R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

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> x <- array(list(1826
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+ ,dim=c(7
+ ,144)
+ ,dimnames=list(c('Pageviews'
+ ,'TimeRFC'
+ ,'Logins'
+ ,'Computations'
+ ,'ReviewCompendium'
+ ,'CompendiumCharacters'
+ ,'CompendiumWritingSeconds')
+ ,1:144))
>  y <- array(NA,dim=c(7,144),dimnames=list(c('Pageviews','TimeRFC','Logins','Computations','ReviewCompendium','CompendiumCharacters','CompendiumWritingSeconds'),1:144))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'no'
> par3 = '3'
> par2 = 'quantiles'
> par1 = '2'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Dr. Ian E. Holliday
> #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: 
> #Technical description: 
> library(party)
Loading required package: survival
Loading required package: splines
Loading required package: grid
Loading required package: modeltools
Loading required package: stats4
Loading required package: coin
Loading required package: mvtnorm
Loading required package: zoo
Loading required package: sandwich
Loading required package: strucchange
Loading required package: vcd
Loading required package: MASS
Loading required package: colorspace
> library(Hmisc)

Attaching package: 'Hmisc'

The following object(s) are masked from 'package:survival':

    untangle.specials

The following object(s) are masked from 'package:base':

    format.pval, round.POSIXt, trunc.POSIXt, units

> par1 <- as.numeric(par1)
> par3 <- as.numeric(par3)
> x <- data.frame(t(y))
> is.data.frame(x)
[1] TRUE
> x <- x[!is.na(x[,par1]),]
> k <- length(x[1,])
> n <- length(x[,1])
> colnames(x)[par1]
[1] "TimeRFC"
> x[,par1]
  [1] 161442 189695   7215 129098 245678 515038 183078 185559 154581 298001
 [11] 121844 203796 101647 220490 170952 154647 142025  79030 167047  27997
 [21]  84588 241082 195820 142001 157178 183744 212298 201403 354924 192399
 [31] 182286 181590 134868 235002 228872      0 223044 100129 145864 252386
 [41] 242379 156399 103623 195891 139654 167934  81293 246211 233155 160344
 [51]  48188 161922 311044 235223 195583 155574 208834 101687 151985 201027
 [61] 163061 144556 129561 122204 160930 109798 192811 138708 114408  31970
 [71] 225558 142907 113612 119537 162203 100098 174768 158459  88128  84971
 [81]  80545 287191  67006 134091  95803 173833 241469 115367 115603 155537
 [91] 153133 177260 151517 133686  61350 245196 195576  19349 242863 157269
[101]  66802  91762 151077 133642  85338  27676 162934 122417      0  91529
[111] 107205 144664 146445  84940   3616      0 183088 148089 173083 128944
[121]  43410 175774  95401 134837  60493  19764 164062 138469 155367  11796
[131]  10674 144927   6836 162563   5118  40248      0 124079  88837   7131
[141]   9056  76611 142829 100681
> if (par2 == 'kmeans') {
+ cl <- kmeans(x[,par1], par3)
+ print(cl)
+ clm <- matrix(cbind(cl$centers,1:par3),ncol=2)
+ clm <- clm[sort.list(clm[,1]),]
+ for (i in 1:par3) {
+ cl$cluster[cl$cluster==clm[i,2]] <- paste('C',i,sep='')
+ }
+ cl$cluster <- as.factor(cl$cluster)
+ print(cl$cluster)
+ x[,par1] <- cl$cluster
+ }
> if (par2 == 'quantiles') {
+ x[,par1] <- cut2(x[,par1],g=par3)
+ }
> if (par2 == 'hclust') {
+ hc <- hclust(dist(x[,par1])^2, 'cen')
+ print(hc)
+ memb <- cutree(hc, k = par3)
+ dum <- c(mean(x[memb==1,par1]))
+ for (i in 2:par3) {
+ dum <- c(dum, mean(x[memb==i,par1]))
+ }
+ hcm <- matrix(cbind(dum,1:par3),ncol=2)
+ hcm <- hcm[sort.list(hcm[,1]),]
+ for (i in 1:par3) {
+ memb[memb==hcm[i,2]] <- paste('C',i,sep='')
+ }
+ memb <- as.factor(memb)
+ print(memb)
+ x[,par1] <- memb
+ }
> if (par2=='equal') {
+ ed <- cut(as.numeric(x[,par1]),par3,labels=paste('C',1:par3,sep=''))
+ x[,par1] <- as.factor(ed)
+ }
> table(x[,par1])

[     0,115367) [115367,163061) [163061,515038] 
             48              48              48 
> colnames(x)
[1] "Pageviews"                "TimeRFC"                 
[3] "Logins"                   "Computations"            
[5] "ReviewCompendium"         "CompendiumCharacters"    
[7] "CompendiumWritingSeconds"
> colnames(x)[par1]
[1] "TimeRFC"
> x[,par1]
  [1] [115367,163061) [163061,515038] [     0,115367) [115367,163061)
  [5] [163061,515038] [163061,515038] [163061,515038] [163061,515038]
  [9] [115367,163061) [163061,515038] [115367,163061) [163061,515038]
 [13] [     0,115367) [163061,515038] [163061,515038] [115367,163061)
 [17] [115367,163061) [     0,115367) [163061,515038] [     0,115367)
 [21] [     0,115367) [163061,515038] [163061,515038] [115367,163061)
 [25] [115367,163061) [163061,515038] [163061,515038] [163061,515038]
 [29] [163061,515038] [163061,515038] [163061,515038] [163061,515038]
 [33] [115367,163061) [163061,515038] [163061,515038] [     0,115367)
 [37] [163061,515038] [     0,115367) [115367,163061) [163061,515038]
 [41] [163061,515038] [115367,163061) [     0,115367) [163061,515038]
 [45] [115367,163061) [163061,515038] [     0,115367) [163061,515038]
 [49] [163061,515038] [115367,163061) [     0,115367) [115367,163061)
 [53] [163061,515038] [163061,515038] [163061,515038] [115367,163061)
 [57] [163061,515038] [     0,115367) [115367,163061) [163061,515038]
 [61] [163061,515038] [115367,163061) [115367,163061) [115367,163061)
 [65] [115367,163061) [     0,115367) [163061,515038] [115367,163061)
 [69] [     0,115367) [     0,115367) [163061,515038] [115367,163061)
 [73] [     0,115367) [115367,163061) [115367,163061) [     0,115367)
 [77] [163061,515038] [115367,163061) [     0,115367) [     0,115367)
 [81] [     0,115367) [163061,515038] [     0,115367) [115367,163061)
 [85] [     0,115367) [163061,515038] [163061,515038] [115367,163061)
 [89] [115367,163061) [115367,163061) [115367,163061) [163061,515038]
 [93] [115367,163061) [115367,163061) [     0,115367) [163061,515038]
 [97] [163061,515038] [     0,115367) [163061,515038] [115367,163061)
[101] [     0,115367) [     0,115367) [115367,163061) [115367,163061)
[105] [     0,115367) [     0,115367) [115367,163061) [115367,163061)
[109] [     0,115367) [     0,115367) [     0,115367) [115367,163061)
[113] [115367,163061) [     0,115367) [     0,115367) [     0,115367)
[117] [163061,515038] [115367,163061) [163061,515038] [115367,163061)
[121] [     0,115367) [163061,515038] [     0,115367) [115367,163061)
[125] [     0,115367) [     0,115367) [163061,515038] [115367,163061)
[129] [115367,163061) [     0,115367) [     0,115367) [115367,163061)
[133] [     0,115367) [115367,163061) [     0,115367) [     0,115367)
[137] [     0,115367) [115367,163061) [     0,115367) [     0,115367)
[141] [     0,115367) [     0,115367) [115367,163061) [     0,115367)
Levels: [     0,115367) [115367,163061) [163061,515038]
> if (par2 == 'none') {
+ m <- ctree(as.formula(paste(colnames(x)[par1],' ~ .',sep='')),data = x)
+ }
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> if (par2 != 'none') {
+ m <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data = x)
+ if (par4=='yes') {
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'10-Fold Cross Validation',3+2*par3,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'',1,TRUE)
+ a<-table.element(a,'Prediction (training)',par3+1,TRUE)
+ a<-table.element(a,'Prediction (testing)',par3+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Actual',1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE)
+ a<-table.element(a,'CV',1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE)
+ a<-table.element(a,'CV',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:10) {
+ ind <- sample(2, nrow(x), replace=T, prob=c(0.9,0.1))
+ m.ct <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data =x[ind==1,])
+ if (i==1) {
+ m.ct.i.pred <- predict(m.ct, newdata=x[ind==1,])
+ m.ct.i.actu <- x[ind==1,par1]
+ m.ct.x.pred <- predict(m.ct, newdata=x[ind==2,])
+ m.ct.x.actu <- x[ind==2,par1]
+ } else {
+ m.ct.i.pred <- c(m.ct.i.pred,predict(m.ct, newdata=x[ind==1,]))
+ m.ct.i.actu <- c(m.ct.i.actu,x[ind==1,par1])
+ m.ct.x.pred <- c(m.ct.x.pred,predict(m.ct, newdata=x[ind==2,]))
+ m.ct.x.actu <- c(m.ct.x.actu,x[ind==2,par1])
+ }
+ }
+ print(m.ct.i.tab <- table(m.ct.i.actu,m.ct.i.pred))
+ numer <- 0
+ for (i in 1:par3) {
+ print(m.ct.i.tab[i,i] / sum(m.ct.i.tab[i,]))
+ numer <- numer + m.ct.i.tab[i,i]
+ }
+ print(m.ct.i.cp <- numer / sum(m.ct.i.tab))
+ print(m.ct.x.tab <- table(m.ct.x.actu,m.ct.x.pred))
+ numer <- 0
+ for (i in 1:par3) {
+ print(m.ct.x.tab[i,i] / sum(m.ct.x.tab[i,]))
+ numer <- numer + m.ct.x.tab[i,i]
+ }
+ print(m.ct.x.cp <- numer / sum(m.ct.x.tab))
+ for (i in 1:par3) {
+ a<-table.row.start(a)
+ a<-table.element(a,paste('C',i,sep=''),1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,m.ct.i.tab[i,jjj])
+ a<-table.element(a,round(m.ct.i.tab[i,i]/sum(m.ct.i.tab[i,]),4))
+ for (jjj in 1:par3) a<-table.element(a,m.ct.x.tab[i,jjj])
+ a<-table.element(a,round(m.ct.x.tab[i,i]/sum(m.ct.x.tab[i,]),4))
+ a<-table.row.end(a)
+ }
+ a<-table.row.start(a)
+ a<-table.element(a,'Overall',1,TRUE)
+ for (jjj in 1:par3) a<-table.element(a,'-')
+ a<-table.element(a,round(m.ct.i.cp,4))
+ for (jjj in 1:par3) a<-table.element(a,'-')
+ a<-table.element(a,round(m.ct.x.cp,4))
+ a<-table.row.end(a)
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/1j9mn1324588776.tab") 
+ }
+ }
> m

	 Conditional inference tree with 4 terminal nodes

Response:  as.factor(TimeRFC) 
Inputs:  Pageviews, Logins, Computations, ReviewCompendium, CompendiumCharacters, CompendiumWritingSeconds 
Number of observations:  144 

1) Pageviews <= 1117; criterion = 1, statistic = 72.325
  2)*  weights = 39 
1) Pageviews > 1117
  3) CompendiumWritingSeconds <= 55516; criterion = 1, statistic = 29.187
    4) Pageviews <= 1646; criterion = 0.997, statistic = 15.059
      5)*  weights = 33 
    4) Pageviews > 1646
      6)*  weights = 37 
  3) CompendiumWritingSeconds > 55516
    7)*  weights = 35 
> postscript(file="/var/wessaorg/rcomp/tmp/2i09h1324588776.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> plot(m)
> dev.off()
null device 
          1 
> postscript(file="/var/wessaorg/rcomp/tmp/31jzv1324588776.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> plot(x[,par1] ~ as.factor(where(m)),main='Response by Terminal Node',xlab='Terminal Node',ylab='Response')
> dev.off()
null device 
          1 
> if (par2 == 'none') {
+ forec <- predict(m)
+ result <- as.data.frame(cbind(x[,par1],forec,x[,par1]-forec))
+ colnames(result) <- c('Actuals','Forecasts','Residuals')
+ print(result)
+ }
> if (par2 != 'none') {
+ print(cbind(as.factor(x[,par1]),predict(m)))
+ myt <- table(as.factor(x[,par1]),predict(m))
+ print(myt)
+ }
       [,1] [,2]
  [1,]    2    2
  [2,]    3    3
  [3,]    1    1
  [4,]    2    2
  [5,]    3    3
  [6,]    3    3
  [7,]    3    3
  [8,]    3    3
  [9,]    2    2
 [10,]    3    3
 [11,]    2    2
 [12,]    3    3
 [13,]    1    2
 [14,]    3    3
 [15,]    3    2
 [16,]    2    2
 [17,]    2    3
 [18,]    1    2
 [19,]    3    2
 [20,]    1    1
 [21,]    1    1
 [22,]    3    3
 [23,]    3    2
 [24,]    2    2
 [25,]    2    2
 [26,]    3    2
 [27,]    3    3
 [28,]    3    3
 [29,]    3    3
 [30,]    3    3
 [31,]    3    2
 [32,]    3    3
 [33,]    2    2
 [34,]    3    2
 [35,]    3    3
 [36,]    1    1
 [37,]    3    2
 [38,]    1    2
 [39,]    2    2
 [40,]    3    3
 [41,]    3    3
 [42,]    2    2
 [43,]    1    1
 [44,]    3    3
 [45,]    2    2
 [46,]    3    2
 [47,]    1    1
 [48,]    3    2
 [49,]    3    3
 [50,]    2    2
 [51,]    1    1
 [52,]    2    2
 [53,]    3    3
 [54,]    3    2
 [55,]    3    3
 [56,]    2    2
 [57,]    3    2
 [58,]    1    1
 [59,]    2    3
 [60,]    3    2
 [61,]    3    2
 [62,]    2    2
 [63,]    2    2
 [64,]    2    2
 [65,]    2    2
 [66,]    1    2
 [67,]    3    3
 [68,]    2    2
 [69,]    1    1
 [70,]    1    1
 [71,]    3    3
 [72,]    2    2
 [73,]    1    2
 [74,]    2    2
 [75,]    2    2
 [76,]    1    2
 [77,]    3    2
 [78,]    2    3
 [79,]    1    1
 [80,]    1    2
 [81,]    1    1
 [82,]    3    3
 [83,]    1    1
 [84,]    2    2
 [85,]    1    2
 [86,]    3    2
 [87,]    3    3
 [88,]    2    2
 [89,]    2    2
 [90,]    2    2
 [91,]    2    3
 [92,]    3    3
 [93,]    2    2
 [94,]    2    2
 [95,]    1    1
 [96,]    3    3
 [97,]    3    3
 [98,]    1    1
 [99,]    3    2
[100,]    2    2
[101,]    1    1
[102,]    1    1
[103,]    2    2
[104,]    2    2
[105,]    1    1
[106,]    1    1
[107,]    2    2
[108,]    2    2
[109,]    1    1
[110,]    1    1
[111,]    1    2
[112,]    2    2
[113,]    2    2
[114,]    1    1
[115,]    1    1
[116,]    1    1
[117,]    3    3
[118,]    2    3
[119,]    3    2
[120,]    2    1
[121,]    1    1
[122,]    3    3
[123,]    1    1
[124,]    2    2
[125,]    1    1
[126,]    1    1
[127,]    3    2
[128,]    2    2
[129,]    2    2
[130,]    1    1
[131,]    1    1
[132,]    2    2
[133,]    1    1
[134,]    2    2
[135,]    1    1
[136,]    1    1
[137,]    1    1
[138,]    2    1
[139,]    1    2
[140,]    1    1
[141,]    1    1
[142,]    1    1
[143,]    2    2
[144,]    1    2
                 
                  [     0,115367) [115367,163061) [163061,515038]
  [     0,115367)              37              11               0
  [115367,163061)               2              41               5
  [163061,515038]               0              18              30
> postscript(file="/var/wessaorg/rcomp/tmp/412jb1324588776.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if(par2=='none') {
+ op <- par(mfrow=c(2,2))
+ plot(density(result$Actuals),main='Kernel Density Plot of Actuals')
+ plot(density(result$Residuals),main='Kernel Density Plot of Residuals')
+ plot(result$Forecasts,result$Actuals,main='Actuals versus Predictions',xlab='Predictions',ylab='Actuals')
+ plot(density(result$Forecasts),main='Kernel Density Plot of Predictions')
+ par(op)
+ }
> if(par2!='none') {
+ plot(myt,main='Confusion Matrix',xlab='Actual',ylab='Predicted')
+ }
> dev.off()
null device 
          1 
> if (par2 == 'none') {
+ detcoef <- cor(result$Forecasts,result$Actuals)
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Goodness of Fit',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Correlation',1,TRUE)
+ a<-table.element(a,round(detcoef,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'R-squared',1,TRUE)
+ a<-table.element(a,round(detcoef*detcoef,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'RMSE',1,TRUE)
+ a<-table.element(a,round(sqrt(mean((result$Residuals)^2)),4))
+ a<-table.row.end(a)
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/52bj11324588776.tab") 
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Actuals, Predictions, and Residuals',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'#',header=TRUE)
+ a<-table.element(a,'Actuals',header=TRUE)
+ a<-table.element(a,'Forecasts',header=TRUE)
+ a<-table.element(a,'Residuals',header=TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(result$Actuals)) {
+ a<-table.row.start(a)
+ a<-table.element(a,i,header=TRUE)
+ a<-table.element(a,result$Actuals[i])
+ a<-table.element(a,result$Forecasts[i])
+ a<-table.element(a,result$Residuals[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/62ttp1324588776.tab") 
+ }
> if (par2 != 'none') {
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Confusion Matrix (predicted in columns / actuals in rows)',par3+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'',1,TRUE)
+ for (i in 1:par3) {
+ a<-table.element(a,paste('C',i,sep=''),1,TRUE)
+ }
+ a<-table.row.end(a)
+ for (i in 1:par3) {
+ a<-table.row.start(a)
+ a<-table.element(a,paste('C',i,sep=''),1,TRUE)
+ for (j in 1:par3) {
+ a<-table.element(a,myt[i,j])
+ }
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/70rie1324588776.tab") 
+ }
> 
> try(system("convert tmp/2i09h1324588776.ps tmp/2i09h1324588776.png",intern=TRUE))
character(0)
> try(system("convert tmp/31jzv1324588776.ps tmp/31jzv1324588776.png",intern=TRUE))
character(0)
> try(system("convert tmp/412jb1324588776.ps tmp/412jb1324588776.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  2.840   0.291   3.129