R version 2.9.0 (2009-04-17)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(NA
+ ,NA
+ ,38.60
+ ,6654.00
+ ,5712.00
+ ,645.00
+ ,3.00
+ ,5.00
+ ,3.00
+ ,6.30
+ ,2.00
+ ,4.50
+ ,1.00
+ ,6600.00
+ ,42.00
+ ,3.00
+ ,1.00
+ ,3.00
+ ,NA
+ ,NA
+ ,14.00
+ ,3.39
+ ,44.50
+ ,60.00
+ ,1.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,NA
+ ,NA
+ ,0.92
+ ,5.70
+ ,25.00
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+ ,2.00
+ ,3.00
+ ,2.10
+ ,1.80
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+ ,2547.00
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+ ,624.00
+ ,3.00
+ ,5.00
+ ,4.00
+ ,9.10
+ ,0.70
+ ,27.00
+ ,10.55
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+ ,180.00
+ ,4.00
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+ ,2.00
+ ,2.00
+ ,2.00
+ ,4.80
+ ,1.30
+ ,34.00
+ ,1.41
+ ,17.50
+ ,NA
+ ,1.00
+ ,2.00
+ ,1.00
+ ,12.00
+ ,6.10
+ ,7.00
+ ,60.00
+ ,81.00
+ ,NA
+ ,1.00
+ ,1.00
+ ,1.00
+ ,NA
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+ ,529.00
+ ,680.00
+ ,400.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,3.30
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+ ,5.00
+ ,11.00
+ ,3.40
+ ,3.90
+ ,0.12
+ ,1.00
+ ,16.00
+ ,3.00
+ ,1.00
+ ,2.00
+ ,NA
+ ,NA
+ ,39.30
+ ,207.00
+ ,406.00
+ ,252.00
+ ,1.00
+ ,4.00
+ ,1.00
+ ,4.70
+ ,1.50
+ ,41.00
+ ,85.00
+ ,325.00
+ ,310.00
+ ,1.00
+ ,3.00
+ ,1.00
+ ,NA
+ ,NA
+ ,16.20
+ ,36.33
+ ,119.50
+ ,63.00
+ ,1.00
+ ,1.00
+ ,1.00
+ ,10.40
+ ,3.40
+ ,9.00
+ ,0.10
+ ,4.00
+ ,28.00
+ ,5.00
+ ,1.00
+ ,3.00
+ ,7.40
+ ,0.80
+ ,7.60
+ ,1.04
+ ,5.50
+ ,68.00
+ ,5.00
+ ,3.00
+ ,4.00
+ ,2.10
+ ,0.80
+ ,46.00
+ ,521.00
+ ,655.00
+ ,336.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,NA
+ ,NA
+ ,22.40
+ ,100.00
+ ,157.00
+ ,100.00
+ ,1.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,NA
+ ,16.30
+ ,35.00
+ ,56.00
+ ,33.00
+ ,3.00
+ ,5.00
+ ,4.00
+ ,7.70
+ ,1.40
+ ,2.60
+ ,0.01
+ ,0.14
+ ,21.50
+ ,5.00
+ ,2.00
+ ,4.00
+ ,17.90
+ ,2.00
+ ,24.00
+ ,0.01
+ ,0.25
+ ,50.00
+ ,1.00
+ ,1.00
+ ,1.00
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+ ,NA
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+ ,2.00
+ ,1.00
+ ,1.00
+ ,8.40
+ ,2.80
+ ,NA
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+ ,3.00
+ ,11.90
+ ,1.30
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+ ,3.10
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+ ,1.00
+ ,1.00
+ ,NA
+ ,1.00
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+ ,440.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,15.20
+ ,1.80
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+ ,11.90
+ ,1.80
+ ,13.00
+ ,1.62
+ ,11.40
+ ,17.00
+ ,2.00
+ ,1.00
+ ,2.00
+ ,6.50
+ ,1.90
+ ,27.00
+ ,192.00
+ ,180.00
+ ,115.00
+ ,4.00
+ ,4.00
+ ,4.00
+ ,7.50
+ ,0.90
+ ,18.00
+ ,2.50
+ ,12.10
+ ,31.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,NA
+ ,NA
+ ,13.70
+ ,4.29
+ ,39.20
+ ,63.00
+ ,2.00
+ ,2.00
+ ,2.00
+ ,10.60
+ ,2.60
+ ,4.70
+ ,0.28
+ ,1.90
+ ,21.00
+ ,3.00
+ ,1.00
+ ,3.00
+ ,7.40
+ ,2.40
+ ,9.80
+ ,4.24
+ ,50.40
+ ,52.00
+ ,1.00
+ ,1.00
+ ,1.00
+ ,8.40
+ ,1.20
+ ,29.00
+ ,6.80
+ ,179.00
+ ,164.00
+ ,2.00
+ ,3.00
+ ,2.00
+ ,5.70
+ ,0.90
+ ,7.00
+ ,0.75
+ ,12.30
+ ,225.00
+ ,2.00
+ ,2.00
+ ,2.00
+ ,4.90
+ ,0.50
+ ,6.00
+ ,3.60
+ ,21.00
+ ,225.00
+ ,3.00
+ ,2.00
+ ,3.00
+ ,NA
+ ,NA
+ ,17.00
+ ,14.83
+ ,98.20
+ ,150.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,3.20
+ ,0.60
+ ,20.00
+ ,55.50
+ ,175.00
+ ,151.00
+ ,5.00
+ ,5.00
+ ,5.00
+ ,NA
+ ,NA
+ ,12.70
+ ,1.40
+ ,12.50
+ ,90.00
+ ,2.00
+ ,2.00
+ ,2.00
+ ,8.10
+ ,2.20
+ ,3.50
+ ,0.06
+ ,1.00
+ ,NA
+ ,3.00
+ ,1.00
+ ,2.00
+ ,11.00
+ ,2.30
+ ,4.50
+ ,0.90
+ ,2.60
+ ,60.00
+ ,2.00
+ ,1.00
+ ,2.00
+ ,4.90
+ ,0.50
+ ,7.50
+ ,2.00
+ ,12.30
+ ,200.00
+ ,3.00
+ ,1.00
+ ,3.00
+ ,13.20
+ ,2.60
+ ,2.30
+ ,0.10
+ ,2.50
+ ,46.00
+ ,3.00
+ ,2.00
+ ,2.00
+ ,9.70
+ ,0.60
+ ,24.00
+ ,4.19
+ ,58.00
+ ,210.00
+ ,4.00
+ ,3.00
+ ,4.00
+ ,12.80
+ ,6.60
+ ,3.00
+ ,3.50
+ ,3.90
+ ,14.00
+ ,2.00
+ ,1.00
+ ,1.00
+ ,NA
+ ,NA
+ ,13.00
+ ,4.05
+ ,17.00
+ ,38.00
+ ,3.00
+ ,1.00
+ ,1.00)
+ ,dim=c(9
+ ,62)
+ ,dimnames=list(c('SWS'
+ ,'PS'
+ ,'L'
+ ,'Wb'
+ ,'Wbr'
+ ,'Tg'
+ ,'P'
+ ,'S'
+ ,'D')
+ ,1:62))
>  y <- array(NA,dim=c(9,62),dimnames=list(c('SWS','PS','L','Wb','Wbr','Tg','P','S','D'),1:62))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par1 = 'kendall'
> main = 'Correlation Matrix'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Dr. Ian E. Holliday
> #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: 
> #Technical description: 
> panel.tau <- function(x, y, digits=2, prefix='', cex.cor)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(0, 1, 0, 1))
+ rr <- cor.test(x, y, method=par1)
+ r <- round(rr$p.value,2)
+ txt <- format(c(r, 0.123456789), digits=digits)[1]
+ txt <- paste(prefix, txt, sep='')
+ if(missing(cex.cor)) cex <- 0.5/strwidth(txt)
+ text(0.5, 0.5, txt, cex = cex)
+ }
> panel.hist <- function(x, ...)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(usr[1:2], 0, 1.5) )
+ h <- hist(x, plot = FALSE)
+ breaks <- h$breaks; nB <- length(breaks)
+ y <- h$counts; y <- y/max(y)
+ rect(breaks[-nB], 0, breaks[-1], y, col='grey', ...)
+ }
> postscript(file="/var/www/html/rcomp/tmp/1pphc1293053942.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y),diag.panel=panel.hist, upper.panel=panel.smooth, lower.panel=panel.tau, main=main)
Warning messages:
1: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
2: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
3: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
4: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
5: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
6: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
7: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
8: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
9: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
10: In cor.test.default(x, y, method = par1) :
  Cannot compute exact p-value with ties
> dev.off()
null device 
          1 
> 
> #Note: the /var/www/html/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/www/html/rcomp/createtable")
> 
> n <- length(y[,1])
> n
[1] 9
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,paste('Correlations for all pairs of data series (method=',par1,')',sep=''),n+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,' ',header=TRUE)
> for (i in 1:n) {
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ }
> a<-table.row.end(a)
> for (i in 1:n) {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ for (j in 1:n) {
+ r <- cor.test(y[i,],y[j,],method=par1)
+ a<-table.element(a,round(r$estimate,3))
+ }
+ a<-table.row.end(a)
+ }
There were 21 warnings (use warnings() to see them)
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/2bqgi1293053942.tab") 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Correlations for all pairs of data series with p-values',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'pair',1,TRUE)
> a<-table.element(a,'Pearson r',1,TRUE)
> a<-table.element(a,'Spearman rho',1,TRUE)
> a<-table.element(a,'Kendall tau',1,TRUE)
> a<-table.row.end(a)
> cor.test(y[1,],y[2,],method=par1)

	Kendall's rank correlation tau

data:  y[1, ] and y[2, ] 
z = 3.7917, p-value = 0.0001496
alternative hypothesis: true tau is not equal to 0 
sample estimates:
      tau 
0.3832724 

Warning message:
In cor.test.default(y[1, ], y[2, ], method = par1) :
  Cannot compute exact p-value with ties
> for (i in 1:(n-1))
+ {
+ for (j in (i+1):n)
+ {
+ a<-table.row.start(a)
+ dum <- paste(dimnames(t(x))[[2]][i],';',dimnames(t(x))[[2]][j],sep='')
+ a<-table.element(a,dum,header=TRUE)
+ rp <- cor.test(y[i,],y[j,],method='pearson')
+ a<-table.element(a,round(rp$estimate,4))
+ rs <- cor.test(y[i,],y[j,],method='spearman')
+ a<-table.element(a,round(rs$estimate,4))
+ rk <- cor.test(y[i,],y[j,],method='kendall')
+ a<-table.element(a,round(rk$estimate,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'p-value',header=T)
+ a<-table.element(a,paste('(',round(rp$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rs$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rk$p.value,4),')',sep=''))
+ a<-table.row.end(a)
+ }
+ }
There were 46 warnings (use warnings() to see them)
> a<-table.end(a)
> table.save(a,file="/var/www/html/rcomp/tmp/3wrwo1293053942.tab") 
> 
> try(system("convert tmp/1pphc1293053942.ps tmp/1pphc1293053942.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.199   0.373  12.245