+ ,12.04
+ ,5.97
+ ,4.00
+ ,5.00
+ ,4.00
+ ,10.90
+ ,1.28
+ ,3.33
+ ,8.10
+ ,10.15
+ ,4.14
+ ,1.00
+ ,2.00
+ ,1.00
+ ,8.30
+ ,0.34
+ ,3.91
+ ,10.86
+ ,12.99
+ ,5.44
+ ,1.00
+ ,1.00
+ ,1.00
+ ,11.00
+ ,0.41
+ ,1.95
+ ,-0.86
+ ,8.76
+ ,4.72
+ ,5.00
+ ,4.00
+ ,4.00
+ ,3.20
+ ,-0.36
+ ,3.40
+ ,13.05
+ ,12.96
+ ,5.64
+ ,5.00
+ ,5.00
+ ,5.00
+ ,7.60
+ ,0.99
+ ,NA
+ ,-0.60
+ ,7.78
+ ,NA
+ ,2.00
+ ,1.00
+ ,2.00
+ ,NA
+ ,NA
+ ,3.69
+ ,12.14
+ ,12.95
+ ,5.90
+ ,5.00
+ ,5.00
+ ,5.00
+ ,6.30
+ ,0.74
+ ,1.25
+ ,-2.59
+ ,7.09
+ ,3.74
+ ,1.00
+ ,1.00
+ ,1.00
+ ,8.60
+ ,NA
+ ,3.91
+ ,8.01
+ ,10.13
+ ,3.33
+ ,2.00
+ ,2.00
+ ,2.00
+ ,6.60
+ ,1.41
+ ,1.79
+ ,-0.24
+ ,8.16
+ ,3.74
+ ,2.00
+ ,2.00
+ ,2.00
+ ,9.50
+ ,0.18
+ ,2.34
+ ,-1.61
+ ,8.52
+ ,4.79
+ ,2.00
+ ,2.00
+ ,2.00
+ ,4.80
+ ,0.26
+ ,3.53
+ ,7.25
+ ,9.77
+ ,NA
+ ,1.00
+ ,2.00
+ ,1.00
+ ,12.00
+ ,1.81
+ ,1.95
+ ,11.00
+ ,11.30
+ ,NA
+ ,1.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,-1.20
+ ,3.33
+ ,13.18
+ ,13.43
+ ,5.99
+ ,5.00
+ ,5.00
+ ,5.00
+ ,3.30
+ ,-0.69
+ ,3.00
+ ,10.23
+ ,11.65
+ ,5.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,11.00
+ ,1.22
+ ,1.36
+ ,-2.12
+ ,6.91
+ ,2.77
+ ,3.00
+ ,1.00
+ ,2.00
+ ,NA
+ ,NA
+ ,3.67
+ ,12.24
+ ,12.91
+ ,5.53
+ ,1.00
+ ,4.00
+ ,1.00
+ ,4.70
+ ,0.41
+ ,3.71
+ ,11.35
+ ,12.69
+ ,5.74
+ ,1.00
+ ,3.00
+ ,1.00
+ ,NA
+ ,NA
+ ,2.79
+ ,10.50
+ ,11.69
+ ,4.14
+ ,1.00
+ ,1.00
+ ,1.00
+ ,10.40
+ ,1.22
+ ,2.20
+ ,-2.29
+ ,8.29
+ ,3.33
+ ,5.00
+ ,1.00
+ ,3.00
+ ,7.40
+ ,-0.22
+ ,2.03
+ ,6.95
+ ,8.61
+ ,4.22
+ ,5.00
+ ,3.00
+ ,4.00
+ ,2.10
+ ,-0.22
+ ,3.83
+ ,13.16
+ ,13.39
+ ,5.82
+ ,5.00
+ ,5.00
+ ,5.00
+ ,NA
+ ,NA
+ ,3.11
+ ,11.51
+ ,11.96
+ ,4.61
+ ,1.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,NA
+ ,2.79
+ ,10.46
+ ,10.93
+ ,3.50
+ ,3.00
+ ,5.00
+ ,4.00
+ ,7.70
+ ,0.34
+ ,0.96
+ ,-5.30
+ ,-1.97
+ ,3.07
+ ,5.00
+ ,2.00
+ ,4.00
+ ,17.90
+ ,0.69
+ ,3.18
+ ,-4.61
+ ,-1.39
+ ,3.91
+ ,1.00
+ ,1.00
+ ,1.00
+ ,6.10
+ ,0.64
+ ,4.61
+ ,11.03
+ ,14.09
+ ,5.59
+ ,1.00
+ ,1.00
+ ,1.00
+ ,8.20
+ ,0.88
+ ,NA
+ ,-2.10
+ ,8.01
+ ,3.40
+ ,2.00
+ ,1.00
+ ,1.00
+ ,8.40
+ ,1.03
+ ,NA
+ ,7.21
+ ,9.00
+ ,3.81
+ ,3.00
+ ,1.00
+ ,3.00
+ ,11.90
+ ,0.26
+ ,1.16
+ ,-3.77
+ ,-0.92
+ ,2.94
+ ,4.00
+ ,1.00
+ ,3.00
+ ,10.80
+ ,0.69
+ ,0.69
+ ,-3.04
+ ,-1.11
+ ,3.40
+ ,4.00
+ ,1.00
+ ,3.00
+ ,13.80
+ ,1.72
+ ,1.61
+ ,7.44
+ ,8.75
+ ,2.48
+ ,2.00
+ ,1.00
+ ,1.00
+ ,14.30
+ ,1.13
+ ,1.87
+ ,8.16
+ ,9.29
+ ,4.79
+ ,2.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,0.00
+ ,3.16
+ ,12.43
+ ,13.10
+ ,6.09
+ ,5.00
+ ,5.00
+ ,5.00
+ ,15.20
+ ,0.59
+ ,2.48
+ ,-0.73
+ ,9.65
+ ,4.94
+ ,2.00
+ ,2.00
+ ,2.00
+ ,10.00
+ ,-0.11
+ ,3.01
+ ,9.21
+ ,11.65
+ ,5.14
+ ,4.00
+ ,4.00
+ ,4.00
+ ,11.90
+ ,0.59
+ ,2.56
+ ,7.39
+ ,9.34
+ ,2.83
+ ,2.00
+ ,1.00
+ ,2.00
+ ,6.50
+ ,0.64
+ ,3.30
+ ,12.17
+ ,12.10
+ ,4.74
+ ,4.00
+ ,4.00
+ ,4.00
+ ,7.50
+ ,-0.11
+ ,2.89
+ ,7.82
+ ,9.40
+ ,3.43
+ ,5.00
+ ,5.00
+ ,5.00
+ ,NA
+ ,NA
+ ,2.62
+ ,8.36
+ ,10.58
+ ,4.14
+ ,2.00
+ ,2.00
+ ,2.00
+ ,10.60
+ ,0.96
+ ,1.55
+ ,-1.27
+ ,7.55
+ ,3.04
+ ,3.00
+ ,1.00
+ ,3.00
+ ,7.40
+ ,0.88
+ ,2.28
+ ,8.35
+ ,10.83
+ ,3.95
+ ,1.00
+ ,1.00
+ ,1.00
+ ,8.40
+ ,0.18
+ ,3.37
+ ,8.82
+ ,12.10
+ ,5.10
+ ,2.00
+ ,3.00
+ ,2.00
+ ,5.70
+ ,-0.11
+ ,1.95
+ ,-0.29
+ ,9.42
+ ,5.42
+ ,2.00
+ ,2.00
+ ,2.00
+ ,4.90
+ ,-0.69
+ ,1.79
+ ,8.19
+ ,9.95
+ ,5.42
+ ,3.00
+ ,2.00
+ ,3.00
+ ,NA
+ ,NA
+ ,2.83
+ ,9.60
+ ,11.49
+ ,5.01
+ ,5.00
+ ,5.00
+ ,5.00
+ ,3.20
+ ,-0.51
+ ,3.00
+ ,10.92
+ ,12.07
+ ,5.02
+ ,5.00
+ ,5.00
+ ,5.00
+ ,NA
+ ,NA
+ ,2.54
+ ,7.24
+ ,9.43
+ ,4.50
+ ,2.00
+ ,2.00
+ ,2.00
+ ,8.10
+ ,0.79
+ ,1.25
+ ,-2.81
+ ,6.91
+ ,NA
+ ,3.00
+ ,1.00
+ ,2.00
+ ,11.00
+ ,0.83
+ ,1.50
+ ,-0.11
+ ,7.86
+ ,4.09
+ ,2.00
+ ,1.00
+ ,2.00
+ ,4.90
+ ,-0.69
+ ,2.01
+ ,7.60
+ ,9.42
+ ,5.30
+ ,3.00
+ ,1.00
+ ,3.00
+ ,13.20
+ ,0.96
+ ,0.83
+ ,-2.26
+ ,7.82
+ ,3.83
+ ,3.00
+ ,2.00
+ ,2.00
+ ,9.70
+ ,-0.51
+ ,3.18
+ ,8.34
+ ,10.97
+ ,5.35
+ ,4.00
+ ,3.00
+ ,4.00
+ ,12.80
+ ,1.89
+ ,1.10
+ ,8.16
+ ,8.27
+ ,2.64
+ ,2.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,NA
+ ,2.56
+ ,8.31
+ ,9.74
+ ,3.64
+ ,3.00
+ ,1.00
+ ,1.00)
+ ,dim=c(9
+ ,62)
+ ,dimnames=list(c('SWS'
+ ,'PSln'
+ ,'Lln'
+ ,'wbln'
+ ,'wbrln'
+ ,'tgln'
+ ,'P'
+ ,'S'
+ ,'D
')
+ ,1:62))
>  y <- array(NA,dim=c(9,62),dimnames=list(c('SWS','PSln','Lln','wbln','wbrln','tgln','P','S','D
'),1:62))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par1 = 'pearson'
> main = 'Correlation Matrix'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Dr. Ian E. Holliday
> #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: 
> #Technical description: 
> panel.tau <- function(x, y, digits=2, prefix='', cex.cor)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(0, 1, 0, 1))
+ rr <- cor.test(x, y, method=par1)
+ r <- round(rr$p.value,2)
+ txt <- format(c(r, 0.123456789), digits=digits)[1]
+ txt <- paste(prefix, txt, sep='')
+ if(missing(cex.cor)) cex <- 0.5/strwidth(txt)
+ text(0.5, 0.5, txt, cex = cex)
+ }
> panel.hist <- function(x, ...)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(usr[1:2], 0, 1.5) )
+ h <- hist(x, plot = FALSE)
+ breaks <- h$breaks; nB <- length(breaks)
+ y <- h$counts; y <- y/max(y)
+ rect(breaks[-nB], 0, breaks[-1], y, col='grey', ...)
+ }
> postscript(file="/var/www/html/rcomp/tmp/1v4eh1292889955.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y),diag.panel=panel.hist, upper.panel=panel.smooth, lower.panel=panel.tau, main=main)
Warning messages:
1: In strwidth(labels, "user") : font width unknown for character 0xd
2: In text.default(x, y, txt, cex = cex, font = font) :
  font width unknown for character 0xd
3: In text.default(x, y, txt, cex = cex, font = font) :
  font metrics unknown for character 0xd
> dev.off()
null device 
          1 
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> n <- length(y[,1])
> n
[1] 9
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,paste('Correlations for all pairs of data series (method=',par1,')',sep=''),n+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,' ',header=TRUE)
> for (i in 1:n) {
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ }
> a<-table.row.end(a)
> for (i in 1:n) {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ for (j in 1:n) {
+ r <- cor.test(y[i,],y[j,],method=par1)
+ a<-table.element(a,round(r$estimate,3))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/2hncm1292889955.tab") 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Correlations for all pairs of data series with p-values',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'pair',1,TRUE)
> a<-table.element(a,'Pearson r',1,TRUE)
> a<-table.element(a,'Spearman rho',1,TRUE)
> a<-table.element(a,'Kendall tau',1,TRUE)
> a<-table.row.end(a)
> cor.test(y[1,],y[2,],method=par1)

	Pearson's product-moment correlation

data:  y[1, ] and y[2, ] 
t = 4.6383, df = 45, p-value = 3.035e-05
alternative hypothesis: true correlation is not equal to 0 
95 percent confidence interval:
 0.3365188 0.7357331 
sample estimates:
      cor 
0.5687256 

> for (i in 1:(n-1))
+ {
+ for (j in (i+1):n)
+ {
+ a<-table.row.start(a)
+ dum <- paste(dimnames(t(x))[[2]][i],';',dimnames(t(x))[[2]][j],sep='')
+ a<-table.element(a,dum,header=TRUE)
+ rp <- cor.test(y[i,],y[j,],method='pearson')
+ a<-table.element(a,round(rp$estimate,4))
+ rs <- cor.test(y[i,],y[j,],method='spearman')
+ a<-table.element(a,round(rs$estimate,4))
+ rk <- cor.test(y[i,],y[j,],method='kendall')
+ a<-table.element(a,round(rk$estimate,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'p-value',header=T)
+ a<-table.element(a,paste('(',round(rp$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rs$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rk$p.value,4),')',sep=''))
+ a<-table.row.end(a)
+ }
+ }
There were 50 or more warnings (use warnings() to see the first 50)
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3dxbd1292889955.tab") 
> 
> try(system("convert tmp/1v4eh1292889955.ps tmp/1v4eh1292889955.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.019   0.361   2.101