R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

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Type 'q()' to quit R.

> x <- array(list(158147
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+ ,23494)
+ ,dim=c(6
+ ,144)
+ ,dimnames=list(c('time'
+ ,'pageviews'
+ ,'logins'
+ ,'BC'
+ ,'review'
+ ,'char')
+ ,1:144))
>  y <- array(NA,dim=c(6,144),dimnames=list(c('time','pageviews','logins','BC','review','char'),1:144))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'no'
> par3 = '2'
> par2 = 'hclust'
> par1 = '1'
> library(party)
Loading required package: survival
Loading required package: splines
Loading required package: grid
Loading required package: modeltools
Loading required package: stats4
Loading required package: coin
Loading required package: mvtnorm
Loading required package: zoo
Loading required package: sandwich
Loading required package: strucchange
Loading required package: vcd
Loading required package: MASS
Loading required package: colorspace
> library(Hmisc)

Attaching package: 'Hmisc'

The following object(s) are masked from 'package:survival':

    untangle.specials

The following object(s) are masked from 'package:base':

    format.pval, round.POSIXt, trunc.POSIXt, units

> par1 <- as.numeric(par1)
> par3 <- as.numeric(par3)
> x <- data.frame(t(y))
> is.data.frame(x)
[1] TRUE
> x <- x[!is.na(x[,par1]),]
> k <- length(x[1,])
> n <- length(x[,1])
> colnames(x)[par1]
[1] "time"
> x[,par1]
  [1] 158147 182462   7215 122259 222405 485890 150777 160529 133238 275326
 [11] 121821 172489  89942 208851 151886 145427 134153  64149 122417  27997
 [21]  65004 205417 188103 118698 143682 140172 186377 174870 317699 192335
 [31] 151621 167466 125909 221896 217447      0 207163  93107 133763 246427
 [41] 224097 142057  94332 171724 101683 156753  81293 201984 219875 156589
 [51]  48188 138146 279590 234829 181731 141014 189220  76419 151898 189402
 [61] 140189 123181 124234 107277 153813  94982 178613 138708 102378  31970
 [71] 211635 111885  99687 102900 156475  74513 159186 155818  60138  84971
 [81]  80478 244325  56486 110743  75092 148286 222914 115019  93083 143258
 [91] 117794 158586 151465 124626  51801 223020 188957  19349 188069 150561
[101]  53921  58280 124951 112263  72904  27676 131274 117451      0  85610
[111] 107175 133024 136473  71894   3616      0 154806 137977 149846 113245
[121]  43410 170330  89410 112749  60373  19764 160995 121052 150039  11796
[131]  10674 134836   6836 153278   5118  40248      0 117842  87635   7131
[141]   8812  68916 132686  94127
> if (par2 == 'kmeans') {
+ cl <- kmeans(x[,par1], par3)
+ print(cl)
+ clm <- matrix(cbind(cl$centers,1:par3),ncol=2)
+ clm <- clm[sort.list(clm[,1]),]
+ for (i in 1:par3) {
+ cl$cluster[cl$cluster==clm[i,2]] <- paste('C',i,sep='')
+ }
+ cl$cluster <- as.factor(cl$cluster)
+ print(cl$cluster)
+ x[,par1] <- cl$cluster
+ }
> if (par2 == 'quantiles') {
+ x[,par1] <- cut2(x[,par1],g=par3)
+ }
> if (par2 == 'hclust') {
+ hc <- hclust(dist(x[,par1])^2, 'cen')
+ print(hc)
+ memb <- cutree(hc, k = par3)
+ dum <- c(mean(x[memb==1,par1]))
+ for (i in 2:par3) {
+ dum <- c(dum, mean(x[memb==i,par1]))
+ }
+ hcm <- matrix(cbind(dum,1:par3),ncol=2)
+ hcm <- hcm[sort.list(hcm[,1]),]
+ for (i in 1:par3) {
+ memb[memb==hcm[i,2]] <- paste('C',i,sep='')
+ }
+ memb <- as.factor(memb)
+ print(memb)
+ x[,par1] <- memb
+ }

Call:
hclust(d = dist(x[, par1])^2, method = "cen")

Cluster method   : centroid 
Distance         : euclidean 
Number of objects: 144 

  [1] C1 C1 C1 C1 C1 C2 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
 [26] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
 [51] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
 [76] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
[101] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
[126] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
Levels: C1 C2
> if (par2=='equal') {
+ ed <- cut(as.numeric(x[,par1]),par3,labels=paste('C',1:par3,sep=''))
+ x[,par1] <- as.factor(ed)
+ }
> table(x[,par1])

 C1  C2 
143   1 
> colnames(x)
[1] "time"      "pageviews" "logins"    "BC"        "review"    "char"     
> colnames(x)[par1]
[1] "time"
> x[,par1]
  [1] C1 C1 C1 C1 C1 C2 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
 [26] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
 [51] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
 [76] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
[101] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
[126] C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1 C1
Levels: C1 C2
> if (par2 == 'none') {
+ m <- ctree(as.formula(paste(colnames(x)[par1],' ~ .',sep='')),data = x)
+ }
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> if (par2 != 'none') {
+ m <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data = x)
+ if (par4=='yes') {
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'10-Fold Cross Validation',3+2*par3,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'',1,TRUE)
+ a<-table.element(a,'Prediction (training)',par3+1,TRUE)
+ a<-table.element(a,'Prediction (testing)',par3+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Actual',1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE)
+ a<-table.element(a,'CV',1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE)
+ a<-table.element(a,'CV',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:10) {
+ ind <- sample(2, nrow(x), replace=T, prob=c(0.9,0.1))
+ m.ct <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data =x[ind==1,])
+ if (i==1) {
+ m.ct.i.pred <- predict(m.ct, newdata=x[ind==1,])
+ m.ct.i.actu <- x[ind==1,par1]
+ m.ct.x.pred <- predict(m.ct, newdata=x[ind==2,])
+ m.ct.x.actu <- x[ind==2,par1]
+ } else {
+ m.ct.i.pred <- c(m.ct.i.pred,predict(m.ct, newdata=x[ind==1,]))
+ m.ct.i.actu <- c(m.ct.i.actu,x[ind==1,par1])
+ m.ct.x.pred <- c(m.ct.x.pred,predict(m.ct, newdata=x[ind==2,]))
+ m.ct.x.actu <- c(m.ct.x.actu,x[ind==2,par1])
+ }
+ }
+ print(m.ct.i.tab <- table(m.ct.i.actu,m.ct.i.pred))
+ numer <- 0
+ for (i in 1:par3) {
+ print(m.ct.i.tab[i,i] / sum(m.ct.i.tab[i,]))
+ numer <- numer + m.ct.i.tab[i,i]
+ }
+ print(m.ct.i.cp <- numer / sum(m.ct.i.tab))
+ print(m.ct.x.tab <- table(m.ct.x.actu,m.ct.x.pred))
+ numer <- 0
+ for (i in 1:par3) {
+ print(m.ct.x.tab[i,i] / sum(m.ct.x.tab[i,]))
+ numer <- numer + m.ct.x.tab[i,i]
+ }
+ print(m.ct.x.cp <- numer / sum(m.ct.x.tab))
+ for (i in 1:par3) {
+ a<-table.row.start(a)
+ a<-table.element(a,paste('C',i,sep=''),1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,m.ct.i.tab[i,jjj])
+ a<-table.element(a,round(m.ct.i.tab[i,i]/sum(m.ct.i.tab[i,]),4))
+ for (jjj in 1:par3) a<-table.element(a,m.ct.x.tab[i,jjj])
+ a<-table.element(a,round(m.ct.x.tab[i,i]/sum(m.ct.x.tab[i,]),4))
+ a<-table.row.end(a)
+ }
+ a<-table.row.start(a)
+ a<-table.element(a,'Overall',1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,'-')
+ a<-table.element(a,round(m.ct.i.cp,4))
+ for (jjj in 1:par3) a<-table.element(a,'-')
+ a<-table.element(a,round(m.ct.x.cp,4))
+ a<-table.row.end(a)
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/1hytx1324477837.tab") 
+ }
+ }
> m

	 Conditional inference tree with 2 terminal nodes

Response:  as.factor(time) 
Inputs:  pageviews, logins, BC, review, char 
Number of observations:  144 

1) pageviews <= 2704; criterion = 1, statistic = 37.904
  2)*  weights = 137 
1) pageviews > 2704
  3)*  weights = 7 
> postscript(file="/var/wessaorg/rcomp/tmp/2bbao1324477837.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> plot(m)
> dev.off()
null device 
          1 
> postscript(file="/var/wessaorg/rcomp/tmp/3uhw01324477837.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> plot(x[,par1] ~ as.factor(where(m)),main='Response by Terminal Node',xlab='Terminal Node',ylab='Response')
> dev.off()
null device 
          1 
> if (par2 == 'none') {
+ forec <- predict(m)
+ result <- as.data.frame(cbind(x[,par1],forec,x[,par1]-forec))
+ colnames(result) <- c('Actuals','Forecasts','Residuals')
+ print(result)
+ }
> if (par2 != 'none') {
+ print(cbind(as.factor(x[,par1]),predict(m)))
+ myt <- table(as.factor(x[,par1]),predict(m))
+ print(myt)
+ }
       [,1] [,2]
  [1,]    1    1
  [2,]    1    1
  [3,]    1    1
  [4,]    1    1
  [5,]    1    1
  [6,]    2    1
  [7,]    1    1
  [8,]    1    1
  [9,]    1    1
 [10,]    1    1
 [11,]    1    1
 [12,]    1    1
 [13,]    1    1
 [14,]    1    1
 [15,]    1    1
 [16,]    1    1
 [17,]    1    1
 [18,]    1    1
 [19,]    1    1
 [20,]    1    1
 [21,]    1    1
 [22,]    1    1
 [23,]    1    1
 [24,]    1    1
 [25,]    1    1
 [26,]    1    1
 [27,]    1    1
 [28,]    1    1
 [29,]    1    1
 [30,]    1    1
 [31,]    1    1
 [32,]    1    1
 [33,]    1    1
 [34,]    1    1
 [35,]    1    1
 [36,]    1    1
 [37,]    1    1
 [38,]    1    1
 [39,]    1    1
 [40,]    1    1
 [41,]    1    1
 [42,]    1    1
 [43,]    1    1
 [44,]    1    1
 [45,]    1    1
 [46,]    1    1
 [47,]    1    1
 [48,]    1    1
 [49,]    1    1
 [50,]    1    1
 [51,]    1    1
 [52,]    1    1
 [53,]    1    1
 [54,]    1    1
 [55,]    1    1
 [56,]    1    1
 [57,]    1    1
 [58,]    1    1
 [59,]    1    1
 [60,]    1    1
 [61,]    1    1
 [62,]    1    1
 [63,]    1    1
 [64,]    1    1
 [65,]    1    1
 [66,]    1    1
 [67,]    1    1
 [68,]    1    1
 [69,]    1    1
 [70,]    1    1
 [71,]    1    1
 [72,]    1    1
 [73,]    1    1
 [74,]    1    1
 [75,]    1    1
 [76,]    1    1
 [77,]    1    1
 [78,]    1    1
 [79,]    1    1
 [80,]    1    1
 [81,]    1    1
 [82,]    1    1
 [83,]    1    1
 [84,]    1    1
 [85,]    1    1
 [86,]    1    1
 [87,]    1    1
 [88,]    1    1
 [89,]    1    1
 [90,]    1    1
 [91,]    1    1
 [92,]    1    1
 [93,]    1    1
 [94,]    1    1
 [95,]    1    1
 [96,]    1    1
 [97,]    1    1
 [98,]    1    1
 [99,]    1    1
[100,]    1    1
[101,]    1    1
[102,]    1    1
[103,]    1    1
[104,]    1    1
[105,]    1    1
[106,]    1    1
[107,]    1    1
[108,]    1    1
[109,]    1    1
[110,]    1    1
[111,]    1    1
[112,]    1    1
[113,]    1    1
[114,]    1    1
[115,]    1    1
[116,]    1    1
[117,]    1    1
[118,]    1    1
[119,]    1    1
[120,]    1    1
[121,]    1    1
[122,]    1    1
[123,]    1    1
[124,]    1    1
[125,]    1    1
[126,]    1    1
[127,]    1    1
[128,]    1    1
[129,]    1    1
[130,]    1    1
[131,]    1    1
[132,]    1    1
[133,]    1    1
[134,]    1    1
[135,]    1    1
[136,]    1    1
[137,]    1    1
[138,]    1    1
[139,]    1    1
[140,]    1    1
[141,]    1    1
[142,]    1    1
[143,]    1    1
[144,]    1    1
    
      C1  C2
  C1 143   0
  C2   1   0
> postscript(file="/var/wessaorg/rcomp/tmp/4pp111324477837.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if(par2=='none') {
+ op <- par(mfrow=c(2,2))
+ plot(density(result$Actuals),main='Kernel Density Plot of Actuals')
+ plot(density(result$Residuals),main='Kernel Density Plot of Residuals')
+ plot(result$Forecasts,result$Actuals,main='Actuals versus Predictions',xlab='Predictions',ylab='Actuals')
+ plot(density(result$Forecasts),main='Kernel Density Plot of Predictions')
+ par(op)
+ }
> if(par2!='none') {
+ plot(myt,main='Confusion Matrix',xlab='Actual',ylab='Predicted')
+ }
> dev.off()
null device 
          1 
> if (par2 == 'none') {
+ detcoef <- cor(result$Forecasts,result$Actuals)
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Goodness of Fit',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Correlation',1,TRUE)
+ a<-table.element(a,round(detcoef,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'R-squared',1,TRUE)
+ a<-table.element(a,round(detcoef*detcoef,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'RMSE',1,TRUE)
+ a<-table.element(a,round(sqrt(mean((result$Residuals)^2)),4))
+ a<-table.row.end(a)
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/5zb261324477837.tab") 
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Actuals, Predictions, and Residuals',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'#',header=TRUE)
+ a<-table.element(a,'Actuals',header=TRUE)
+ a<-table.element(a,'Forecasts',header=TRUE)
+ a<-table.element(a,'Residuals',header=TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(result$Actuals)) {
+ a<-table.row.start(a)
+ a<-table.element(a,i,header=TRUE)
+ a<-table.element(a,result$Actuals[i])
+ a<-table.element(a,result$Forecasts[i])
+ a<-table.element(a,result$Residuals[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/61tjg1324477837.tab") 
+ }
> if (par2 != 'none') {
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Confusion Matrix (predicted in columns / actuals in rows)',par3+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'',1,TRUE)
+ for (i in 1:par3) {
+ a<-table.element(a,paste('C',i,sep=''),1,TRUE)
+ }
+ a<-table.row.end(a)
+ for (i in 1:par3) {
+ a<-table.row.start(a)
+ a<-table.element(a,paste('C',i,sep=''),1,TRUE)
+ for (j in 1:par3) {
+ a<-table.element(a,myt[i,j])
+ }
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/7izwk1324477837.tab") 
+ }
> 
> try(system("convert tmp/2bbao1324477837.ps tmp/2bbao1324477837.png",intern=TRUE))
character(0)
> try(system("convert tmp/3uhw01324477837.ps tmp/3uhw01324477837.png",intern=TRUE))
character(0)
> try(system("convert tmp/4pp111324477837.ps tmp/4pp111324477837.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  2.708   0.290   3.000