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Type 'q()' to quit R. > x <- array(list(6,1,8,3,8,3,7,3,5,1,7,2,8,3,9,3,9,2,3,1,9,1,7,3,9,3,8,3,6,1,7,3,8,3,9,3,7,2,6,2,8,1,7,1,8,3,9,1,9,1,7,3,4,1,7,2,7,3,9,2,7,2,9,3,10,1,5,3,6,3,9,1,9,2,8,1,6,1,6,2,5,1,8,1,8,3,5,2,6,2,9,1,4,1,8,1,9,2,7,3,7,3,6,3,9,3,9,2,8,2,6,3,10,3,8,2,7,2,8,3,3,2,8,3,10,3,7,2,5,2,10,3,5,3,8,2,9,1,6,2,9,2,8,2,5,2,8,3,3,2,7,3,8,1,10,3,9,3,10,1,9,1,8,2,8,1,8,3,9,1,4,3,6,2,7,3,4,1,9,1,7,2,8,3,8,3,7,1,7,2,9,2,8,3,8,3,9,1,9,3,10,3,7,3,8,2,5,3,9,3,8,3,7,3,8,1,8,3,7,1,6,3,7,3,7,3,6,2,6,3,7,2,9,3,6,2,10,2,4,2,8,3,7,3,5,3,9,3,8,2,9,1,8,3,8,3,9,3,8,2,9,1,7,3,6,3,8,3,6,2,5,3,3,2,6,3,8,3,7,2,8,3,6,3,9,3,9,3,10,1,7,3,5,2,8,3,9,3,8,1,4,3),dim=c(2,151),dimnames=list(c('MC30VRB','MOMAGE'),1:151)) > y <- array(NA,dim=c(2,151),dimnames=list(c('MC30VRB','MOMAGE'),1:151)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = 'TRUE' > par2 = '2' > par1 = '1' > ylab = 'Y Variable Name' > xlab = 'X Variable Name' > main = 'Title Goes Here' > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > intercept<-as.logical(par3) > x <- t(x) > x1<-as.numeric(x[,cat1]) > f1<-as.character(x[,cat2]) > xdf<-data.frame(x1,f1) > (V1<-dimnames(y)[[1]][cat1]) [1] "MC30VRB" > (V2<-dimnames(y)[[1]][cat2]) [1] "MOMAGE" > names(xdf)<-c('Response', 'Treatment') > if(intercept == FALSE) (lmxdf<-lm(Response ~ Treatment - 1, data = xdf) ) else (lmxdf<-lm(Response ~ Treatment, data = xdf) ) Call: lm(formula = Response ~ Treatment, data = xdf) Coefficients: (Intercept) Treatment2 Treatment3 7.60000 -0.74286 -0.01892 > (aov.xdf<-aov(lmxdf) ) Call: aov(formula = lmxdf) Terms: Treatment Residuals Sum of Squares 16.1655 395.5564 Deg. of Freedom 2 148 Residual standard error: 1.634833 Estimated effects may be unbalanced > (anova.xdf<-anova(lmxdf) ) Analysis of Variance Table Response: Response Df Sum Sq Mean Sq F value Pr(>F) Treatment 2 16.17 8.0827 3.0242 0.05161 . Residuals 148 395.56 2.6727 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ANOVA Model', length(lmxdf$coefficients)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, paste(V1, ' ~ ', V2), length(lmxdf$coefficients)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'means',,TRUE) > for(i in 1:length(lmxdf$coefficients)){ + a<-table.element(a, round(lmxdf$coefficients[i], digits=3),,FALSE) + } > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/1xmhg1322136490.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ANOVA Statistics', 5+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ',,TRUE) > a<-table.element(a, 'Df',,FALSE) > a<-table.element(a, 'Sum Sq',,FALSE) > a<-table.element(a, 'Mean Sq',,FALSE) > a<-table.element(a, 'F value',,FALSE) > a<-table.element(a, 'Pr(>F)',,FALSE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, V2,,TRUE) > a<-table.element(a, anova.xdf$Df[1],,FALSE) > a<-table.element(a, round(anova.xdf$'Sum Sq'[1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Mean Sq'[1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'F value'[1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Pr(>F)'[1], digits=3),,FALSE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'Residuals',,TRUE) > a<-table.element(a, anova.xdf$Df[2],,FALSE) > a<-table.element(a, round(anova.xdf$'Sum Sq'[2], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Mean Sq'[2], digits=3),,FALSE) > a<-table.element(a, ' ',,FALSE) > a<-table.element(a, ' ',,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/2c7da1322136490.tab") > postscript(file="/var/wessaorg/rcomp/tmp/3km8s1322136490.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(Response ~ Treatment, data=xdf, xlab=V2, ylab=V1) > dev.off() null device 1 > if(intercept==TRUE){ + thsd<-TukeyHSD(aov.xdf) + postscript(file="/var/wessaorg/rcomp/tmp/4eiaf1322136490.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + plot(thsd) + dev.off() + } null device 1 > if(intercept==TRUE){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Tukey Honest Significant Difference Comparisons', 5,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a, ' ', 1, TRUE) + for(i in 1:4){ + a<-table.element(a,colnames(thsd[[1]])[i], 1, TRUE) + } + a<-table.row.end(a) + for(i in 1:length(rownames(thsd[[1]]))){ + a<-table.row.start(a) + a<-table.element(a,rownames(thsd[[1]])[i], 1, TRUE) + for(j in 1:4){ + a<-table.element(a,round(thsd[[1]][i,j], digits=3), 1, FALSE) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/5o0f91322136490.tab") + } > if(intercept==FALSE){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'TukeyHSD Message', 1,TRUE) + a<-table.row.end(a) + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Must Include Intercept to use Tukey Test ', 1, FALSE) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/61xeh1322136490.tab") + } > library(car) Loading required package: MASS Loading required package: nnet Loading required package: survival Loading required package: splines > lt.lmxdf<-levene.test(lmxdf) Warning message: 'levene.test' is deprecated. Use 'leveneTest' instead. See help("Deprecated") and help("car-deprecated"). > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Levenes Test for Homogeneity of Variance', 4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,' ', 1, TRUE) > for (i in 1:3){ + a<-table.element(a,names(lt.lmxdf)[i], 1, FALSE) + } > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Group', 1, TRUE) > for (i in 1:3){ + a<-table.element(a,round(lt.lmxdf[[i]][1], digits=3), 1, FALSE) + } > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,' ', 1, TRUE) > a<-table.element(a,lt.lmxdf[[1]][2], 1, FALSE) > a<-table.element(a,' ', 1, FALSE) > a<-table.element(a,' ', 1, FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/7j1dr1322136490.tab") > > try(system("convert tmp/3km8s1322136490.ps tmp/3km8s1322136490.png",intern=TRUE)) character(0) > try(system("convert tmp/4eiaf1322136490.ps tmp/4eiaf1322136490.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.827 0.118 0.982