R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

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> x <- array(list('A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'D'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'A'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'C'
+ ,'Connected'
+ ,'B'
+ ,'Connected'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'D'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'A'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'C'
+ ,'Separate'
+ ,'B'
+ ,'Separate'
+ ,'B'
+ ,'Separate')
+ ,dim=c(2
+ ,324)
+ ,dimnames=list(c('Score'
+ ,'Behandeling')
+ ,1:324))
>  y <- array(NA,dim=c(2,324),dimnames=list(c('Score','Behandeling'),1:324))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
There were 50 or more warnings (use warnings() to see the first 50)
> par3 = 'Pearson Chi-Squared'
> par2 = '2'
> par1 = '1'
> main = 'Association Plot'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Dr. Ian E. Holliday
> #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: 
> #Technical description: 
> library(vcd)
Loading required package: MASS
Loading required package: grid
Loading required package: colorspace
> cat1 <- as.numeric(par1) #
> cat2<- as.numeric(par2) #
> simulate.p.value=FALSE
> if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE
> x <- t(x)
> (z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,]))))
       [,1] [,2]       
  [1,] "A"  "Connected"
  [2,] "A"  "Connected"
  [3,] "D"  "Connected"
  [4,] "D"  "Connected"
  [5,] "B"  "Connected"
  [6,] "B"  "Connected"
  [7,] "A"  "Connected"
  [8,] "B"  "Connected"
  [9,] "B"  "Connected"
 [10,] "A"  "Connected"
 [11,] "A"  "Connected"
 [12,] "B"  "Connected"
 [13,] "A"  "Connected"
 [14,] "A"  "Connected"
 [15,] "C"  "Connected"
 [16,] "C"  "Connected"
 [17,] "B"  "Connected"
 [18,] "A"  "Connected"
 [19,] "A"  "Connected"
 [20,] "C"  "Connected"
 [21,] "C"  "Connected"
 [22,] "D"  "Connected"
 [23,] "A"  "Connected"
 [24,] "A"  "Connected"
 [25,] "A"  "Connected"
 [26,] "A"  "Connected"
 [27,] "B"  "Connected"
 [28,] "C"  "Connected"
 [29,] "C"  "Connected"
 [30,] "B"  "Connected"
 [31,] "D"  "Connected"
 [32,] "D"  "Connected"
 [33,] "A"  "Connected"
 [34,] "B"  "Connected"
 [35,] "B"  "Connected"
 [36,] "C"  "Connected"
 [37,] "D"  "Connected"
 [38,] "B"  "Connected"
 [39,] "D"  "Connected"
 [40,] "B"  "Connected"
 [41,] "A"  "Connected"
 [42,] "B"  "Connected"
 [43,] "A"  "Connected"
 [44,] "B"  "Connected"
 [45,] "A"  "Connected"
 [46,] "A"  "Connected"
 [47,] "A"  "Connected"
 [48,] "C"  "Connected"
 [49,] "B"  "Connected"
 [50,] "A"  "Connected"
 [51,] "C"  "Connected"
 [52,] "C"  "Connected"
 [53,] "C"  "Connected"
 [54,] "B"  "Connected"
 [55,] "C"  "Connected"
 [56,] "A"  "Connected"
 [57,] "A"  "Connected"
 [58,] "D"  "Connected"
 [59,] "A"  "Connected"
 [60,] "B"  "Connected"
 [61,] "D"  "Connected"
 [62,] "A"  "Connected"
 [63,] "B"  "Connected"
 [64,] "D"  "Connected"
 [65,] "B"  "Connected"
 [66,] "B"  "Connected"
 [67,] "B"  "Connected"
 [68,] "D"  "Connected"
 [69,] "A"  "Connected"
 [70,] "B"  "Connected"
 [71,] "A"  "Connected"
 [72,] "D"  "Connected"
 [73,] "B"  "Connected"
 [74,] "A"  "Connected"
 [75,] "B"  "Connected"
 [76,] "A"  "Connected"
 [77,] "A"  "Connected"
 [78,] "B"  "Connected"
 [79,] "D"  "Connected"
 [80,] "A"  "Connected"
 [81,] "C"  "Connected"
 [82,] "A"  "Connected"
 [83,] "B"  "Connected"
 [84,] "A"  "Connected"
 [85,] "C"  "Connected"
 [86,] "C"  "Connected"
 [87,] "A"  "Connected"
 [88,] "C"  "Connected"
 [89,] "D"  "Connected"
 [90,] "C"  "Connected"
 [91,] "D"  "Connected"
 [92,] "B"  "Connected"
 [93,] "B"  "Connected"
 [94,] "C"  "Connected"
 [95,] "D"  "Connected"
 [96,] "A"  "Connected"
 [97,] "A"  "Connected"
 [98,] "B"  "Connected"
 [99,] "A"  "Connected"
[100,] "C"  "Connected"
[101,] "A"  "Connected"
[102,] "A"  "Connected"
[103,] "B"  "Connected"
[104,] "C"  "Connected"
[105,] "C"  "Connected"
[106,] "A"  "Connected"
[107,] "A"  "Connected"
[108,] "A"  "Connected"
[109,] "B"  "Connected"
[110,] "A"  "Connected"
[111,] "D"  "Connected"
[112,] "D"  "Connected"
[113,] "C"  "Connected"
[114,] "C"  "Connected"
[115,] "A"  "Connected"
[116,] "A"  "Connected"
[117,] "C"  "Connected"
[118,] "B"  "Connected"
[119,] "C"  "Connected"
[120,] "A"  "Connected"
[121,] "C"  "Connected"
[122,] "D"  "Connected"
[123,] "A"  "Connected"
[124,] "A"  "Connected"
[125,] "C"  "Connected"
[126,] "D"  "Connected"
[127,] "A"  "Connected"
[128,] "A"  "Connected"
[129,] "C"  "Connected"
[130,] "B"  "Connected"
[131,] "C"  "Connected"
[132,] "D"  "Connected"
[133,] "A"  "Connected"
[134,] "D"  "Connected"
[135,] "A"  "Connected"
[136,] "C"  "Connected"
[137,] "D"  "Connected"
[138,] "B"  "Connected"
[139,] "D"  "Connected"
[140,] "B"  "Connected"
[141,] "D"  "Connected"
[142,] "C"  "Connected"
[143,] "D"  "Connected"
[144,] "D"  "Connected"
[145,] "D"  "Connected"
[146,] "A"  "Connected"
[147,] "C"  "Connected"
[148,] "B"  "Connected"
[149,] "C"  "Connected"
[150,] "B"  "Connected"
[151,] "A"  "Connected"
[152,] "A"  "Connected"
[153,] "B"  "Connected"
[154,] "B"  "Connected"
[155,] "B"  "Connected"
[156,] "C"  "Connected"
[157,] "B"  "Connected"
[158,] "C"  "Connected"
[159,] "C"  "Connected"
[160,] "B"  "Connected"
[161,] "C"  "Connected"
[162,] "B"  "Connected"
[163,] "A"  "Separate" 
[164,] "C"  "Separate" 
[165,] "B"  "Separate" 
[166,] "C"  "Separate" 
[167,] "A"  "Separate" 
[168,] "D"  "Separate" 
[169,] "D"  "Separate" 
[170,] "B"  "Separate" 
[171,] "B"  "Separate" 
[172,] "A"  "Separate" 
[173,] "D"  "Separate" 
[174,] "B"  "Separate" 
[175,] "B"  "Separate" 
[176,] "A"  "Separate" 
[177,] "A"  "Separate" 
[178,] "C"  "Separate" 
[179,] "C"  "Separate" 
[180,] "A"  "Separate" 
[181,] "A"  "Separate" 
[182,] "C"  "Separate" 
[183,] "C"  "Separate" 
[184,] "D"  "Separate" 
[185,] "A"  "Separate" 
[186,] "A"  "Separate" 
[187,] "C"  "Separate" 
[188,] "C"  "Separate" 
[189,] "B"  "Separate" 
[190,] "A"  "Separate" 
[191,] "C"  "Separate" 
[192,] "C"  "Separate" 
[193,] "D"  "Separate" 
[194,] "C"  "Separate" 
[195,] "D"  "Separate" 
[196,] "A"  "Separate" 
[197,] "D"  "Separate" 
[198,] "C"  "Separate" 
[199,] "D"  "Separate" 
[200,] "C"  "Separate" 
[201,] "D"  "Separate" 
[202,] "C"  "Separate" 
[203,] "C"  "Separate" 
[204,] "C"  "Separate" 
[205,] "C"  "Separate" 
[206,] "C"  "Separate" 
[207,] "D"  "Separate" 
[208,] "B"  "Separate" 
[209,] "A"  "Separate" 
[210,] "B"  "Separate" 
[211,] "A"  "Separate" 
[212,] "C"  "Separate" 
[213,] "A"  "Separate" 
[214,] "D"  "Separate" 
[215,] "C"  "Separate" 
[216,] "A"  "Separate" 
[217,] "C"  "Separate" 
[218,] "C"  "Separate" 
[219,] "B"  "Separate" 
[220,] "B"  "Separate" 
[221,] "B"  "Separate" 
[222,] "B"  "Separate" 
[223,] "D"  "Separate" 
[224,] "B"  "Separate" 
[225,] "B"  "Separate" 
[226,] "B"  "Separate" 
[227,] "D"  "Separate" 
[228,] "A"  "Separate" 
[229,] "B"  "Separate" 
[230,] "D"  "Separate" 
[231,] "A"  "Separate" 
[232,] "A"  "Separate" 
[233,] "B"  "Separate" 
[234,] "A"  "Separate" 
[235,] "A"  "Separate" 
[236,] "A"  "Separate" 
[237,] "D"  "Separate" 
[238,] "D"  "Separate" 
[239,] "A"  "Separate" 
[240,] "D"  "Separate" 
[241,] "D"  "Separate" 
[242,] "D"  "Separate" 
[243,] "B"  "Separate" 
[244,] "A"  "Separate" 
[245,] "A"  "Separate" 
[246,] "C"  "Separate" 
[247,] "B"  "Separate" 
[248,] "D"  "Separate" 
[249,] "A"  "Separate" 
[250,] "B"  "Separate" 
[251,] "C"  "Separate" 
[252,] "C"  "Separate" 
[253,] "B"  "Separate" 
[254,] "C"  "Separate" 
[255,] "A"  "Separate" 
[256,] "D"  "Separate" 
[257,] "D"  "Separate" 
[258,] "B"  "Separate" 
[259,] "B"  "Separate" 
[260,] "D"  "Separate" 
[261,] "B"  "Separate" 
[262,] "B"  "Separate" 
[263,] "B"  "Separate" 
[264,] "B"  "Separate" 
[265,] "A"  "Separate" 
[266,] "D"  "Separate" 
[267,] "A"  "Separate" 
[268,] "C"  "Separate" 
[269,] "B"  "Separate" 
[270,] "A"  "Separate" 
[271,] "B"  "Separate" 
[272,] "A"  "Separate" 
[273,] "B"  "Separate" 
[274,] "C"  "Separate" 
[275,] "A"  "Separate" 
[276,] "C"  "Separate" 
[277,] "B"  "Separate" 
[278,] "C"  "Separate" 
[279,] "A"  "Separate" 
[280,] "A"  "Separate" 
[281,] "B"  "Separate" 
[282,] "B"  "Separate" 
[283,] "A"  "Separate" 
[284,] "D"  "Separate" 
[285,] "A"  "Separate" 
[286,] "A"  "Separate" 
[287,] "D"  "Separate" 
[288,] "C"  "Separate" 
[289,] "C"  "Separate" 
[290,] "A"  "Separate" 
[291,] "B"  "Separate" 
[292,] "C"  "Separate" 
[293,] "C"  "Separate" 
[294,] "C"  "Separate" 
[295,] "A"  "Separate" 
[296,] "D"  "Separate" 
[297,] "A"  "Separate" 
[298,] "D"  "Separate" 
[299,] "D"  "Separate" 
[300,] "B"  "Separate" 
[301,] "B"  "Separate" 
[302,] "B"  "Separate" 
[303,] "B"  "Separate" 
[304,] "B"  "Separate" 
[305,] "B"  "Separate" 
[306,] "B"  "Separate" 
[307,] "D"  "Separate" 
[308,] "D"  "Separate" 
[309,] "D"  "Separate" 
[310,] "B"  "Separate" 
[311,] "D"  "Separate" 
[312,] "C"  "Separate" 
[313,] "A"  "Separate" 
[314,] "A"  "Separate" 
[315,] "A"  "Separate" 
[316,] "A"  "Separate" 
[317,] "B"  "Separate" 
[318,] "D"  "Separate" 
[319,] "C"  "Separate" 
[320,] "A"  "Separate" 
[321,] "B"  "Separate" 
[322,] "C"  "Separate" 
[323,] "B"  "Separate" 
[324,] "B"  "Separate" 
> (table1 <- table(z[,cat1],z[,cat2]))
   
    Connected Separate
  A        54       44
  B        43       46
  C        37       38
  D        28       34
> (V1<-dimnames(y)[[1]][cat1])
[1] "Score"
> (V2<-dimnames(y)[[1]][cat2])
[1] "Behandeling"
> postscript(file="/var/wessaorg/rcomp/tmp/1smb21321285065.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T)
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a, ' ', 1,TRUE)
> for(nc in 1:ncol(table1)){
+ a<-table.element(a, colnames(table1)[nc], 1, TRUE)
+ }
> a<-table.row.end(a)
> for(nr in 1:nrow(table1) ){
+ a<-table.element(a, rownames(table1)[nr], 1, TRUE)
+ for(nc in 1:ncol(table1) ){
+ a<-table.element(a, table1[nr, nc], 1, FALSE)
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/2w24o1321285065.tab") 
> (cst<-chisq.test(table1, simulate.p.value=simulate.p.value) )

	Pearson's Chi-squared test

data:  table1 
X-squared = 1.7155, df = 3, p-value = 0.6335

> if (par3 == 'McNemar Chi-Squared') {
+ (cst <- mcnemar.test(table1))
+ }
> if (par3=='Fisher Exact Test') {
+ (cst <- fisher.test(table1))
+ }
> if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) {
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a, ' ', 1,TRUE)
+ for(nc in 1:ncol(table1)){
+ a<-table.element(a, colnames(table1)[nc], 1, TRUE)
+ }
+ a<-table.row.end(a)
+ for(nr in 1:nrow(table1) ){
+ a<-table.element(a, rownames(table1)[nr], 1, TRUE)
+ for(nc in 1:ncol(table1) ){
+ a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE)
+ }
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/3uvcq1321285065.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Statistical Results',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a, cst$method, 2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE)
> if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE)
> if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE)
> if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE)
> if (par3=='Fisher Exact Test') {
+ if ((ncol(table1) == 2) & (nrow(table1) == 2)) {
+ a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE)
+ } else {
+ a<-table.element(a, '--', 1,FALSE)
+ }
+ } else {
+ a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE)
+ }
> a<-table.row.end(a)
> if(!simulate.p.value){
+ if(par3!='Fisher Exact Test') {
+ a<-table.row.start(a)
+ a<-table.element(a, 'Degrees of Freedom', 1, TRUE)
+ a<-table.element(a, cst$parameter, 1,FALSE)
+ a<-table.row.end(a)
+ }
+ }
> a<-table.row.start(a)
> a<-table.element(a, 'P value', 1, TRUE)
> a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE)
> a<-table.row.end(a)
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/451v51321285065.tab") 
> 
> try(system("convert tmp/1smb21321285065.ps tmp/1smb21321285065.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.119   0.090   1.203