R version 2.12.0 (2010-10-15) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i486-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- array(list('A' + ,'Connected' + ,'A' + ,'Connected' + ,'D' + ,'Connected' + ,'D' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'D' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'B' + ,'Connected' + ,'D' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + 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,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'C' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'D' + ,'Connected' + ,'D' + ,'Connected' + ,'C' + ,'Connected' + ,'C' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'B' + ,'Connected' + ,'D' + ,'Connected' + ,'B' + ,'Connected' + ,'D' + ,'Connected' + ,'C' + ,'Connected' + ,'D' + ,'Connected' + ,'D' + ,'Connected' + ,'D' + ,'Connected' + ,'A' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'A' + ,'Connected' + ,'A' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'C' + ,'Connected' + ,'B' + ,'Connected' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'C' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'D' + ,'Happiness' + ,'B' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'B' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'A' + ,'Happiness' + ,'D' + ,'Happiness' + ,'D' + ,'Happiness' + ,'C' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Happiness' + ,'A' + ,'Happiness' + ,'C' + ,'Happiness' + ,'D' + ,'Happiness' + ,'C' + ,'Happiness' + ,'B' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'D' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'D' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'D' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'D' + ,'Depression' + ,'C' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'D' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'C' + ,'Depression' + ,'D' + ,'Depression' + ,'D' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'A' + ,'Depression' + ,'D' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'C' + ,'Depression' + ,'D' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'A' + ,'Depression' + ,'C' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + ,'Depression' + ,'B' + ,'Depression' + ,'D' + ,'Depression' + ,'A' + 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+ ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'A' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'D' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'D' + ,'Separate' + ,'C' + ,'Separate' + ,'A' + ,'Separate' + ,'B' + ,'Separate' + ,'C' + ,'Separate' + ,'B' + ,'Separate' + ,'B' + ,'Separate') + ,dim=c(2 + ,648) + ,dimnames=list(c('Score' + ,'Behandeling') + ,1:648)) > y <- array(NA,dim=c(2,648),dimnames=list(c('Score','Behandeling'),1:648)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } There were 50 or more warnings (use warnings() to see the first 50) > par3 = 'Pearson Chi-Squared' > par2 = '1' > par1 = '2' > main = 'Association Plot' > library(vcd) Loading required package: MASS Loading required package: grid Loading required package: colorspace > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > simulate.p.value=FALSE > if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE > x <- t(x) > (z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,])))) [,1] [,2] [1,] "A" "Connected" [2,] "A" "Connected" [3,] "D" "Connected" [4,] "D" "Connected" [5,] "B" "Connected" [6,] "B" "Connected" [7,] "A" "Connected" [8,] "B" "Connected" [9,] "B" "Connected" [10,] "A" "Connected" [11,] "A" "Connected" [12,] "B" "Connected" [13,] "A" "Connected" [14,] "A" "Connected" [15,] "C" "Connected" [16,] "C" "Connected" [17,] "B" "Connected" [18,] "A" "Connected" [19,] "A" "Connected" [20,] "C" "Connected" [21,] "C" "Connected" [22,] "D" "Connected" [23,] "A" "Connected" [24,] "A" "Connected" [25,] "A" "Connected" [26,] "A" "Connected" [27,] "B" "Connected" [28,] "C" "Connected" [29,] "C" "Connected" [30,] "B" "Connected" [31,] "D" "Connected" [32,] "D" "Connected" [33,] "A" "Connected" [34,] "B" "Connected" [35,] "B" "Connected" [36,] "C" "Connected" [37,] "D" "Connected" [38,] "B" "Connected" [39,] "D" "Connected" [40,] "B" "Connected" [41,] "A" "Connected" [42,] "B" "Connected" [43,] "A" "Connected" [44,] "B" "Connected" [45,] "A" "Connected" [46,] "A" "Connected" [47,] "A" "Connected" [48,] "C" "Connected" [49,] "B" "Connected" [50,] "A" "Connected" [51,] "C" "Connected" [52,] "C" "Connected" [53,] "C" "Connected" [54,] "B" "Connected" [55,] "C" "Connected" [56,] "A" "Connected" [57,] "A" "Connected" [58,] "D" "Connected" [59,] "A" "Connected" [60,] "B" "Connected" [61,] "D" "Connected" [62,] "A" "Connected" [63,] "B" "Connected" [64,] "D" "Connected" [65,] "B" "Connected" [66,] "B" "Connected" [67,] "B" "Connected" [68,] "D" "Connected" [69,] "A" "Connected" [70,] "B" "Connected" [71,] "A" "Connected" [72,] "D" "Connected" [73,] "B" "Connected" [74,] "A" "Connected" [75,] "B" "Connected" [76,] "A" "Connected" [77,] "A" "Connected" [78,] "B" "Connected" [79,] "D" "Connected" [80,] "A" "Connected" [81,] "C" "Connected" [82,] "A" "Connected" [83,] "B" "Connected" [84,] "A" "Connected" [85,] "C" "Connected" [86,] "C" "Connected" [87,] "A" "Connected" [88,] "C" "Connected" [89,] "D" "Connected" [90,] "C" "Connected" [91,] "D" "Connected" [92,] "B" "Connected" [93,] "B" "Connected" [94,] "C" "Connected" [95,] "D" "Connected" [96,] "A" "Connected" [97,] "A" "Connected" [98,] "B" "Connected" [99,] "A" "Connected" [100,] "C" "Connected" [101,] "A" "Connected" [102,] "A" "Connected" [103,] "B" "Connected" [104,] "C" "Connected" [105,] "C" "Connected" [106,] "A" "Connected" [107,] "A" "Connected" [108,] "A" "Connected" [109,] "B" "Connected" [110,] "A" "Connected" [111,] "D" "Connected" [112,] "D" "Connected" [113,] "C" "Connected" [114,] "C" "Connected" [115,] "A" "Connected" [116,] "A" "Connected" [117,] "C" "Connected" [118,] "B" "Connected" [119,] "C" "Connected" [120,] "A" "Connected" [121,] "C" "Connected" [122,] "D" "Connected" [123,] "A" "Connected" [124,] "A" "Connected" [125,] "C" "Connected" [126,] "D" "Connected" [127,] "A" "Connected" [128,] "A" "Connected" [129,] "C" "Connected" [130,] "B" "Connected" [131,] "C" "Connected" [132,] "D" "Connected" [133,] "A" "Connected" [134,] "D" "Connected" [135,] "A" "Connected" [136,] "C" "Connected" [137,] "D" "Connected" [138,] "B" "Connected" [139,] "D" "Connected" [140,] "B" "Connected" [141,] "D" "Connected" [142,] "C" "Connected" [143,] "D" "Connected" [144,] "D" "Connected" [145,] "D" "Connected" [146,] "A" "Connected" [147,] "C" "Connected" [148,] "B" "Connected" [149,] "C" "Connected" [150,] "B" "Connected" [151,] "A" "Connected" [152,] "A" "Connected" [153,] "B" "Connected" [154,] "B" "Connected" [155,] "B" "Connected" [156,] "C" "Connected" [157,] "B" "Connected" [158,] "C" "Connected" [159,] "C" "Connected" [160,] "B" "Connected" [161,] "C" "Connected" [162,] "B" "Connected" [163,] "B" "Happiness" [164,] "A" "Happiness" [165,] "D" "Happiness" [166,] "D" "Happiness" [167,] "A" "Happiness" [168,] "A" "Happiness" [169,] "B" "Happiness" [170,] "B" "Happiness" [171,] "B" "Happiness" [172,] "B" "Happiness" [173,] "A" "Happiness" [174,] "A" "Happiness" [175,] "D" "Happiness" [176,] "A" "Happiness" [177,] "A" "Happiness" [178,] "B" "Happiness" [179,] "B" "Happiness" [180,] "A" "Happiness" [181,] "B" "Happiness" [182,] "A" "Happiness" [183,] "A" "Happiness" [184,] "D" "Happiness" [185,] "B" "Happiness" [186,] "D" "Happiness" [187,] "A" "Happiness" [188,] "D" "Happiness" [189,] "A" "Happiness" [190,] "B" "Happiness" [191,] "B" "Happiness" [192,] "D" "Happiness" [193,] "A" "Happiness" [194,] "C" "Happiness" [195,] "A" "Happiness" [196,] "B" "Happiness" [197,] "B" "Happiness" [198,] "A" "Happiness" [199,] "D" "Happiness" [200,] "B" "Happiness" [201,] "A" "Happiness" [202,] "C" "Happiness" [203,] "B" "Happiness" [204,] "A" "Happiness" [205,] "A" "Happiness" [206,] "D" "Happiness" [207,] "D" "Happiness" [208,] "D" "Happiness" [209,] "B" "Happiness" [210,] "B" "Happiness" [211,] "A" "Happiness" [212,] "C" "Happiness" [213,] "A" "Happiness" [214,] "B" "Happiness" [215,] "D" "Happiness" [216,] "D" "Happiness" [217,] "D" "Happiness" [218,] "B" "Happiness" [219,] "A" "Happiness" [220,] "B" "Happiness" [221,] "D" "Happiness" [222,] "D" "Happiness" [223,] "D" "Happiness" [224,] "C" "Happiness" [225,] "D" "Happiness" [226,] "B" "Happiness" [227,] "B" "Happiness" [228,] "D" "Happiness" [229,] "D" "Happiness" [230,] "D" "Happiness" [231,] "B" "Happiness" [232,] "B" "Happiness" [233,] "B" "Happiness" [234,] "A" "Happiness" [235,] "B" "Happiness" [236,] "B" "Happiness" [237,] "C" "Happiness" [238,] "D" "Happiness" [239,] "A" "Happiness" [240,] "C" "Happiness" [241,] "B" "Happiness" [242,] "C" "Happiness" [243,] "B" "Happiness" [244,] "A" "Happiness" [245,] "B" "Happiness" [246,] "A" "Happiness" [247,] "B" "Happiness" [248,] "B" "Happiness" [249,] "B" "Happiness" [250,] "B" "Happiness" [251,] "C" "Happiness" [252,] "D" "Happiness" [253,] "A" "Happiness" [254,] "C" "Happiness" [255,] "B" "Happiness" [256,] "B" "Happiness" [257,] "C" "Happiness" [258,] "A" "Happiness" [259,] "D" "Happiness" [260,] "B" "Happiness" [261,] "A" "Happiness" [262,] "B" "Happiness" [263,] "A" "Happiness" [264,] "D" "Happiness" [265,] "A" "Happiness" [266,] "D" "Happiness" [267,] "B" "Happiness" [268,] "D" "Happiness" [269,] "A" "Happiness" [270,] "B" "Happiness" [271,] "D" "Happiness" [272,] "D" "Happiness" [273,] "B" "Happiness" [274,] "D" "Happiness" [275,] "C" "Happiness" [276,] "B" "Happiness" [277,] "A" "Happiness" [278,] "A" "Happiness" [279,] "B" "Happiness" [280,] "B" "Happiness" [281,] "B" "Happiness" [282,] "B" "Happiness" [283,] "D" "Happiness" [284,] "B" "Happiness" [285,] "B" "Happiness" [286,] "B" "Happiness" [287,] "B" "Happiness" [288,] "C" "Happiness" [289,] "A" "Happiness" [290,] "A" "Happiness" [291,] "A" "Happiness" [292,] "B" "Happiness" [293,] "C" "Happiness" [294,] "D" "Happiness" [295,] "B" "Happiness" [296,] "B" "Happiness" [297,] "B" "Happiness" [298,] "A" "Happiness" [299,] "D" "Happiness" [300,] "B" "Happiness" [301,] "D" "Happiness" [302,] "B" "Happiness" [303,] "C" "Happiness" [304,] "B" "Happiness" [305,] "A" "Happiness" [306,] "B" "Happiness" [307,] "B" "Happiness" [308,] "A" "Happiness" [309,] "A" "Happiness" [310,] "D" "Happiness" [311,] "D" "Happiness" [312,] "D" "Happiness" [313,] "A" "Happiness" [314,] "C" "Happiness" [315,] "A" "Happiness" [316,] "D" "Happiness" [317,] "D" "Happiness" [318,] "C" "Happiness" [319,] "C" "Happiness" [320,] "B" "Happiness" [321,] "A" "Happiness" [322,] "C" "Happiness" [323,] "D" "Happiness" [324,] "C" "Happiness" [325,] "B" "Depression" [326,] "C" "Depression" [327,] "A" "Depression" [328,] "B" "Depression" [329,] "A" "Depression" [330,] "B" "Depression" [331,] "A" "Depression" [332,] "C" "Depression" [333,] "D" "Depression" [334,] "B" "Depression" [335,] "D" "Depression" [336,] "D" "Depression" [337,] "A" "Depression" [338,] "A" "Depression" [339,] "D" "Depression" [340,] "A" "Depression" [341,] "A" "Depression" [342,] "C" "Depression" [343,] "D" "Depression" [344,] "B" "Depression" [345,] "D" "Depression" [346,] "A" "Depression" [347,] "B" "Depression" [348,] "A" "Depression" [349,] "C" "Depression" [350,] "D" "Depression" [351,] "C" "Depression" [352,] "A" "Depression" [353,] "A" "Depression" [354,] "B" "Depression" [355,] "D" "Depression" [356,] "A" "Depression" [357,] "D" "Depression" [358,] "C" "Depression" [359,] "B" "Depression" [360,] "D" "Depression" [361,] "A" "Depression" [362,] "B" "Depression" [363,] "D" "Depression" [364,] "D" "Depression" [365,] "D" "Depression" [366,] "A" "Depression" [367,] "D" "Depression" [368,] "A" "Depression" [369,] "C" "Depression" [370,] "B" "Depression" [371,] "D" "Depression" [372,] "C" "Depression" [373,] "A" "Depression" [374,] "C" "Depression" [375,] "D" "Depression" [376,] "A" "Depression" [377,] "A" "Depression" [378,] "A" "Depression" [379,] "C" "Depression" [380,] "B" "Depression" [381,] "B" "Depression" [382,] "D" "Depression" [383,] "D" "Depression" [384,] "A" "Depression" [385,] "A" "Depression" [386,] "B" "Depression" [387,] "B" "Depression" [388,] "A" "Depression" [389,] "B" "Depression" [390,] "C" "Depression" [391,] "A" "Depression" [392,] "B" "Depression" [393,] "B" "Depression" [394,] "A" "Depression" [395,] "B" "Depression" [396,] "A" "Depression" [397,] "B" "Depression" [398,] "D" "Depression" [399,] "C" "Depression" [400,] "A" "Depression" [401,] "B" "Depression" [402,] "A" "Depression" [403,] "B" "Depression" [404,] "D" "Depression" [405,] "C" "Depression" [406,] "D" "Depression" [407,] "D" "Depression" [408,] "B" "Depression" [409,] "B" "Depression" [410,] "B" "Depression" [411,] "B" "Depression" [412,] "B" "Depression" [413,] "A" "Depression" [414,] "A" "Depression" [415,] "B" "Depression" [416,] "A" "Depression" [417,] "B" "Depression" [418,] "A" "Depression" [419,] "D" "Depression" [420,] "C" "Depression" [421,] "A" "Depression" [422,] "C" "Depression" [423,] "C" "Depression" [424,] "D" "Depression" [425,] "D" "Depression" [426,] "A" "Depression" [427,] "B" "Depression" [428,] "C" "Depression" [429,] "A" "Depression" [430,] "A" "Depression" [431,] "C" "Depression" [432,] "A" "Depression" [433,] "A" "Depression" [434,] "A" "Depression" [435,] "A" "Depression" [436,] "A" "Depression" [437,] "C" "Depression" [438,] "A" "Depression" [439,] "B" "Depression" [440,] "D" "Depression" [441,] "A" "Depression" [442,] "B" "Depression" [443,] "D" "Depression" [444,] "A" "Depression" [445,] "A" "Depression" [446,] "A" "Depression" [447,] "C" "Depression" [448,] "D" "Depression" [449,] "C" "Depression" [450,] "C" "Depression" [451,] "D" "Depression" [452,] "D" "Depression" [453,] "C" "Depression" [454,] "B" "Depression" [455,] "C" "Depression" [456,] "A" "Depression" [457,] "D" "Depression" [458,] "A" "Depression" [459,] "B" "Depression" [460,] "A" "Depression" [461,] "A" "Depression" [462,] "A" "Depression" [463,] "A" "Depression" [464,] "C" "Depression" [465,] "B" "Depression" [466,] "D" "Depression" [467,] "A" "Depression" [468,] "B" "Depression" [469,] "B" "Depression" [470,] "C" "Depression" [471,] "B" "Depression" [472,] "B" "Depression" [473,] "C" "Depression" [474,] "A" "Depression" [475,] "B" "Depression" [476,] "A" "Depression" [477,] "D" "Depression" [478,] "B" "Depression" [479,] "A" "Depression" [480,] "A" "Depression" [481,] "A" "Depression" [482,] "A" "Depression" [483,] "C" "Depression" [484,] "D" "Depression" [485,] "A" "Depression" [486,] "A" "Depression" [487,] "A" "Separate" [488,] "C" "Separate" [489,] "B" "Separate" [490,] "C" "Separate" [491,] "A" "Separate" [492,] "D" "Separate" [493,] "D" "Separate" [494,] "B" "Separate" [495,] "B" "Separate" [496,] "A" "Separate" [497,] "D" "Separate" [498,] "B" "Separate" [499,] "B" "Separate" [500,] "A" "Separate" [501,] "A" "Separate" [502,] "C" "Separate" [503,] "C" "Separate" [504,] "A" "Separate" [505,] "A" "Separate" [506,] "C" "Separate" [507,] "C" "Separate" [508,] "D" "Separate" [509,] "A" "Separate" [510,] "A" "Separate" [511,] "C" "Separate" [512,] "C" "Separate" [513,] "B" "Separate" [514,] "A" "Separate" [515,] "C" "Separate" [516,] "C" "Separate" [517,] "D" "Separate" [518,] "C" "Separate" [519,] "D" "Separate" [520,] "A" "Separate" [521,] "D" "Separate" [522,] "C" "Separate" [523,] "D" "Separate" [524,] "C" "Separate" [525,] "D" "Separate" [526,] "C" "Separate" [527,] "C" "Separate" [528,] "C" "Separate" [529,] "C" "Separate" [530,] "C" "Separate" [531,] "D" "Separate" [532,] "B" "Separate" [533,] "A" "Separate" [534,] "B" "Separate" [535,] "A" "Separate" [536,] "C" "Separate" [537,] "A" "Separate" [538,] "D" "Separate" [539,] "C" "Separate" [540,] "A" "Separate" [541,] "C" "Separate" [542,] "C" "Separate" [543,] "B" "Separate" [544,] "B" "Separate" [545,] "B" "Separate" [546,] "B" "Separate" [547,] "D" "Separate" [548,] "B" "Separate" [549,] "B" "Separate" [550,] "B" "Separate" [551,] "D" "Separate" [552,] "A" "Separate" [553,] "B" "Separate" [554,] "D" "Separate" [555,] "A" "Separate" [556,] "A" "Separate" [557,] "B" "Separate" [558,] "A" "Separate" [559,] "A" "Separate" [560,] "A" "Separate" [561,] "D" "Separate" [562,] "D" "Separate" [563,] "A" "Separate" [564,] "D" "Separate" [565,] "D" "Separate" [566,] "D" "Separate" [567,] "B" "Separate" [568,] "A" "Separate" [569,] "A" "Separate" [570,] "C" "Separate" [571,] "B" "Separate" [572,] "D" "Separate" [573,] "A" "Separate" [574,] "B" "Separate" [575,] "C" "Separate" [576,] "C" "Separate" [577,] "B" "Separate" [578,] "C" "Separate" [579,] "A" "Separate" [580,] "D" "Separate" [581,] "D" "Separate" [582,] "B" "Separate" [583,] "B" "Separate" [584,] "D" "Separate" [585,] "B" "Separate" [586,] "B" "Separate" [587,] "B" "Separate" [588,] "B" "Separate" [589,] "A" "Separate" [590,] "D" "Separate" [591,] "A" "Separate" [592,] "C" "Separate" [593,] "B" "Separate" [594,] "A" "Separate" [595,] "B" "Separate" [596,] "A" "Separate" [597,] "B" "Separate" [598,] "C" "Separate" [599,] "A" "Separate" [600,] "C" "Separate" [601,] "B" "Separate" [602,] "C" "Separate" [603,] "A" "Separate" [604,] "A" "Separate" [605,] "B" "Separate" [606,] "B" "Separate" [607,] "A" "Separate" [608,] "D" "Separate" [609,] "A" "Separate" [610,] "A" "Separate" [611,] "D" "Separate" [612,] "C" "Separate" [613,] "C" "Separate" [614,] "A" "Separate" [615,] "B" "Separate" [616,] "C" "Separate" [617,] "C" "Separate" [618,] "C" "Separate" [619,] "A" "Separate" [620,] "D" "Separate" [621,] "A" "Separate" [622,] "D" "Separate" [623,] "D" "Separate" [624,] "B" "Separate" [625,] "B" "Separate" [626,] "B" "Separate" [627,] "B" "Separate" [628,] "B" "Separate" [629,] "B" "Separate" [630,] "B" "Separate" [631,] "D" "Separate" [632,] "D" "Separate" [633,] "D" "Separate" [634,] "B" "Separate" [635,] "D" "Separate" [636,] "C" "Separate" [637,] "A" "Separate" [638,] "A" "Separate" [639,] "A" "Separate" [640,] "A" "Separate" [641,] "B" "Separate" [642,] "D" "Separate" [643,] "C" "Separate" [644,] "A" "Separate" [645,] "B" "Separate" [646,] "C" "Separate" [647,] "B" "Separate" [648,] "B" "Separate" > (table1 <- table(z[,cat1],z[,cat2])) A B C D Connected 54 43 37 28 Depression 60 40 28 34 Happiness 43 60 19 40 Separate 44 46 38 34 > (V1<-dimnames(y)[[1]][cat1]) [1] "Behandeling" > (V2<-dimnames(y)[[1]][cat2]) [1] "Score" > postscript(file="/var/www/rcomp/tmp/171ag1321287611.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T) > dev.off() null device 1 > > #Note: the /var/www/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ', 1,TRUE) > for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } > a<-table.row.end(a) > for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, table1[nr, nc], 1, FALSE) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/www/rcomp/tmp/2377d1321287611.tab") > (cst<-chisq.test(table1, simulate.p.value=simulate.p.value) ) Pearson's Chi-squared test data: table1 X-squared = 18.8514, df = 9, p-value = 0.02649 > if (par3 == 'McNemar Chi-Squared') { + (cst <- mcnemar.test(table1)) + } > if (par3=='Fisher Exact Test') { + (cst <- fisher.test(table1)) + } > if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a, ' ', 1,TRUE) + for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } + a<-table.row.end(a) + for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/3ej7g1321287611.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Statistical Results',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, cst$method, 2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE) > if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE) > if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE) > if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE) > if (par3=='Fisher Exact Test') { + if ((ncol(table1) == 2) & (nrow(table1) == 2)) { + a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE) + } else { + a<-table.element(a, '--', 1,FALSE) + } + } else { + a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE) + } > a<-table.row.end(a) > if(!simulate.p.value){ + if(par3!='Fisher Exact Test') { + a<-table.row.start(a) + a<-table.element(a, 'Degrees of Freedom', 1, TRUE) + a<-table.element(a, cst$parameter, 1,FALSE) + a<-table.row.end(a) + } + } > a<-table.row.start(a) > a<-table.element(a, 'P value', 1, TRUE) > a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/www/rcomp/tmp/4gowa1321287611.tab") > > try(system("convert tmp/171ag1321287611.ps tmp/171ag1321287611.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.910 0.060 1.947