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Type 'q()' to quit R. > x <- array(list(88,1,94,2,90,2,73,2,68,1,80,2,86,2,86,3,91,3,79,1,96,3,92,2,72,3,96,2,70,1,86,2,87,2,88,3,79,2,90,1,95,2,85,2,90,2,115,3,84,3,79,2,94,1,97,2,86,2,111,3,87,2,98,3,87,3,68,1,88,1,82,3,111,3,75,2,94,1,95,1,80,1,95,2,68,2,94,1,88,1,84,3,101,1,98,2,78,3,109,2,102,2,81,1,97,3,75,3,97,2,101,1,101,3,95,2,95,2,95,2,90,1,107,2,92,3,86,2,70,1,95,3,96,1,91,2,87,3,92,1,97,3,102,2,91,1,68,2,88,1,97,2,90,2,101,3,94,3,101,3,109,3,100,2,103,2,94,2,97,3,85,1,75,1,77,2,87,1,78,3,108,2,97,2,106,2,107,2,95,2,107,3,115,2,101,2,85,3,90,3,115,3,95,2,97,2,112,1,97,3,77,2,90,2,94,2,103,2,77,2,98,1,90,2,111,2,77,1,88,1,75,2,92,3,78,1,106,3,80,1,87,2,92,2,86,1,85,3,90,2,101,3,94,2,86,2,86,3,90,2,75,3,86,2,91,1,97,2,91,1,70,1,98,1,96,1,95,2,100,2,95,2,97,1,97,3,92,3,115,3,88,2,87,1,100,2,98,3,102,2,96,1),dim=c(2,151),dimnames=list(c('WISCRY7V','MWARM30 '),1:151)) > y <- array(NA,dim=c(2,151),dimnames=list(c('WISCRY7V','MWARM30 '),1:151)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = 'TRUE' > par2 = '2' > par1 = '1' > ylab = 'Y Variable Name' > xlab = 'X Variable Name' > main = 'Title Goes Here' > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > intercept<-as.logical(par3) > x <- t(x) > x1<-as.numeric(x[,cat1]) > f1<-as.character(x[,cat2]) > xdf<-data.frame(x1,f1) > (V1<-dimnames(y)[[1]][cat1]) [1] "WISCRY7V" > (V2<-dimnames(y)[[1]][cat2]) [1] "MWARM30\r" > names(xdf)<-c('Response', 'Treatment') > if(intercept == FALSE) (lmxdf<-lm(Response ~ Treatment - 1, data = xdf) ) else (lmxdf<-lm(Response ~ Treatment, data = xdf) ) Call: lm(formula = Response ~ Treatment, data = xdf) Coefficients: (Intercept) Treatment2 Treatment3 87.450 4.811 6.550 > (aov.xdf<-aov(lmxdf) ) Call: aov(formula = lmxdf) Terms: Treatment Residuals Sum of Squares 958.412 16081.204 Deg. of Freedom 2 148 Residual standard error: 10.42386 Estimated effects may be unbalanced > (anova.xdf<-anova(lmxdf) ) Analysis of Variance Table Response: Response Df Sum Sq Mean Sq F value Pr(>F) Treatment 2 958.4 479.21 4.4103 0.01379 * Residuals 148 16081.2 108.66 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 > > #Note: the /var/www/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/www/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ANOVA Model', length(lmxdf$coefficients)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, paste(V1, ' ~ ', V2), length(lmxdf$coefficients)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'means',,TRUE) > for(i in 1:length(lmxdf$coefficients)){ + a<-table.element(a, round(lmxdf$coefficients[i], digits=3),,FALSE) + } > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/www/rcomp/tmp/1ht0w1322222471.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ANOVA Statistics', 5+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ',,TRUE) > a<-table.element(a, 'Df',,FALSE) > a<-table.element(a, 'Sum Sq',,FALSE) > a<-table.element(a, 'Mean Sq',,FALSE) > a<-table.element(a, 'F value',,FALSE) > a<-table.element(a, 'Pr(>F)',,FALSE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, V2,,TRUE) > a<-table.element(a, anova.xdf$Df[1],,FALSE) > a<-table.element(a, round(anova.xdf$'Sum Sq'[1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Mean Sq'[1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'F value'[1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Pr(>F)'[1], digits=3),,FALSE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'Residuals',,TRUE) > a<-table.element(a, anova.xdf$Df[2],,FALSE) > a<-table.element(a, round(anova.xdf$'Sum Sq'[2], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Mean Sq'[2], digits=3),,FALSE) > a<-table.element(a, ' ',,FALSE) > a<-table.element(a, ' ',,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/www/rcomp/tmp/2ib7o1322222471.tab") > postscript(file="/var/www/rcomp/tmp/33osr1322222471.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(Response ~ Treatment, data=xdf, xlab=V2, ylab=V1) Warning message: In title(xlab = "MWARM30\r", ylab = "WISCRY7V") : font width unknown for character 0xd > dev.off() null device 1 > if(intercept==TRUE){ + thsd<-TukeyHSD(aov.xdf) + postscript(file="/var/www/rcomp/tmp/4to8n1322222471.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + plot(thsd) + dev.off() + } null device 1 > if(intercept==TRUE){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Tukey Honest Significant Difference Comparisons', 5,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a, ' ', 1, TRUE) + for(i in 1:4){ + a<-table.element(a,colnames(thsd[[1]])[i], 1, TRUE) + } + a<-table.row.end(a) + for(i in 1:length(rownames(thsd[[1]]))){ + a<-table.row.start(a) + a<-table.element(a,rownames(thsd[[1]])[i], 1, TRUE) + for(j in 1:4){ + a<-table.element(a,round(thsd[[1]][i,j], digits=3), 1, FALSE) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/5sxvm1322222471.tab") + } > if(intercept==FALSE){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'TukeyHSD Message', 1,TRUE) + a<-table.row.end(a) + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Must Include Intercept to use Tukey Test ', 1, FALSE) + a<-table.row.end(a) + a<-table.end(a) + table.save(a,file="/var/www/rcomp/tmp/68vxz1322222471.tab") + } > library(car) Loading required package: MASS Loading required package: nnet Loading required package: survival Loading required package: splines > lt.lmxdf<-levene.test(lmxdf) Warning message: 'levene.test' is deprecated. Use 'leveneTest' instead. See help("Deprecated") and help("car-deprecated"). > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Levenes Test for Homogeneity of Variance', 4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,' ', 1, TRUE) > for (i in 1:3){ + a<-table.element(a,names(lt.lmxdf)[i], 1, FALSE) + } > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Group', 1, TRUE) > for (i in 1:3){ + a<-table.element(a,round(lt.lmxdf[[i]][1], digits=3), 1, FALSE) + } > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,' ', 1, TRUE) > a<-table.element(a,lt.lmxdf[[1]][2], 1, FALSE) > a<-table.element(a,' ', 1, FALSE) > a<-table.element(a,' ', 1, FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/www/rcomp/tmp/7fc5c1322222471.tab") > > try(system("convert tmp/33osr1322222471.ps tmp/33osr1322222471.png",intern=TRUE)) character(0) > try(system("convert tmp/4to8n1322222471.ps tmp/4to8n1322222471.png",intern=TRUE)) GPL Ghostscript 8.71: Unrecoverable error, exit code 1 GPL Ghostscript 8.71: Unrecoverable error, exit code 1 convert: Postscript delegate failed `tmp/4to8n1322222471.ps': No such file or directory @ ps.c/ReadPSImage/765. convert: missing an image filename `tmp/4to8n1322222471.png' @ convert.c/ConvertImageCommand/2838. [1] "Error: /rangecheck in --setdash--" [2] "Operand stack:" [3] " --nostringval-- 0" [4] "Execution stack:" [5] " %interp_exit .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- --nostringval-- --nostringval-- false 1 %stopped_push 1878 1 3 %oparray_pop 1877 1 3 %oparray_pop --nostringval-- 1861 1 3 %oparray_pop 1755 1 3 %oparray_pop --nostringval-- %errorexec_pop .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- 1756 2 3 %oparray_pop" [6] "Dictionary stack:" [7] " --dict:1160/1684(ro)(G)-- --dict:0/20(G)-- --dict:98/200(L)--" [8] "Current allocation mode is local" [9] "Current file position is 3167" [10] "Error: /rangecheck in --setdash--" [11] "Operand stack:" [12] " --nostringval-- 0" [13] "Execution stack:" [14] " %interp_exit .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- --nostringval-- --nostringval-- false 1 %stopped_push 1878 1 3 %oparray_pop 1877 1 3 %oparray_pop --nostringval-- 1861 1 3 %oparray_pop 1755 1 3 %oparray_pop --nostringval-- %errorexec_pop .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- 1756 2 3 %oparray_pop" [15] "Dictionary stack:" [16] " --dict:1160/1684(ro)(G)-- --dict:0/20(G)-- --dict:98/200(L)--" [17] "Current allocation mode is local" [18] "Current file position is 3167" Warning message: running command 'convert tmp/4to8n1322222471.ps tmp/4to8n1322222471.png' had status 1 > > > proc.time() user system elapsed 1.076 0.196 1.399