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Type 'q()' to quit R. > x <- array(list(97 + ,197426 + ,39 + ,178377 + ,490 + ,146 + ,187326 + ,173 + ,250931 + ,2563 + ,116 + ,184923 + ,165 + ,226168 + ,1538 + ,113 + ,183500 + ,181 + ,211381 + ,898 + ,75 + ,176225 + ,139 + ,214738 + ,1212 + ,228 + ,169707 + ,166 + ,210012 + ,790 + ,138 + ,169265 + ,116 + ,163073 + ,738 + ,153 + ,167949 + ,114 + ,164263 + ,845 + ,248 + ,165986 + ,155 + ,189944 + ,1369 + ,161 + ,165933 + ,127 + ,147581 + ,1830 + ,155 + ,165904 + ,107 + ,127667 + ,711 + ,142 + ,160902 + ,126 + ,106330 + ,992 + ,145 + ,160141 + ,161 + ,175721 + ,1272 + ,159 + ,156349 + ,185 + ,169216 + ,852 + ,153 + ,154771 + ,63 + ,18284 + ,575 + ,130 + ,154451 + ,121 + ,134969 + ,1101 + ,177 + ,151911 + ,150 + ,191889 + ,1410 + ,181 + ,151715 + ,160 + ,197765 + ,1352 + ,140 + ,150491 + ,132 + ,194679 + ,1208 + ,196 + ,150047 + ,147 + ,75767 + ,739 + ,140 + ,149959 + ,176 + ,195894 + ,926 + ,175 + ,149695 + ,88 + ,191179 + ,865 + ,155 + ,147172 + ,82 + ,178303 + ,677 + ,147 + ,146975 + 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,83515 + ,158 + ,96785 + ,1370 + ,103 + ,83248 + ,146 + ,106020 + ,785 + ,148 + ,83243 + ,150 + ,153990 + ,763 + ,84 + ,82317 + ,77 + ,111848 + ,569 + ,144 + ,81897 + ,131 + ,89770 + ,781 + ,203 + ,81625 + ,132 + ,94853 + ,743 + ,160 + ,81351 + ,107 + ,102204 + ,900 + ,152 + ,79756 + ,80 + ,122531 + ,575 + ,147 + ,79089 + ,114 + ,169351 + ,981 + ,111 + ,79011 + ,97 + ,80238 + ,784 + ,89 + ,76173 + ,8 + ,47552 + ,179 + ,87 + ,72128 + ,163 + ,145707 + ,542 + ,121 + ,71571 + ,102 + ,75881 + ,746 + ,146 + ,71154 + ,137 + ,80906 + ,767 + ,100 + ,70168 + ,79 + ,104470 + ,695 + ,127 + ,69867 + ,83 + ,100826 + ,1186 + ,153 + ,69652 + ,56 + ,33750 + ,456 + ,87 + ,69446 + ,87 + ,113713 + ,724 + ,129 + ,68946 + ,164 + ,174586 + ,1145 + ,113 + ,68788 + ,57 + ,72591 + ,785 + ,124 + ,67150 + ,110 + ,114651 + ,905 + ,92 + ,66485 + ,104 + ,110896 + ,661 + ,112 + ,66089 + ,65 + ,61394 + ,507 + ,102 + ,65594 + ,48 + ,92795 + ,632 + ,115 + ,64593 + ,60 + ,72558 + ,790 + ,148 + ,64520 + ,68 + ,54518 + ,488 + ,135 + ,59938 + ,149 + ,82390 + ,1128 + ,97 + ,59900 + ,104 + ,96252 + ,1257 + ,59 + ,57224 + ,86 + ,80684 + ,800 + ,101 + ,56750 + ,89 + ,115750 + ,846 + ,27 + ,56622 + ,49 + ,55792 + ,437 + ,112 + ,55918 + ,74 + ,83963 + ,795 + ,89 + ,52789 + ,37 + ,15673 + ,309 + ,40 + ,48029 + ,120 + ,88634 + ,833 + ,130 + ,45724 + ,87 + ,74151 + ,641 + ,73 + ,43929 + ,83 + ,100792 + ,415 + ,64 + ,43750 + ,13 + ,19630 + ,214 + ,99 + ,38692 + ,30 + ,68580 + ,657 + ,78 + ,37238 + ,41 + ,10901 + ,716 + ,110 + ,37110 + ,67 + ,64057 + ,665) + ,dim=c(5 + ,137) + ,dimnames=list(c('FbackMess' + ,'CompendiumCharacters' + ,'BloggedComputations' + ,'CompendiumSeconds' + ,'CourseViews') + ,1:137)) > y <- array(NA,dim=c(5,137),dimnames=list(c('FbackMess','CompendiumCharacters','BloggedComputations','CompendiumSeconds','CourseViews'),1:137)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'no' > par3 = '3' > par2 = 'quantiles' > par1 = '2' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Dr. Ian E. Holliday > #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: > #Technical description: > library(party) Loading required package: survival Loading required package: splines Loading required package: grid Loading required package: modeltools Loading required package: stats4 Loading required package: coin Loading required package: mvtnorm Loading required package: zoo Loading required package: sandwich Loading required package: strucchange Loading required package: vcd Loading required package: MASS Loading required package: colorspace > library(Hmisc) Attaching package: 'Hmisc' The following object(s) are masked from 'package:survival': untangle.specials The following object(s) are masked from 'package:base': format.pval, round.POSIXt, trunc.POSIXt, units > par1 <- as.numeric(par1) > par3 <- as.numeric(par3) > x <- data.frame(t(y)) > is.data.frame(x) [1] TRUE > x <- x[!is.na(x[,par1]),] > k <- length(x[1,]) > n <- length(x[,1]) > colnames(x)[par1] [1] "CompendiumCharacters" > x[,par1] [1] 197426 187326 184923 183500 176225 169707 169265 167949 165986 165933 [11] 165904 160902 160141 156349 154771 154451 151911 151715 150491 150047 [21] 149959 149695 147172 146975 146760 144551 144408 144244 143592 140824 [31] 140358 140015 139165 136588 135356 134238 134047 131072 128692 127654 [41] 126817 126372 125818 125386 125081 124089 123534 120192 119442 118906 [51] 117440 116066 114948 114799 114360 113344 112431 112302 112098 110529 [61] 110459 109432 108535 108146 105079 104978 104767 104581 104128 103925 [71] 103297 103129 103037 102812 102153 102070 101629 101382 101047 100350 [81] 100087 100046 96125 95893 95676 93879 93487 93473 92622 92280 [91] 92059 89626 89506 89256 88977 86652 84601 83515 83248 83243 [101] 82317 81897 81625 81351 79756 79089 79011 76173 72128 71571 [111] 71154 70168 69867 69652 69446 68946 68788 67150 66485 66089 [121] 65594 64593 64520 59938 59900 57224 56750 56622 55918 52789 [131] 48029 45724 43929 43750 38692 37238 37110 > if (par2 == 'kmeans') { + cl <- kmeans(x[,par1], par3) + print(cl) + clm <- matrix(cbind(cl$centers,1:par3),ncol=2) + clm <- clm[sort.list(clm[,1]),] + for (i in 1:par3) { + cl$cluster[cl$cluster==clm[i,2]] <- paste('C',i,sep='') + } + cl$cluster <- as.factor(cl$cluster) + print(cl$cluster) + x[,par1] <- cl$cluster + } > if (par2 == 'quantiles') { + x[,par1] <- cut2(x[,par1],g=par3) + } > if (par2 == 'hclust') { + hc <- hclust(dist(x[,par1])^2, 'cen') + print(hc) + memb <- cutree(hc, k = par3) + dum <- c(mean(x[memb==1,par1])) + for (i in 2:par3) { + dum <- c(dum, mean(x[memb==i,par1])) + } + hcm <- matrix(cbind(dum,1:par3),ncol=2) + hcm <- hcm[sort.list(hcm[,1]),] + for (i in 1:par3) { + memb[memb==hcm[i,2]] <- paste('C',i,sep='') + } + memb <- as.factor(memb) + print(memb) + x[,par1] <- memb + } > if (par2=='equal') { + ed <- cut(as.numeric(x[,par1]),par3,labels=paste('C',1:par3,sep='')) + x[,par1] <- as.factor(ed) + } > table(x[,par1]) [ 37110, 92059) [ 92059,125081) [125081,197426] 46 46 45 > colnames(x) [1] "FbackMess" "CompendiumCharacters" "BloggedComputations" [4] "CompendiumSeconds" "CourseViews" > colnames(x)[par1] [1] "CompendiumCharacters" > x[,par1] [1] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [5] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [9] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [13] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [17] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [21] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [25] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [29] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [33] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [37] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [41] [125081,197426] [125081,197426] [125081,197426] [125081,197426] [45] [125081,197426] [ 92059,125081) [ 92059,125081) [ 92059,125081) [49] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [53] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [57] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [61] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [65] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [69] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [73] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [77] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [81] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [85] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 92059,125081) [89] [ 92059,125081) [ 92059,125081) [ 92059,125081) [ 37110, 92059) [93] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [97] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [101] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [105] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [109] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [113] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [117] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [121] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [125] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [129] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [133] [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [ 37110, 92059) [137] [ 37110, 92059) Levels: [ 37110, 92059) [ 92059,125081) [125081,197426] > if (par2 == 'none') { + m <- ctree(as.formula(paste(colnames(x)[par1],' ~ .',sep='')),data = x) + } > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > if (par2 != 'none') { + m <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data = x) + if (par4=='yes') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'10-Fold Cross Validation',3+2*par3,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'',1,TRUE) + a<-table.element(a,'Prediction (training)',par3+1,TRUE) + a<-table.element(a,'Prediction (testing)',par3+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Actual',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) + a<-table.element(a,'CV',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) + a<-table.element(a,'CV',1,TRUE) + a<-table.row.end(a) + for (i in 1:10) { + ind <- sample(2, nrow(x), replace=T, prob=c(0.9,0.1)) + m.ct <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data =x[ind==1,]) + if (i==1) { + m.ct.i.pred <- predict(m.ct, newdata=x[ind==1,]) + m.ct.i.actu <- x[ind==1,par1] + m.ct.x.pred <- predict(m.ct, newdata=x[ind==2,]) + m.ct.x.actu <- x[ind==2,par1] + } else { + m.ct.i.pred <- c(m.ct.i.pred,predict(m.ct, newdata=x[ind==1,])) + m.ct.i.actu <- c(m.ct.i.actu,x[ind==1,par1]) + m.ct.x.pred <- c(m.ct.x.pred,predict(m.ct, newdata=x[ind==2,])) + m.ct.x.actu <- c(m.ct.x.actu,x[ind==2,par1]) + } + } + print(m.ct.i.tab <- table(m.ct.i.actu,m.ct.i.pred)) + numer <- 0 + for (i in 1:par3) { + print(m.ct.i.tab[i,i] / sum(m.ct.i.tab[i,])) + numer <- numer + m.ct.i.tab[i,i] + } + print(m.ct.i.cp <- numer / sum(m.ct.i.tab)) + print(m.ct.x.tab <- table(m.ct.x.actu,m.ct.x.pred)) + numer <- 0 + for (i in 1:par3) { + print(m.ct.x.tab[i,i] / sum(m.ct.x.tab[i,])) + numer <- numer + m.ct.x.tab[i,i] + } + print(m.ct.x.cp <- numer / sum(m.ct.x.tab)) + for (i in 1:par3) { + a<-table.row.start(a) + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + for (jjj in 1:par3) a<-table.element(a,m.ct.i.tab[i,jjj]) + a<-table.element(a,round(m.ct.i.tab[i,i]/sum(m.ct.i.tab[i,]),4)) + for (jjj in 1:par3) a<-table.element(a,m.ct.x.tab[i,jjj]) + a<-table.element(a,round(m.ct.x.tab[i,i]/sum(m.ct.x.tab[i,]),4)) + a<-table.row.end(a) + } + a<-table.row.start(a) + a<-table.element(a,'Overall',1,TRUE) + for (jjj in 1:par3) a<-table.element(a,'-') + a<-table.element(a,round(m.ct.i.cp,4)) + for (jjj in 1:par3) a<-table.element(a,'-') + a<-table.element(a,round(m.ct.x.cp,4)) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/1al2v1324671746.tab") + } + } > m Conditional inference tree with 3 terminal nodes Response: as.factor(CompendiumCharacters) Inputs: FbackMess, BloggedComputations, CompendiumSeconds, CourseViews Number of observations: 137 1) CompendiumSeconds <= 115750; criterion = 1, statistic = 35.178 2)* weights = 67 1) CompendiumSeconds > 115750 3) CompendiumSeconds <= 174586; criterion = 0.969, statistic = 9.725 4)* weights = 45 3) CompendiumSeconds > 174586 5)* weights = 25 > postscript(file="/var/wessaorg/rcomp/tmp/2e3p01324671746.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(m) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3xhno1324671746.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(x[,par1] ~ as.factor(where(m)),main='Response by Terminal Node',xlab='Terminal Node',ylab='Response') > dev.off() null device 1 > if (par2 == 'none') { + forec <- predict(m) + result <- as.data.frame(cbind(x[,par1],forec,x[,par1]-forec)) + colnames(result) <- c('Actuals','Forecasts','Residuals') + print(result) + } > if (par2 != 'none') { + print(cbind(as.factor(x[,par1]),predict(m))) + myt <- table(as.factor(x[,par1]),predict(m)) + print(myt) + } [,1] [,2] [1,] 3 3 [2,] 3 3 [3,] 3 3 [4,] 3 3 [5,] 3 3 [6,] 3 3 [7,] 3 2 [8,] 3 2 [9,] 3 3 [10,] 3 2 [11,] 3 2 [12,] 3 1 [13,] 3 3 [14,] 3 2 [15,] 3 1 [16,] 3 2 [17,] 3 3 [18,] 3 3 [19,] 3 3 [20,] 3 1 [21,] 3 3 [22,] 3 3 [23,] 3 3 [24,] 3 2 [25,] 3 3 [26,] 3 1 [27,] 3 1 [28,] 3 1 [29,] 3 1 [30,] 3 3 [31,] 3 2 [32,] 3 2 [33,] 3 3 [34,] 3 2 [35,] 3 1 [36,] 3 3 [37,] 3 3 [38,] 3 1 [39,] 3 1 [40,] 3 1 [41,] 3 1 [42,] 3 2 [43,] 3 1 [44,] 3 2 [45,] 3 2 [46,] 2 2 [47,] 2 1 [48,] 2 3 [49,] 2 3 [50,] 2 1 [51,] 2 2 [52,] 2 1 [53,] 2 2 [54,] 2 2 [55,] 2 1 [56,] 2 3 [57,] 2 2 [58,] 2 3 [59,] 2 1 [60,] 2 3 [61,] 2 1 [62,] 2 2 [63,] 2 2 [64,] 2 1 [65,] 2 1 [66,] 2 2 [67,] 2 2 [68,] 2 2 [69,] 2 2 [70,] 2 2 [71,] 2 1 [72,] 2 2 [73,] 2 2 [74,] 2 2 [75,] 2 1 [76,] 2 1 [77,] 2 3 [78,] 2 2 [79,] 2 2 [80,] 2 1 [81,] 2 2 [82,] 2 2 [83,] 2 1 [84,] 2 1 [85,] 2 2 [86,] 2 2 [87,] 2 2 [88,] 2 2 [89,] 2 2 [90,] 2 2 [91,] 2 1 [92,] 1 2 [93,] 1 2 [94,] 1 1 [95,] 1 1 [96,] 1 1 [97,] 1 1 [98,] 1 1 [99,] 1 1 [100,] 1 2 [101,] 1 1 [102,] 1 1 [103,] 1 1 [104,] 1 1 [105,] 1 2 [106,] 1 2 [107,] 1 1 [108,] 1 1 [109,] 1 2 [110,] 1 1 [111,] 1 1 [112,] 1 1 [113,] 1 1 [114,] 1 1 [115,] 1 1 [116,] 1 2 [117,] 1 1 [118,] 1 1 [119,] 1 1 [120,] 1 1 [121,] 1 1 [122,] 1 1 [123,] 1 1 [124,] 1 1 [125,] 1 1 [126,] 1 1 [127,] 1 1 [128,] 1 1 [129,] 1 1 [130,] 1 1 [131,] 1 1 [132,] 1 1 [133,] 1 1 [134,] 1 1 [135,] 1 1 [136,] 1 1 [137,] 1 1 [ 37110, 92059) [ 92059,125081) [125081,197426] [ 37110, 92059) 39 7 0 [ 92059,125081) 15 25 6 [125081,197426] 13 13 19 > postscript(file="/var/wessaorg/rcomp/tmp/4s6j91324671746.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if(par2=='none') { + op <- par(mfrow=c(2,2)) + plot(density(result$Actuals),main='Kernel Density Plot of Actuals') + plot(density(result$Residuals),main='Kernel Density Plot of Residuals') + plot(result$Forecasts,result$Actuals,main='Actuals versus Predictions',xlab='Predictions',ylab='Actuals') + plot(density(result$Forecasts),main='Kernel Density Plot of Predictions') + par(op) + } > if(par2!='none') { + plot(myt,main='Confusion Matrix',xlab='Actual',ylab='Predicted') + } > dev.off() null device 1 > if (par2 == 'none') { + detcoef <- cor(result$Forecasts,result$Actuals) + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Goodness of Fit',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Correlation',1,TRUE) + a<-table.element(a,round(detcoef,4)) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'R-squared',1,TRUE) + a<-table.element(a,round(detcoef*detcoef,4)) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'RMSE',1,TRUE) + a<-table.element(a,round(sqrt(mean((result$Residuals)^2)),4)) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/5kwan1324671746.tab") + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Actuals, Predictions, and Residuals',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'#',header=TRUE) + a<-table.element(a,'Actuals',header=TRUE) + a<-table.element(a,'Forecasts',header=TRUE) + a<-table.element(a,'Residuals',header=TRUE) + a<-table.row.end(a) + for (i in 1:length(result$Actuals)) { + a<-table.row.start(a) + a<-table.element(a,i,header=TRUE) + a<-table.element(a,result$Actuals[i]) + a<-table.element(a,result$Forecasts[i]) + a<-table.element(a,result$Residuals[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/6kkei1324671746.tab") + } > if (par2 != 'none') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Confusion Matrix (predicted in columns / actuals in rows)',par3+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'',1,TRUE) + for (i in 1:par3) { + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + } + a<-table.row.end(a) + for (i in 1:par3) { + a<-table.row.start(a) + a<-table.element(a,paste('C',i,sep=''),1,TRUE) + for (j in 1:par3) { + a<-table.element(a,myt[i,j]) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/7d4av1324671746.tab") + } > > try(system("convert tmp/2e3p01324671746.ps tmp/2e3p01324671746.png",intern=TRUE)) character(0) > try(system("convert tmp/3xhno1324671746.ps tmp/3xhno1324671746.png",intern=TRUE)) character(0) > try(system("convert tmp/4s6j91324671746.ps tmp/4s6j91324671746.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 2.553 0.221 2.774