R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(56
+ ,79
+ ,30
+ ,112285
+ ,21
+ ,56
+ ,58
+ ,28
+ ,84786
+ ,23
+ ,54
+ ,60
+ ,38
+ ,83123
+ ,22
+ ,92
+ ,121
+ ,25
+ ,119182
+ ,22
+ ,44
+ ,43
+ ,26
+ ,116174
+ ,21
+ ,33
+ ,69
+ ,25
+ ,57635
+ ,22
+ ,84
+ ,78
+ ,38
+ ,66198
+ ,21
+ ,55
+ ,44
+ ,30
+ ,57793
+ ,21
+ ,154
+ ,158
+ ,47
+ ,97668
+ ,21
+ ,53
+ ,102
+ ,30
+ ,133824
+ ,21
+ ,119
+ ,77
+ ,31
+ ,101481
+ ,23
+ ,41
+ ,82
+ ,23
+ ,99645
+ ,21
+ ,58
+ ,101
+ ,36
+ ,99052
+ ,21
+ ,75
+ ,80
+ ,30
+ ,67654
+ ,22
+ ,33
+ ,50
+ ,25
+ ,65553
+ ,22
+ ,100
+ ,73
+ ,31
+ ,82753
+ ,21
+ ,112
+ ,81
+ ,31
+ ,85323
+ ,22
+ ,73
+ ,105
+ ,33
+ ,72654
+ ,23
+ ,40
+ ,47
+ ,25
+ ,30727
+ ,22
+ ,60
+ ,94
+ ,35
+ ,117478
+ ,22
+ ,62
+ ,44
+ ,42
+ ,74007
+ ,21
+ ,77
+ ,107
+ ,33
+ ,101494
+ ,21
+ ,99
+ ,84
+ ,36
+ ,79215
+ ,21
+ ,17
+ ,0
+ ,0
+ ,1423
+ ,20
+ ,30
+ ,33
+ ,14
+ ,31081
+ ,21
+ ,76
+ ,42
+ ,17
+ ,22996
+ ,25
+ ,146
+ ,96
+ ,32
+ ,83122
+ ,21
+ ,56
+ ,56
+ ,35
+ ,60578
+ ,21
+ ,107
+ ,57
+ ,20
+ ,39992
+ ,20
+ ,58
+ ,59
+ ,28
+ ,79892
+ ,24
+ ,34
+ ,39
+ ,28
+ ,49810
+ ,23
+ ,119
+ ,76
+ ,34
+ ,100708
+ ,21
+ ,66
+ ,91
+ ,39
+ ,82875
+ ,24
+ ,66
+ ,76
+ ,28
+ ,72260
+ ,21
+ ,24
+ ,8
+ ,4
+ ,5950
+ ,23
+ ,259
+ ,79
+ ,39
+ ,115762
+ ,23
+ ,41
+ ,76
+ ,29
+ ,80670
+ ,21
+ ,68
+ ,101
+ ,44
+ ,143558
+ ,22
+ ,168
+ ,94
+ ,21
+ ,117105
+ ,20
+ ,43
+ ,27
+ ,16
+ ,23789
+ ,18
+ ,105
+ ,123
+ ,35
+ ,105195
+ ,22
+ ,94
+ ,105
+ ,23
+ ,149193
+ ,21
+ ,57
+ ,41
+ ,29
+ ,95260
+ ,21
+ ,53
+ ,72
+ ,25
+ ,55183
+ ,23
+ ,103
+ ,67
+ ,27
+ ,106671
+ ,22
+ ,121
+ ,75
+ ,36
+ ,73511
+ ,21
+ ,62
+ ,114
+ ,28
+ ,92945
+ ,21
+ ,32
+ ,22
+ ,23
+ ,22618
+ ,21
+ ,45
+ ,69
+ ,28
+ ,83737
+ ,22
+ ,46
+ ,105
+ ,34
+ ,69094
+ ,21
+ ,75
+ ,88
+ ,28
+ ,95536
+ ,21
+ ,88
+ ,73
+ ,34
+ ,225920
+ ,23
+ ,53
+ ,62
+ ,33
+ ,61370
+ ,21
+ ,78
+ ,100
+ ,35
+ ,84651
+ ,22
+ ,45
+ ,24
+ ,24
+ ,15986
+ ,22
+ ,46
+ ,67
+ ,29
+ ,95364
+ ,20
+ ,41
+ ,46
+ ,20
+ ,26706
+ ,21
+ ,144
+ ,57
+ ,29
+ ,89691
+ ,21
+ ,91
+ ,135
+ ,37
+ ,126846
+ ,21
+ ,63
+ ,124
+ ,33
+ ,102860
+ ,21
+ ,53
+ ,33
+ ,25
+ ,51715
+ ,22
+ ,62
+ ,98
+ ,32
+ ,55801
+ ,21
+ ,63
+ ,58
+ ,29
+ ,111813
+ ,24
+ ,32
+ ,68
+ ,28
+ ,120293
+ ,22
+ ,62
+ ,131
+ ,31
+ ,161647
+ ,24
+ ,117
+ ,110
+ ,52
+ ,115929
+ ,21
+ ,34
+ ,37
+ ,21
+ ,24266
+ ,22
+ ,92
+ ,130
+ ,24
+ ,162901
+ ,22
+ ,93
+ ,93
+ ,41
+ ,109825
+ ,21
+ ,54
+ ,118
+ ,33
+ ,129838
+ ,24
+ ,144
+ ,39
+ ,32
+ ,37510
+ ,21
+ ,109
+ ,81
+ ,31
+ ,87771
+ ,22
+ ,75
+ ,51
+ ,18
+ ,44418
+ ,19
+ ,50
+ ,28
+ ,23
+ ,192565
+ ,22
+ ,61
+ ,40
+ ,17
+ ,35232
+ ,23
+ ,55
+ ,56
+ ,20
+ ,40909
+ ,20
+ ,77
+ ,27
+ ,12
+ ,13294
+ ,20
+ ,72
+ ,83
+ ,30
+ ,140867
+ ,23
+ ,53
+ ,28
+ ,13
+ ,44332
+ ,20
+ ,42
+ ,59
+ ,22
+ ,61056
+ ,20
+ ,71
+ ,133
+ ,42
+ ,101338
+ ,23
+ ,10
+ ,12
+ ,1
+ ,1168
+ ,25
+ ,65
+ ,106
+ ,32
+ ,65567
+ ,21
+ ,66
+ ,44
+ ,25
+ ,32334
+ ,22
+ ,41
+ ,71
+ ,36
+ ,40735
+ ,21
+ ,86
+ ,116
+ ,31
+ ,91413
+ ,22
+ ,16
+ ,4
+ ,0
+ ,855
+ ,22
+ ,42
+ ,62
+ ,24
+ ,97068
+ ,23
+ ,19
+ ,12
+ ,13
+ ,44339
+ ,21
+ ,19
+ ,18
+ ,8
+ ,14116
+ ,21
+ ,45
+ ,14
+ ,13
+ ,10288
+ ,20
+ ,65
+ ,60
+ ,19
+ ,65622
+ ,19
+ ,95
+ ,98
+ ,33
+ ,76643
+ ,22
+ ,64
+ ,32
+ ,38
+ ,92696
+ ,21
+ ,38
+ ,25
+ ,24
+ ,94785
+ ,21
+ ,65
+ ,100
+ ,43
+ ,93815
+ ,21
+ ,52
+ ,46
+ ,43
+ ,86687
+ ,21
+ ,62
+ ,45
+ ,14
+ ,34553
+ ,21
+ ,65
+ ,129
+ ,41
+ ,105547
+ ,21
+ ,95
+ ,136
+ ,45
+ ,213688
+ ,22
+ ,29
+ ,59
+ ,31
+ ,71220
+ ,22
+ ,247
+ ,63
+ ,31
+ ,91721
+ ,22
+ ,29
+ ,14
+ ,30
+ ,111194
+ ,22
+ ,118
+ ,36
+ ,16
+ ,51009
+ ,18
+ ,110
+ ,113
+ ,37
+ ,135777
+ ,21
+ ,67
+ ,47
+ ,30
+ ,51513
+ ,23
+ ,42
+ ,92
+ ,35
+ ,74163
+ ,21
+ ,64
+ ,50
+ ,20
+ ,33416
+ ,19
+ ,81
+ ,41
+ ,18
+ ,83305
+ ,19
+ ,95
+ ,91
+ ,31
+ ,98952
+ ,23
+ ,67
+ ,111
+ ,31
+ ,102372
+ ,21
+ ,63
+ ,41
+ ,21
+ ,37238
+ ,21
+ ,83
+ ,120
+ ,39
+ ,103772
+ ,21
+ ,32
+ ,25
+ ,18
+ ,21399
+ ,21
+ ,83
+ ,131
+ ,39
+ ,130115
+ ,20
+ ,31
+ ,45
+ ,14
+ ,24874
+ ,19
+ ,67
+ ,29
+ ,7
+ ,34988
+ ,21
+ ,66
+ ,58
+ ,17
+ ,45549
+ ,22
+ ,70
+ ,47
+ ,30
+ ,64466
+ ,21
+ ,103
+ ,109
+ ,37
+ ,54990
+ ,25
+ ,34
+ ,37
+ ,32
+ ,34777
+ ,23
+ ,40
+ ,15
+ ,17
+ ,27114
+ ,19
+ ,31
+ ,7
+ ,24
+ ,37636
+ ,19
+ ,42
+ ,54
+ ,22
+ ,65461
+ ,19
+ ,46
+ ,54
+ ,12
+ ,30080
+ ,19
+ ,33
+ ,14
+ ,19
+ ,24094
+ ,19
+ ,18
+ ,16
+ ,13
+ ,69008
+ ,20
+ ,35
+ ,32
+ ,15
+ ,46090
+ ,19
+ ,66
+ ,38
+ ,15
+ ,34029
+ ,19
+ ,60
+ ,22
+ ,17
+ ,46300
+ ,19
+ ,54
+ ,32
+ ,16
+ ,40662
+ ,19
+ ,53
+ ,32
+ ,18
+ ,28987
+ ,19
+ ,39
+ ,37
+ ,17
+ ,30594
+ ,20
+ ,45
+ ,32
+ ,16
+ ,27913
+ ,19
+ ,36
+ ,0
+ ,23
+ ,42744
+ ,19
+ ,28
+ ,5
+ ,22
+ ,12934
+ ,18
+ ,30
+ ,10
+ ,13
+ ,41385
+ ,19
+ ,22
+ ,27
+ ,16
+ ,18653
+ ,19
+ ,31
+ ,29
+ ,20
+ ,30976
+ ,21
+ ,55
+ ,25
+ ,22
+ ,63339
+ ,18
+ ,54
+ ,55
+ ,17
+ ,25568
+ ,18
+ ,14
+ ,5
+ ,17
+ ,4154
+ ,21
+ ,81
+ ,43
+ ,12
+ ,19474
+ ,20
+ ,43
+ ,34
+ ,17
+ ,39067
+ ,19
+ ,30
+ ,35
+ ,23
+ ,65892
+ ,21
+ ,23
+ ,0
+ ,17
+ ,4143
+ ,21
+ ,38
+ ,37
+ ,14
+ ,28579
+ ,20
+ ,53
+ ,26
+ ,21
+ ,38084
+ ,24
+ ,45
+ ,38
+ ,18
+ ,27717
+ ,22
+ ,39
+ ,23
+ ,18
+ ,32928
+ ,21
+ ,24
+ ,30
+ ,17
+ ,19499
+ ,21
+ ,35
+ ,18
+ ,15
+ ,36874
+ ,19
+ ,151
+ ,28
+ ,21
+ ,48259
+ ,18
+ ,30
+ ,21
+ ,14
+ ,28207
+ ,19
+ ,57
+ ,50
+ ,15
+ ,45833
+ ,19
+ ,40
+ ,12
+ ,15
+ ,29156
+ ,19
+ ,77
+ ,27
+ ,22
+ ,45588
+ ,20
+ ,35
+ ,41
+ ,21
+ ,45097
+ ,18
+ ,63
+ ,12
+ ,18
+ ,28394
+ ,19
+ ,44
+ ,21
+ ,17
+ ,18632
+ ,19
+ ,19
+ ,8
+ ,4
+ ,2325
+ ,20
+ ,13
+ ,26
+ ,10
+ ,25139
+ ,20
+ ,42
+ ,27
+ ,16
+ ,27975
+ ,21
+ ,42
+ ,37
+ ,18
+ ,21792
+ ,20
+ ,49
+ ,29
+ ,12
+ ,26263
+ ,21
+ ,30
+ ,32
+ ,16
+ ,23686
+ ,18
+ ,49
+ ,35
+ ,21
+ ,49303
+ ,19
+ ,12
+ ,10
+ ,2
+ ,5752
+ ,19
+ ,20
+ ,17
+ ,17
+ ,20055
+ ,19
+ ,27
+ ,10
+ ,16
+ ,20154
+ ,19
+ ,14
+ ,17
+ ,16
+ ,19540
+ ,19)
+ ,dim=c(5
+ ,171)
+ ,dimnames=list(c('log'
+ ,'blog'
+ ,'PR'
+ ,'size'
+ ,'age
')
+ ,1:171))
>  y <- array(NA,dim=c(5,171),dimnames=list(c('log','blog','PR','size','age
'),1:171))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par1 = 'pearson'
> main = 'Correlation Matrix'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Dr. Ian E. Holliday
> #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: 
> #Technical description: 
> panel.tau <- function(x, y, digits=2, prefix='', cex.cor)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(0, 1, 0, 1))
+ rr <- cor.test(x, y, method=par1)
+ r <- round(rr$p.value,2)
+ txt <- format(c(r, 0.123456789), digits=digits)[1]
+ txt <- paste(prefix, txt, sep='')
+ if(missing(cex.cor)) cex <- 0.5/strwidth(txt)
+ text(0.5, 0.5, txt, cex = cex)
+ }
> panel.hist <- function(x, ...)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(usr[1:2], 0, 1.5) )
+ h <- hist(x, plot = FALSE)
+ breaks <- h$breaks; nB <- length(breaks)
+ y <- h$counts; y <- y/max(y)
+ rect(breaks[-nB], 0, breaks[-1], y, col='grey', ...)
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1s6bm1323861495.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y),diag.panel=panel.hist, upper.panel=panel.smooth, lower.panel=panel.tau, main=main)
Warning messages:
1: In strwidth(labels, "user") : font width unknown for character 0xd
2: In text.default(x, y, txt, cex = cex, font = font) :
  font width unknown for character 0xd
3: In text.default(x, y, txt, cex = cex, font = font) :
  font metrics unknown for character 0xd
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> n <- length(y[,1])
> n
[1] 5
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,paste('Correlations for all pairs of data series (method=',par1,')',sep=''),n+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,' ',header=TRUE)
> for (i in 1:n) {
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ }
> a<-table.row.end(a)
> for (i in 1:n) {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ for (j in 1:n) {
+ r <- cor.test(y[i,],y[j,],method=par1)
+ a<-table.element(a,round(r$estimate,3))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/2togq1323861495.tab") 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Correlations for all pairs of data series with p-values',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'pair',1,TRUE)
> a<-table.element(a,'Pearson r',1,TRUE)
> a<-table.element(a,'Spearman rho',1,TRUE)
> a<-table.element(a,'Kendall tau',1,TRUE)
> a<-table.row.end(a)
> cor.test(y[1,],y[2,],method=par1)

	Pearson's product-moment correlation

data:  y[1, ] and y[2, ] 
t = 7.6685, df = 169, p-value = 1.308e-12
alternative hypothesis: true correlation is not equal to 0 
95 percent confidence interval:
 0.3875517 0.6115194 
sample estimates:
      cor 
0.5080741 

> for (i in 1:(n-1))
+ {
+ for (j in (i+1):n)
+ {
+ a<-table.row.start(a)
+ dum <- paste(dimnames(t(x))[[2]][i],';',dimnames(t(x))[[2]][j],sep='')
+ a<-table.element(a,dum,header=TRUE)
+ rp <- cor.test(y[i,],y[j,],method='pearson')
+ a<-table.element(a,round(rp$estimate,4))
+ rs <- cor.test(y[i,],y[j,],method='spearman')
+ a<-table.element(a,round(rs$estimate,4))
+ rk <- cor.test(y[i,],y[j,],method='kendall')
+ a<-table.element(a,round(rk$estimate,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'p-value',header=T)
+ a<-table.element(a,paste('(',round(rp$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rs$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rk$p.value,4),')',sep=''))
+ a<-table.row.end(a)
+ }
+ }
Warning messages:
1: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
2: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
3: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
4: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
5: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
6: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
7: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
8: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
9: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
10: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3jdin1323861495.tab") 
> 
> try(system("convert tmp/1s6bm1323861495.ps tmp/1s6bm1323861495.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.140   0.117   1.344