R version 2.15.2 (2012-10-26) -- "Trick or Treat" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i686-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- array(list('UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'HI' + ,'UK' + ,'HI' + ,'UK' + ,'LO' + ,'UK' + ,'LO' + ,'UK' + ,NA + ,'UK' + ,'LO' + ,'UK' + ,NA + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,NA + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'LO' + ,'B' + ,'LO' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,NA + ,'B' + ,'HI' + ,'B' + ,'HI' + ,'B' + ,NA + ,'B' + ,NA + ,'B' + ,'HI' + ,'B' + ,NA + ,'B' + ,NA + ,'B' + ,NA + ,'B' + ,NA + ,'B' + ,NA + ,'B' + ,NA + ,'B' + ,NA) + ,dim=c(2 + ,282) + ,dimnames=list(c('country' + ,'spr') + ,1:282)) > y <- array(NA,dim=c(2,282),dimnames=list(c('country','spr'),1:282)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } There were 50 or more warnings (use warnings() to see the first 50) > par3 = 'Pearson Chi-Squared' > par2 = '2' > par1 = '1' > main = 'Association Plot' > par3 <- 'Pearson Chi-Squared' > par2 <- '2' > par1 <- '1' > #'GNU S' R Code compiled by R2WASP v. 1.0.44 () > #Author: Dr. Ian E. Holliday > #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/ > #Source of accompanying publication: > #Technical description: > library(vcd) Loading required package: MASS Loading required package: grid Loading required package: colorspace > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > simulate.p.value=FALSE > if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE > x <- t(x) > (z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,])))) [,1] [,2] [1,] "UK" "HI" [2,] "UK" "LO" [3,] "UK" "LO" [4,] "UK" "HI" [5,] "UK" "HI" [6,] "UK" "LO" [7,] "UK" "LO" [8,] "UK" "LO" [9,] "UK" "LO" [10,] "UK" "HI" [11,] "UK" "LO" [12,] "UK" "LO" [13,] "UK" "LO" [14,] "UK" "HI" [15,] "UK" "LO" [16,] "UK" "LO" [17,] "UK" "LO" [18,] "UK" "HI" [19,] "UK" "LO" [20,] "UK" "LO" [21,] "UK" "HI" [22,] "UK" "HI" [23,] "UK" "LO" [24,] "UK" "LO" [25,] "UK" "LO" [26,] "UK" "HI" [27,] "UK" "LO" [28,] "UK" "LO" [29,] "UK" "LO" [30,] "UK" "LO" [31,] "UK" "LO" [32,] "UK" "LO" [33,] "UK" "LO" [34,] "UK" "HI" [35,] "UK" "LO" [36,] "UK" "LO" [37,] "UK" "LO" [38,] "UK" "LO" [39,] "UK" "HI" [40,] "UK" "LO" [41,] "UK" "LO" [42,] "UK" "LO" [43,] "UK" "HI" [44,] "UK" "LO" [45,] "UK" "HI" [46,] "UK" "LO" [47,] "UK" "LO" [48,] "UK" "HI" [49,] "UK" "HI" [50,] "UK" "HI" [51,] "UK" "HI" [52,] "UK" "LO" [53,] "UK" "LO" [54,] "UK" "HI" [55,] "UK" "HI" [56,] "UK" "LO" [57,] "UK" "HI" [58,] "UK" "LO" [59,] "UK" "LO" [60,] "UK" "HI" [61,] "UK" "LO" [62,] "UK" "LO" [63,] "UK" "LO" [64,] "UK" "HI" [65,] "UK" "HI" [66,] "UK" "LO" [67,] "UK" "LO" [68,] "UK" "LO" [69,] "UK" "LO" [70,] "UK" "LO" [71,] "UK" "HI" [72,] "UK" "LO" [73,] "UK" "LO" [74,] "UK" "LO" [75,] "UK" "LO" [76,] "UK" "HI" [77,] "UK" "LO" [78,] "UK" "LO" [79,] "UK" "HI" [80,] "UK" "LO" [81,] "UK" "LO" [82,] "UK" "LO" [83,] "UK" "HI" [84,] "UK" "HI" [85,] "UK" "LO" [86,] "UK" "LO" [87,] "UK" "LO" [88,] "UK" "LO" [89,] "UK" "LO" [90,] "UK" "HI" [91,] "UK" "LO" [92,] "UK" "LO" [93,] "UK" "LO" [94,] "UK" "LO" [95,] "UK" "HI" [96,] "UK" "LO" [97,] "UK" "HI" [98,] "UK" "HI" [99,] "UK" "LO" [100,] "UK" "LO" [101,] "UK" "LO" [102,] "UK" "HI" [103,] "UK" "HI" [104,] "UK" "LO" [105,] "UK" "LO" [106,] "UK" "HI" [107,] "UK" "LO" [108,] "UK" "HI" [109,] "UK" "HI" [110,] "UK" "LO" [111,] "UK" "LO" [112,] "UK" NA [113,] "UK" "LO" [114,] "UK" NA [115,] "B" "LO" [116,] "B" "HI" [117,] "B" "LO" [118,] "B" "LO" [119,] "B" "LO" [120,] "B" "LO" [121,] "B" "LO" [122,] "B" "LO" [123,] "B" "LO" [124,] "B" "HI" [125,] "B" "LO" [126,] "B" "LO" [127,] "B" "LO" [128,] "B" "HI" [129,] "B" "LO" [130,] "B" "LO" [131,] "B" "LO" [132,] "B" "LO" [133,] "B" "LO" [134,] "B" "LO" [135,] "B" "HI" [136,] "B" "LO" [137,] "B" "LO" [138,] "B" "LO" [139,] "B" "LO" [140,] "B" "LO" [141,] "B" "HI" [142,] "B" "LO" [143,] "B" "HI" [144,] "B" "HI" [145,] "B" "LO" [146,] "B" "LO" [147,] "B" "LO" [148,] "B" "LO" [149,] "B" "LO" [150,] "B" "HI" [151,] "B" "LO" [152,] "B" "HI" [153,] "B" "LO" [154,] "B" "LO" [155,] "B" "LO" [156,] "B" "LO" [157,] "B" "LO" [158,] "B" "LO" [159,] "B" "LO" [160,] "B" "HI" [161,] "B" "LO" [162,] "B" "LO" [163,] "B" "HI" [164,] "B" "HI" [165,] "B" "HI" [166,] "B" "HI" [167,] "B" "HI" [168,] "B" "LO" [169,] "B" "HI" [170,] "B" "LO" [171,] "B" "HI" [172,] "B" "LO" [173,] "B" "LO" [174,] "B" "LO" [175,] "B" "LO" [176,] "B" "HI" [177,] "B" "LO" [178,] "B" "HI" [179,] "B" "LO" [180,] "B" "LO" [181,] "B" "LO" [182,] "B" "HI" [183,] "B" "LO" [184,] "B" "LO" [185,] "B" "HI" [186,] "B" "LO" [187,] "B" "HI" [188,] "B" "HI" [189,] "B" "HI" [190,] "B" "HI" [191,] "B" "HI" [192,] "B" "LO" [193,] "B" "LO" [194,] "B" "HI" [195,] "B" "HI" [196,] "B" "HI" [197,] "B" "LO" [198,] "B" "HI" [199,] "B" "HI" [200,] "B" "LO" [201,] "B" "HI" [202,] "B" "HI" [203,] "B" "LO" [204,] "B" "LO" [205,] "B" "HI" [206,] "B" "LO" [207,] "B" "HI" [208,] "B" "LO" [209,] "B" "LO" [210,] "B" "HI" [211,] "B" "LO" [212,] "B" "LO" [213,] "B" "LO" [214,] "B" "HI" [215,] "B" "HI" [216,] "B" "LO" [217,] "B" "HI" [218,] "B" "LO" [219,] "B" "LO" [220,] "B" "HI" [221,] "B" "LO" [222,] "B" "HI" [223,] "B" "HI" [224,] "B" "LO" [225,] "B" "HI" [226,] "B" "LO" [227,] "B" "LO" [228,] "B" "LO" [229,] "B" "LO" [230,] "B" "HI" [231,] "B" "HI" [232,] "B" "LO" [233,] "B" "LO" [234,] "B" "LO" [235,] "B" "HI" [236,] "B" "HI" [237,] "B" "LO" [238,] "B" "HI" [239,] "B" "HI" [240,] "B" "HI" [241,] "B" "HI" [242,] "B" "HI" [243,] "B" "HI" [244,] "B" "LO" [245,] "B" "LO" [246,] "B" "HI" [247,] "B" "LO" [248,] "B" "HI" [249,] "B" "HI" [250,] "B" NA [251,] "B" "HI" [252,] "B" "LO" [253,] "B" "HI" [254,] "B" "HI" [255,] "B" "HI" [256,] "B" "HI" [257,] "B" "HI" [258,] "B" "HI" [259,] "B" "LO" [260,] "B" "LO" [261,] "B" "HI" [262,] "B" "LO" [263,] "B" "HI" [264,] "B" "HI" [265,] "B" "LO" [266,] "B" "LO" [267,] "B" "HI" [268,] "B" "HI" [269,] "B" "HI" [270,] "B" NA [271,] "B" "HI" [272,] "B" "HI" [273,] "B" NA [274,] "B" NA [275,] "B" "HI" [276,] "B" NA [277,] "B" NA [278,] "B" NA [279,] "B" NA [280,] "B" NA [281,] "B" NA [282,] "B" NA > (table1 <- table(z[,cat1],z[,cat2])) HI LO B 72 85 UK 37 75 > (V1<-dimnames(y)[[1]][cat1]) [1] "country" > (V2<-dimnames(y)[[1]][cat2]) [1] "spr" > postscript(file="/var/wessaorg/rcomp/tmp/1ey1n1354442200.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T) > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ', 1,TRUE) > for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } > a<-table.row.end(a) > for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, table1[nr, nc], 1, FALSE) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/21rft1354442200.tab") > (cst<-chisq.test(table1, simulate.p.value=simulate.p.value) ) Pearson's Chi-squared test with Yates' continuity correction data: table1 X-squared = 3.9443, df = 1, p-value = 0.04703 > if (par3 == 'McNemar Chi-Squared') { + (cst <- mcnemar.test(table1)) + } > if (par3=='Fisher Exact Test') { + (cst <- fisher.test(table1)) + } > if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a, ' ', 1,TRUE) + for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } + a<-table.row.end(a) + for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/33rq81354442200.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Statistical Results',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, cst$method, 2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE) > if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE) > if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE) > if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE) > if (par3=='Fisher Exact Test') { + if ((ncol(table1) == 2) & (nrow(table1) == 2)) { + a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE) + } else { + a<-table.element(a, '--', 1,FALSE) + } + } else { + a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE) + } > a<-table.row.end(a) > if(!simulate.p.value){ + if(par3!='Fisher Exact Test') { + a<-table.row.start(a) + a<-table.element(a, 'Degrees of Freedom', 1, TRUE) + a<-table.element(a, cst$parameter, 1,FALSE) + a<-table.row.end(a) + } + } > a<-table.row.start(a) > a<-table.element(a, 'P value', 1, TRUE) > a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/47oer1354442200.tab") > > try(system("convert tmp/1ey1n1354442200.ps tmp/1ey1n1354442200.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.575 0.197 1.755