R version 2.13.0 (2011-04-13) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i486-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- array(list(68.95,70.18,70.84,69.94,70.26,69.61,70.93,71.39,70.71,72.54,70.73,70.48,70.20,70.48,69.76,71.68,71.46,70.59,70.31,71.61,69.24,70.56,70.94,72.74,68.98,72.63,71.16,71.58,69.96,70.14,69.66,71.22,70.20,70.72,69.99,71.37,71.97,69.73,68.29,71.29,67.67,73.19,70.07,70.64,70.89,69.30,69.66,71.76,71.12,70.28,70.60,69.77,70.09,70.37,70.55,71.70,71.63,70.85,69.30,71.07),dim=c(2,30),dimnames=list(c('Drug','Placebo'),1:30)) > y <- array(NA,dim=c(2,30),dimnames=list(c('Drug','Placebo'),1:30)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par8 = 'TRUE' > par7 = '0.95' > par6 = '0.0' > par5 = 'unpaired' > par4 = 'T-Test' > par3 = '2' > par2 = '1' > par1 = 'two.sided' > ylab = 'Y-Axis Title' > xlab = 'X-Axis Title' > main = 'Boxplots Title' > par2 <- as.numeric(par2) > par3 <- as.numeric(par3) > par4 <- as.character(par4) > par5 <- as.character(par5) > par6 <- as.numeric(par6) > par7 <- as.numeric(par7) > par8 <- as.logical(par8) > if ( par5 == 'unpaired') paired <- FALSE else paired <- TRUE > x <- t(y) > if(par8){ + postscript(file="/var/wessaorg/rcomp/tmp/1gv9q1320932101.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + (r<-boxplot(x ,xlab=xlab,ylab=ylab,main=main,notch=FALSE,col=2)) + dev.off() + } null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > if( par4 == 'Wilcoxon-Mann_Whitney'){ + a<-table.start() + a <- table.row.start(a) + a <- table.element(a,'Wilcoxon Test',3,TRUE) + a <- table.row.end(a) + a <- table.row.start(a) + a <- table.element(a,'',1,TRUE) + a <- table.element(a,'Statistic',1,TRUE) + a <- table.element(a,'P-value',1,TRUE) + a <- table.row.end(a) + W <- wilcox.test(x[,par2],x[,par3],alternative=par1, paired = paired) + a<-table.row.start(a) + a<-table.element(a,'Wilcoxon Test',1,TRUE) + a<-table.element(a,W\$statistic[[1]]) + a<-table.element(a,round(W\$p.value, digits=5) ) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/2zxva1320932101.tab") + } > if( par4 == 'T-Test') + { + T <- t.test(x[,par2],x[,par3],alternative=par1, paired=paired, mu=par6, conf.level=par7) + a<-table.start() + a <- table.row.start(a) + a <- table.element(a,'T-Test',3,TRUE) + a <- table.row.end(a) + if(paired){ + a <- table.row.start(a) + a <- table.element(a,'Difference: Mean1 - Mean2',1,TRUE) + a<-table.element(a,round(T\$estimate, digits=5) ) + a <- table.row.end(a) + } + if(!paired){ + a <- table.row.start(a) + a <- table.element(a,'Mean1',1,TRUE) + a<-table.element(a,round(T\$estimate[1], digits=5) ) + a <- table.row.end(a) + a <- table.row.start(a) + a <- table.element(a,'Mean2',1,TRUE) + a<-table.element(a,round(T\$estimate[2], digits=5) ) + a <- table.row.end(a) + } + a <- table.row.start(a) + a <- table.element(a,'T Statistic',1,TRUE) + a<-table.element(a,round(T\$statistic, digits=5) ) + a <- table.row.end(a) + a <- table.row.start(a) + a <- table.element(a,'P-value',1,TRUE) + a<-table.element(a,round(T\$p.value, digits=5) ) + a <- table.row.end(a) + a <- table.row.start(a) + a <- table.element(a,'Lower Confidence Limit',1,TRUE) + a<-table.element(a,round(T\$conf.int[1], digits=5) ) + a <- table.row.end(a) + a<-table.row.start(a) + a <- table.element(a,'Upper Confidence Limit',1,TRUE) + a<-table.element(a,round(T\$conf.int[2], digits=5) ) + a <- table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/3j0bx1320932101.tab") + } > a<-table.start() > a <- table.row.start(a) > a <- table.element(a,'Standard Deviations',3,TRUE) > a <- table.row.end(a) > a <- table.row.start(a) > a <- table.element(a,'Variable 1',1,TRUE) > a<-table.element(a,round(sd(x[,par2]), digits=5) ) > a <- table.row.end(a) > a <- table.row.start(a) > a <- table.element(a,'Variable 2',1,TRUE) > a<-table.element(a,round(sd(x[,par3]), digits=5) ) > a <- table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/4vymm1320932101.tab") > > try(system("convert tmp/1gv9q1320932101.ps tmp/1gv9q1320932101.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.642 0.099 0.757