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Type 'q()' to quit R. > x <- c(0.133,0.137,0.141,0.144,0.144,0.145,0.145,0.146,0.146,0.146,0.146,0.147,0.147,0.147,0.147,0.148,0.148,0.149,0.149,0.150,0.150,0.150,0.151,0.151,0.151,0.151,0.151,0.151,0.151,0.152,0.152,0.152,0.162,0.162,0.163,0.164,0.165,0.165) > par3 = '0.0028' > par2 = '5' > par1 = '200' > par3 <- '0.0028' > par2 <- '5' > par1 <- '200' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P., (2012), Bootstrap Plot for Central Tendency (v1.0.10) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_bootstrapplot1.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > par2 <- as.numeric(par2) > if (par3 == '0') bw <- NULL > if (par3 != '0') bw <- as.numeric(par3) > if (par1 < 10) par1 = 10 > if (par1 > 5000) par1 = 5000 > library(modeest) This is package 'modeest' written by Paul PONCET. For a complete list of functions, use 'library(help = "modeest")' or 'help.start()'. > library(lattice) > library(boot) Attaching package: 'boot' The following object(s) are masked from 'package:lattice': melanoma > boot.stat <- function(s,i) + { + s.mean <- mean(s[i]) + s.median <- median(s[i]) + s.midrange <- (max(s[i]) + min(s[i])) / 2 + s.mode <- mlv(s[i], method='mfv')$M + s.kernelmode <- mlv(s[i], method='kernel', bw=bw)$M + c(s.mean, s.median, s.midrange, s.mode, s.kernelmode) + } > (r <- boot(x,boot.stat, R=par1, stype='i')) ORDINARY NONPARAMETRIC BOOTSTRAP Call: boot(data = x, statistic = boot.stat, R = par1, stype = "i") Bootstrap Statistics : original bias std. error t1* 0.1499737 3.592105e-05 0.0011105313 t2* 0.1495000 -1.225000e-04 0.0011631891 t3* 0.1490000 8.500000e-04 0.0015683746 t4* 0.1510000 -8.916667e-04 0.0023985124 t5* 0.1488270 -7.229387e-05 0.0008643765 There were 50 or more warnings (use warnings() to see the first 50) > postscript(file="/var/wessaorg/rcomp/tmp/17jzz1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,1],type='p',ylab='simulated values',main='Simulation of Mean') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2nx9a1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,2],type='p',ylab='simulated values',main='Simulation of Median') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3518a1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,3],type='p',ylab='simulated values',main='Simulation of Midrange') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4gr6v1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,4],type='p',ylab='simulated values',main='Simulation of Mode') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5x9jv1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,5],type='p',ylab='simulated values',main='Simulation of Mode of Kernel Density') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6ssxc1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,1],col='black',main='Density Plot',xlab='mean') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/7nbfl1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,2],col='black',main='Density Plot',xlab='median') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/85cnx1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,3],col='black',main='Density Plot',xlab='midrange') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/9aizl1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,4],col='black',main='Density Plot',xlab='mode') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/10e0ql1354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,5],col='black',main='Density Plot',xlab='mode of kernel dens.') > dev.off() null device 1 > z <- data.frame(cbind(r$t[,1],r$t[,2],r$t[,3],r$t[,4],r$t[,5])) > colnames(z) <- list('mean','median','midrange','mode','mode k.dens') > postscript(file="/var/wessaorg/rcomp/tmp/11gb031354841243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(z,notch=TRUE,ylab='simulated values',main='Bootstrap Simulation - Central Tendency') Warning message: In bxp(list(stats = c(0.147263157894737, 0.149210526315789, 0.149947368421053, : some notches went outside hinges ('box'): maybe set notch=FALSE > grid() > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimation Results of Bootstrap',6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'statistic',header=TRUE) > a<-table.element(a,'Q1',header=TRUE) > a<-table.element(a,'Estimate',header=TRUE) > a<-table.element(a,'Q3',header=TRUE) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,'IQR',header=TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mean',header=TRUE) > q1 <- quantile(r$t[,1],0.25)[[1]] > q3 <- quantile(r$t[,1],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[1],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element( a,signif( sqrt(var(r$t[,1])),par2 ) ) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'median',header=TRUE) > q1 <- quantile(r$t[,2],0.25)[[1]] > q3 <- quantile(r$t[,2],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[2],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,2])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'midrange',header=TRUE) > q1 <- quantile(r$t[,3],0.25)[[1]] > q3 <- quantile(r$t[,3],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[3],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,3])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode',header=TRUE) > q1 <- quantile(r$t[,4],0.25)[[1]] > q3 <- quantile(r$t[,4],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[4],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,4])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode k.dens',header=TRUE) > q1 <- quantile(r$t[,5],0.25)[[1]] > q3 <- quantile(r$t[,5],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[5],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,5])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/12dpmi1354841243.tab") > > try(system("convert tmp/17jzz1354841243.ps tmp/17jzz1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/2nx9a1354841243.ps tmp/2nx9a1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/3518a1354841243.ps tmp/3518a1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/4gr6v1354841243.ps tmp/4gr6v1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/5x9jv1354841243.ps tmp/5x9jv1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/6ssxc1354841243.ps tmp/6ssxc1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/7nbfl1354841243.ps tmp/7nbfl1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/85cnx1354841243.ps tmp/85cnx1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/9aizl1354841243.ps tmp/9aizl1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/10e0ql1354841243.ps tmp/10e0ql1354841243.png",intern=TRUE)) character(0) > try(system("convert tmp/11gb031354841243.ps tmp/11gb031354841243.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 8.252 0.938 9.382