R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> x <- array(list(88
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+ ,dim=c(5
+ ,104)
+ ,dimnames=list(c('WJ7AFS'
+ ,'WJ7AVA'
+ ,'WJ7ARD'
+ ,'WJ7AMA'
+ ,'WJ7AKN')
+ ,1:104))
>  y <- array(NA,dim=c(5,104),dimnames=list(c('WJ7AFS','WJ7AVA','WJ7ARD','WJ7AMA','WJ7AKN'),1:104))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'FALSE'
> par1 = '3'
> ylab = 'Test Scores'
> xlab = 'CARE Variable Names'
> main = 'CARE DATA'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/13xsl1319550045.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2v4jn1319550045.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
     [,1]  [,2]  [,3] [,4] [,5]
[1,]   74  71.0  69.0   67   73
[2,]   86  82.0  86.0   84   83
[3,]   92  91.0  90.0   90   90
[4,]   99  97.5  99.5   98   96
[5,]  114 112.0 113.0  111  107

$n
[1] 104 104 104 104 103

$conf
         [,1]     [,2]     [,3]     [,4]     [,5]
[1,] 89.98589 88.59856 87.90842 87.83096 87.97613
[2,] 94.01411 93.40144 92.09158 92.16904 92.02387

$out
numeric(0)

$group
numeric(0)

$names
[1] "WJ7AFS" "WJ7AVA" "WJ7ARD" "WJ7AMA" "WJ7AKN"

> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,round(r$stats[j,i], digits=2))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3vvmp1319550045.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(r$conf[1,i], digits=2))
+ a<-table.element(a, round(r$stats[3,i], digits=2))
+ a<-table.element(a,round(r$conf[2,i], digits=2))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4o0x71319550045.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(mean(z[i], trim=par3/100, na.rm=TRUE), digits=2))
+ a<-table.element(a,round(sd(z[i], na.rm=TRUE), digits=2))
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/5cgbk1319550045.tab") 
> 
> try(system("convert tmp/13xsl1319550045.ps tmp/13xsl1319550045.png",intern=TRUE))
character(0)
> try(system("convert tmp/2v4jn1319550045.ps tmp/2v4jn1319550045.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.004   0.141   1.148