R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.

> x <- array(list(95
+ ,81
+ ,84
+ ,87
+ ,90
+ ,97
+ ,91
+ ,91
+ ,88
+ ,84
+ ,87
+ ,87
+ ,92
+ ,89
+ ,92
+ ,84
+ ,85
+ ,91
+ ,84
+ ,81
+ ,80
+ ,69
+ ,80
+ ,73
+ ,84
+ ,75
+ ,73
+ ,84
+ ,84
+ ,77
+ ,85
+ ,91
+ ,86
+ ,89
+ ,87
+ ,82
+ ,83
+ ,90
+ ,82
+ ,86
+ ,72
+ ,73
+ ,91
+ ,96
+ ,99
+ ,90
+ ,88
+ ,90
+ ,77
+ ,73
+ ,78
+ ,88
+ ,86
+ ,100
+ ,88
+ ,67
+ ,73
+ ,88
+ ,89
+ ,95
+ ,102
+ ,94
+ ,93
+ ,103
+ ,88
+ ,91
+ ,84
+ ,77
+ ,81
+ ,87
+ ,89
+ ,98
+ ,88
+ ,104
+ ,88
+ ,93
+ ,89
+ ,90
+ ,101
+ ,107
+ ,85
+ ,88
+ ,96
+ ,79
+ ,113
+ ,111
+ ,107
+ ,95
+ ,84
+ ,82
+ ,99
+ ,83
+ ,98
+ ,85
+ ,82
+ ,84
+ ,105
+ ,105
+ ,99
+ ,105
+ ,100
+ ,89
+ ,96
+ ,111
+ ,105
+ ,88
+ ,90
+ ,94
+ ,93
+ ,87
+ ,92
+ ,93
+ ,90
+ ,81
+ ,69
+ ,67
+ ,NA
+ ,83
+ ,84
+ ,86
+ ,83
+ ,84
+ ,90
+ ,93
+ ,96
+ ,101
+ ,69
+ ,67
+ ,73
+ ,86
+ ,90
+ ,88
+ ,90
+ ,83
+ ,90
+ ,87
+ ,78
+ ,84
+ ,92
+ ,100
+ ,89
+ ,75
+ ,67
+ ,73
+ ,89
+ ,94
+ ,98
+ ,88
+ ,89
+ ,82
+ ,87
+ ,89
+ ,77
+ ,113
+ ,111
+ ,107
+ ,102
+ ,88
+ ,84
+ ,101
+ ,94
+ ,93
+ ,87
+ ,111
+ ,96
+ ,105
+ ,111
+ ,107
+ ,101
+ ,105
+ ,95
+ ,79
+ ,97
+ ,89
+ ,86
+ ,83
+ ,82
+ ,95
+ ,105
+ ,92
+ ,104
+ ,69
+ ,100
+ ,79
+ ,80
+ ,75
+ ,86
+ ,87
+ ,94
+ ,81
+ ,67
+ ,83
+ ,92
+ ,92
+ ,92
+ ,95
+ ,102
+ ,102
+ ,97
+ ,90
+ ,98
+ ,87
+ ,98
+ ,94
+ ,94
+ ,94
+ ,83
+ ,105
+ ,101
+ ,107
+ ,94
+ ,96
+ ,107
+ ,88
+ ,94
+ ,91
+ ,105
+ ,105
+ ,83
+ ,113
+ ,105
+ ,100
+ ,69
+ ,84
+ ,77
+ ,69
+ ,72
+ ,74
+ ,100
+ ,96
+ ,92
+ ,113
+ ,94
+ ,100
+ ,88
+ ,107
+ ,92
+ ,104
+ ,103
+ ,93
+ ,94
+ ,95
+ ,89
+ ,91
+ ,73
+ ,86
+ ,103
+ ,110
+ ,97
+ ,95
+ ,84
+ ,82
+ ,69
+ ,67
+ ,73
+ ,86
+ ,73
+ ,93
+ ,108
+ ,84
+ ,97
+ ,83
+ ,79
+ ,93
+ ,102
+ ,91
+ ,89
+ ,94
+ ,92
+ ,86
+ ,113
+ ,107
+ ,89
+ ,113
+ ,111
+ ,107
+ ,93
+ ,89
+ ,90
+ ,105
+ ,110
+ ,104
+ ,88
+ ,98
+ ,96
+ ,90
+ ,95
+ ,93
+ ,92
+ ,84
+ ,104
+ ,81
+ ,73
+ ,83
+ ,86
+ ,86
+ ,92
+ ,85
+ ,98
+ ,83
+ ,86
+ ,90
+ ,83
+ ,97
+ ,97
+ ,96
+ ,103
+ ,106
+ ,84
+ ,102
+ ,106
+ ,107)
+ ,dim=c(3
+ ,104)
+ ,dimnames=list(c('WJ10ARD'
+ ,'WJ10AMA'
+ ,'WJ10AKN
')
+ ,1:104))
>  y <- array(NA,dim=c(3,104),dimnames=list(c('WJ10ARD','WJ10AMA','WJ10AKN
'),1:104))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'FALSE'
> par1 = '3'
> ylab = 'Test Scores'
> xlab = 'CARE Variable Names'
> main = 'CARE DATA'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1mx4u1319484535.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
Warning messages:
1: In strwidth(labels, "user") : font width unknown for character 0xd
2: In text.default(x, y, txt, cex = cex, font = font) :
  font width unknown for character 0xd
3: In text.default(x, y, txt, cex = cex, font = font) :
  font metrics unknown for character 0xd
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2qa3v1319484535.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
      [,1] [,2] [,3]
[1,]  69.0   67   73
[2,]  86.0   84   83
[3,]  90.0   90   90
[4,]  99.5   98   96
[5,] 113.0  111  107

$n
[1] 104 104 103

$conf
         [,1]     [,2]     [,3]
[1,] 87.90842 87.83096 87.97613
[2,] 92.09158 92.16904 92.02387

$out
numeric(0)

$group
numeric(0)

$names
[1] "WJ10ARD"   "WJ10AMA"   "WJ10AKN\r"

Warning messages:
1: In axis(side = 1, at = 1:3, labels = c("WJ10ARD", "WJ10AMA", "WJ10AKN\r" :
  font width unknown for character 0xd
2: In axis(side = 1, at = 1:3, labels = c("WJ10ARD", "WJ10AMA", "WJ10AKN\r" :
  font width unknown for character 0xd
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,round(r$stats[j,i], digits=2))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3dtit1319484535.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(r$conf[1,i], digits=2))
+ a<-table.element(a, round(r$stats[3,i], digits=2))
+ a<-table.element(a,round(r$conf[2,i], digits=2))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4u4dy1319484535.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(mean(z[i], trim=par3/100, na.rm=TRUE), digits=2))
+ a<-table.element(a,round(sd(z[i], na.rm=TRUE), digits=2))
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/506xw1319484535.tab") 
> 
> try(system("convert tmp/1mx4u1319484535.ps tmp/1mx4u1319484535.png",intern=TRUE))
character(0)
> try(system("convert tmp/2qa3v1319484535.ps tmp/2qa3v1319484535.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  0.803   0.137   0.951