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Type 'q()' to quit R. > x <- array(list(1280 + ,1024 + ,1024 + ,768 + ,1120 + ,700 + ,1024 + ,768 + ,1280 + ,800 + ,1280 + ,1024 + ,1280 + ,800 + ,1024 + ,768 + ,1280 + ,800 + ,1280 + ,1024 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,1024 + ,1688 + ,949 + ,1440 + ,900 + ,1600 + ,1200 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,768 + ,1176 + ,735 + ,1280 + ,800 + ,1503 + ,845 + ,1440 + ,900 + ,1366 + ,768 + ,1280 + ,768 + ,1024 + ,768 + ,1280 + ,800 + ,2560 + ,1440 + ,1280 + ,768 + ,1024 + ,768 + ,1280 + ,1024 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1440 + ,900 + ,1024 + ,768 + ,1440 + ,900 + ,1143 + ,857 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1366 + ,768 + ,1024 + ,768 + ,1408 + ,880 + ,1366 + ,768 + ,1176 + ,735 + ,1920 + ,1200 + ,1257 + ,785 + ,1280 + ,800 + ,1280 + ,800 + ,1440 + ,900 + ,1680 + ,1050 + ,1440 + ,900 + ,1024 + ,768 + ,1140 + ,641 + ,1280 + ,1024 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1152 + ,864 + ,1280 + ,1024 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1280 + ,1024 + ,1440 + ,900 + ,1280 + ,800 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1280 + ,1024 + ,1600 + ,900 + ,1024 + ,768 + ,1366 + ,768 + ,1280 + ,800 + ,1280 + ,800 + ,1440 + ,900 + ,1366 + ,768 + ,1280 + ,800 + ,1024 + ,768 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1280 + ,800 + ,1408 + ,880 + ,1280 + ,800 + ,1600 + ,900 + ,1600 + ,900 + ,1680 + ,1050 + ,1440 + ,900 + ,1440 + ,900 + ,917 + ,550 + ,1280 + ,800 + ,1760 + ,990 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,800 + ,1024 + ,768 + ,1366 + ,768 + ,1440 + ,900 + ,1280 + ,800 + ,1280 + ,1024 + ,1920 + ,1080 + ,1024 + ,768 + ,1024 + ,768 + ,1600 + ,900 + ,1117 + ,698 + ,1440 + ,900 + ,983 + ,737 + ,1024 + ,768 + ,1024 + ,640 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,800 + ,1440 + ,900 + ,1280 + ,800 + ,1024 + ,768 + ,1024 + ,768 + ,1152 + ,864 + ,1280 + ,768 + ,1024 + ,768 + ,1366 + ,768 + ,1680 + ,1050 + ,1680 + ,1050 + ,1280 + ,800 + ,1366 + ,768 + ,1024 + ,768 + ,1440 + ,900 + ,1024 + ,768 + ,1280 + ,800 + ,1280 + ,800 + ,1280 + ,800 + ,1024 + ,768 + ,1280 + ,800) + ,dim=c(2 + ,139) + ,dimnames=list(c('br' + ,'gr') + ,1:139)) > y <- array(NA,dim=c(2,139),dimnames=list(c('br','gr'),1:139)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'no' > par3 = '2' > par2 = 'quantiles' > par1 = '1' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Dr. Ian E. Holliday > #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: > #Technical description: > library(party) Loading required package: survival Loading required package: splines Loading required package: grid Loading required package: modeltools Loading required package: stats4 Loading required package: coin Loading required package: mvtnorm Loading required package: zoo Loading required package: sandwich Loading required package: strucchange Loading required package: vcd Loading required package: MASS Loading required package: colorspace > library(Hmisc) Attaching package: 'Hmisc' The following object(s) are masked from 'package:survival': untangle.specials The following object(s) are masked from 'package:base': format.pval, round.POSIXt, trunc.POSIXt, units > par1 <- as.numeric(par1) > par3 <- as.numeric(par3) > x <- data.frame(t(y)) > is.data.frame(x) [1] TRUE > x <- x[!is.na(x[,par1]),] > k <- length(x[1,]) > n <- length(x[,1]) > colnames(x)[par1] [1] "br" > x[,par1] [1] 1280 1024 1120 1024 1280 1280 1280 1024 1280 1280 1280 1280 1280 1688 1440 [16] 1600 1280 1280 1280 1176 1280 1503 1440 1366 1280 1024 1280 2560 1280 1024 [31] 1280 1280 1440 1280 1440 1024 1440 1143 1280 1440 1280 1366 1024 1408 1366 [46] 1176 1920 1257 1280 1280 1440 1680 1440 1024 1140 1280 1280 1280 1280 1280 [61] 1440 1280 1152 1280 1280 1440 1280 1280 1440 1280 1280 1440 1280 1280 1600 [76] 1024 1366 1280 1280 1440 1366 1280 1024 1280 1440 1280 1280 1408 1280 1600 [91] 1600 1680 1440 1440 917 1280 1760 1280 1280 1280 1024 1366 1440 1280 1280 [106] 1920 1024 1024 1600 1117 1440 983 1024 1024 1280 1440 1280 1280 1280 1440 [121] 1280 1024 1024 1152 1280 1024 1366 1680 1680 1280 1366 1024 1440 1024 1280 [136] 1280 1280 1024 1280 > if (par2 == 'kmeans') { + cl <- kmeans(x[,par1], par3) + print(cl) + clm <- matrix(cbind(cl$centers,1:par3),ncol=2) + clm <- clm[sort.list(clm[,1]),] + for (i in 1:par3) { + cl$cluster[cl$cluster==clm[i,2]] <- paste('C',i,sep='') + } + cl$cluster <- as.factor(cl$cluster) + print(cl$cluster) + x[,par1] <- cl$cluster + } > if (par2 == 'quantiles') { + x[,par1] <- cut2(x[,par1],g=par3) + } > if (par2 == 'hclust') { + hc <- hclust(dist(x[,par1])^2, 'cen') + print(hc) + memb <- cutree(hc, k = par3) + dum <- c(mean(x[memb==1,par1])) + for (i in 2:par3) { + dum <- c(dum, mean(x[memb==i,par1])) + } + hcm <- matrix(cbind(dum,1:par3),ncol=2) + hcm <- hcm[sort.list(hcm[,1]),] + for (i in 1:par3) { + memb[memb==hcm[i,2]] <- paste('C',i,sep='') + } + memb <- as.factor(memb) + print(memb) + x[,par1] <- memb + } > if (par2=='equal') { + ed <- cut(as.numeric(x[,par1]),par3,labels=paste('C',1:par3,sep='')) + x[,par1] <- as.factor(ed) + } > table(x[,par1]) [ 917,1366) [1366,2560] 93 46 > colnames(x) [1] "br" "gr" > colnames(x)[par1] [1] "br" > x[,par1] [1] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [7] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [13] [ 917,1366) [1366,2560] [1366,2560] [1366,2560] [ 917,1366) [ 917,1366) [19] [ 917,1366) [ 917,1366) [ 917,1366) [1366,2560] [1366,2560] [1366,2560] [25] [ 917,1366) [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [ 917,1366) [31] [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [1366,2560] [ 917,1366) [37] [1366,2560] [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [1366,2560] [43] [ 917,1366) [1366,2560] [1366,2560] [ 917,1366) [1366,2560] [ 917,1366) [49] [ 917,1366) [ 917,1366) [1366,2560] [1366,2560] [1366,2560] [ 917,1366) [55] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [61] [1366,2560] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [1366,2560] [67] [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [ 917,1366) [1366,2560] [73] [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [1366,2560] [ 917,1366) [79] [ 917,1366) [1366,2560] [1366,2560] [ 917,1366) [ 917,1366) [ 917,1366) [85] [1366,2560] [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [1366,2560] [91] [1366,2560] [1366,2560] [1366,2560] [1366,2560] [ 917,1366) [ 917,1366) [97] [1366,2560] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [1366,2560] [103] [1366,2560] [ 917,1366) [ 917,1366) [1366,2560] [ 917,1366) [ 917,1366) [109] [1366,2560] [ 917,1366) [1366,2560] [ 917,1366) [ 917,1366) [ 917,1366) [115] [ 917,1366) [1366,2560] [ 917,1366) [ 917,1366) [ 917,1366) [1366,2560] [121] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [127] [1366,2560] [1366,2560] [1366,2560] [ 917,1366) [1366,2560] [ 917,1366) [133] [1366,2560] [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [ 917,1366) [139] [ 917,1366) Levels: [ 917,1366) [1366,2560] > if (par2 == 'none') { + m <- ctree(as.formula(paste(colnames(x)[par1],' ~ .',sep='')),data = x) + } > > #Note: the /var/www/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/rcomp/createtable") > > if (par2 != 'none') { + m <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data = x) + if (par4=='yes') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'10-Fold Cross Validation',3+2*par3,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'',1,TRUE) + a<-table.element(a,'Prediction (training)',par3+1,TRUE) + a<-table.element(a,'Prediction (testing)',par3+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Actual',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) + a<-table.element(a,'CV',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) + a<-table.element(a,'CV',1,TRUE) + a<-table.row.end(a) + for (i in 1:10) { + ind <- sample(2, nrow(x), replace=T, prob=c(0.9,0.1)) + m.ct <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data =x[ind==1,]) + if (i==1) { + m.ct.i.pred <- predict(m.ct, newdata=x[ind==1,]) + m.ct.i.actu <- x[ind==1,par1] + m.ct.x.pred <- predict(m.ct, newdata=x[ind==2,]) + m.ct.x.actu <- x[ind==2,par1] + } else { + m.ct.i.pred <- c(m.ct.i.pred,predict(m.ct, newdata=x[ind==1,])) + m.ct.i.actu <- c(m.ct.i.actu,x[ind==1,par1]) + m.ct.x.pred <- c(m.ct.x.pred,predict(m.ct, newdata=x[ind==2,])) + m.ct.x.actu <- c(m.ct.x.actu,x[ind==2,par1]) + } + } + print(m.ct.i.tab <- table(m.ct.i.actu,m.ct.i.pred)) + numer <- 0 + for (i in 1:par3) { + print(m.ct.i.tab[i,i] / sum(m.ct.i.tab[i,])) + numer <- numer + m.ct.i.tab[i,i] + } + print(m.ct.i.cp <- numer / sum(m.ct.i.tab)) + print(m.ct.x.tab <- table(m.ct.x.actu,m.ct.x.pred)) + numer <- 0 + for (i in 1:par3) { + print(m.ct.x.tab[i,i] / sum(m.ct.x.tab[i,])) + numer <- numer + m.ct.x.tab[i,i] + } + print(m.ct.x.cp <- numer / sum(m.ct.x.tab)) + for (i in 1:par3) { + a<-table.row.start(a) + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + for (jjj in 1:par3) a<-table.element(a,m.ct.i.tab[i,jjj]) + a<-table.element(a,round(m.ct.i.tab[i,i]/sum(m.ct.i.tab[i,]),4)) + for (jjj in 1:par3) a<-table.element(a,m.ct.x.tab[i,jjj]) + a<-table.element(a,round(m.ct.x.tab[i,i]/sum(m.ct.x.tab[i,]),4)) + a<-table.row.end(a) + } + a<-table.row.start(a) + a<-table.element(a,'Overall',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,'-') + a<-table.element(a,round(m.ct.i.cp,4)) + for (jjj in 1:par3) a<-table.element(a,'-') + a<-table.element(a,round(m.ct.x.cp,4)) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/1no0t1292929301.tab") + } + } > m Conditional inference tree with 2 terminal nodes Response: as.factor(br) Input: gr Number of observations: 139 1) gr <= 864; criterion = 1, statistic = 29.866 2)* weights = 92 1) gr > 864 3)* weights = 47 > postscript(file="/var/www/rcomp/tmp/2gfhe1292929301.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(m) > dev.off() null device 1 > postscript(file="/var/www/rcomp/tmp/3gfhe1292929301.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(x[,par1] ~ as.factor(where(m)),main='Response by Terminal Node',xlab='Terminal Node',ylab='Response') > dev.off() null device 1 > if (par2 == 'none') { + forec <- predict(m) + result <- as.data.frame(cbind(x[,par1],forec,x[,par1]-forec)) + colnames(result) <- c('Actuals','Forecasts','Residuals') + print(result) + } > if (par2 != 'none') { + print(cbind(as.factor(x[,par1]),predict(m))) + myt <- table(as.factor(x[,par1]),predict(m)) + print(myt) + } [,1] [,2] [1,] 1 2 [2,] 1 1 [3,] 1 1 [4,] 1 1 [5,] 1 1 [6,] 1 2 [7,] 1 1 [8,] 1 1 [9,] 1 1 [10,] 1 2 [11,] 1 1 [12,] 1 1 [13,] 1 2 [14,] 2 2 [15,] 2 2 [16,] 2 2 [17,] 1 1 [18,] 1 1 [19,] 1 1 [20,] 1 1 [21,] 1 1 [22,] 2 1 [23,] 2 2 [24,] 2 1 [25,] 1 1 [26,] 1 1 [27,] 1 1 [28,] 2 2 [29,] 1 1 [30,] 1 1 [31,] 1 2 [32,] 1 1 [33,] 2 2 [34,] 1 1 [35,] 2 2 [36,] 1 1 [37,] 2 2 [38,] 1 1 [39,] 1 1 [40,] 2 2 [41,] 1 1 [42,] 2 1 [43,] 1 1 [44,] 2 2 [45,] 2 1 [46,] 1 1 [47,] 2 2 [48,] 1 1 [49,] 1 1 [50,] 1 1 [51,] 2 2 [52,] 2 2 [53,] 2 2 [54,] 1 1 [55,] 1 1 [56,] 1 2 [57,] 1 1 [58,] 1 1 [59,] 1 1 [60,] 1 1 [61,] 2 2 [62,] 1 1 [63,] 1 1 [64,] 1 2 [65,] 1 1 [66,] 2 2 [67,] 1 1 [68,] 1 2 [69,] 2 2 [70,] 1 1 [71,] 1 1 [72,] 2 2 [73,] 1 1 [74,] 1 2 [75,] 2 2 [76,] 1 1 [77,] 2 1 [78,] 1 1 [79,] 1 1 [80,] 2 2 [81,] 2 1 [82,] 1 1 [83,] 1 1 [84,] 1 1 [85,] 2 2 [86,] 1 1 [87,] 1 1 [88,] 2 2 [89,] 1 1 [90,] 2 2 [91,] 2 2 [92,] 2 2 [93,] 2 2 [94,] 2 2 [95,] 1 1 [96,] 1 1 [97,] 2 2 [98,] 1 1 [99,] 1 1 [100,] 1 1 [101,] 1 1 [102,] 2 1 [103,] 2 2 [104,] 1 1 [105,] 1 2 [106,] 2 2 [107,] 1 1 [108,] 1 1 [109,] 2 2 [110,] 1 1 [111,] 2 2 [112,] 1 1 [113,] 1 1 [114,] 1 1 [115,] 1 1 [116,] 2 2 [117,] 1 1 [118,] 1 1 [119,] 1 1 [120,] 2 2 [121,] 1 1 [122,] 1 1 [123,] 1 1 [124,] 1 1 [125,] 1 1 [126,] 1 1 [127,] 2 1 [128,] 2 2 [129,] 2 2 [130,] 1 1 [131,] 2 1 [132,] 1 1 [133,] 2 2 [134,] 1 1 [135,] 1 1 [136,] 1 1 [137,] 1 1 [138,] 1 1 [139,] 1 1 [ 917,1366) [1366,2560] [ 917,1366) 83 10 [1366,2560] 9 37 > postscript(file="/var/www/rcomp/tmp/486zh1292929301.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if(par2=='none') { + op <- par(mfrow=c(2,2)) + plot(density(result$Actuals),main='Kernel Density Plot of Actuals') + plot(density(result$Residuals),main='Kernel Density Plot of Residuals') + plot(result$Forecasts,result$Actuals,main='Actuals versus Predictions',xlab='Predictions',ylab='Actuals') + plot(density(result$Forecasts),main='Kernel Density Plot of Predictions') + par(op) + } > if(par2!='none') { + plot(myt,main='Confusion Matrix',xlab='Actual',ylab='Predicted') + } > dev.off() null device 1 > if (par2 == 'none') { + detcoef <- cor(result$Forecasts,result$Actuals) + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Goodness of Fit',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Correlation',1,TRUE) + a<-table.element(a,round(detcoef,4)) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'R-squared',1,TRUE) + a<-table.element(a,round(detcoef*detcoef,4)) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'RMSE',1,TRUE) + a<-table.element(a,round(sqrt(mean((result$Residuals)^2)),4)) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/55yfq1292929301.tab") + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Actuals, Predictions, and Residuals',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'#',header=TRUE) + a<-table.element(a,'Actuals',header=TRUE) + a<-table.element(a,'Forecasts',header=TRUE) + a<-table.element(a,'Residuals',header=TRUE) + a<-table.row.end(a) + for (i in 1:length(result$Actuals)) { + a<-table.row.start(a) + a<-table.element(a,i,header=TRUE) + a<-table.element(a,result$Actuals[i]) + a<-table.element(a,result$Forecasts[i]) + a<-table.element(a,result$Residuals[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/6fpet1292929301.tab") + } > if (par2 != 'none') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Confusion Matrix (predicted in columns / actuals in rows)',par3+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'',1,TRUE) + for (i in 1:par3) { + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + } + a<-table.row.end(a) + for (i in 1:par3) { + a<-table.row.start(a) + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + for (j in 1:par3) { + a<-table.element(a,myt[i,j]) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/7qhve1292929301.tab") + } > > try(system("convert tmp/2gfhe1292929301.ps tmp/2gfhe1292929301.png",intern=TRUE)) character(0) > try(system("convert tmp/3gfhe1292929301.ps tmp/3gfhe1292929301.png",intern=TRUE)) character(0) > try(system("convert tmp/486zh1292929301.ps tmp/486zh1292929301.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.940 0.270 2.206