R version 2.15.2 (2012-10-26) -- "Trick or Treat"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,NA
+ ,'Yes'
+ ,NA
+ ,'No'
+ ,NA
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'Yes'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'Treatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'No'
+ ,'NoTreatment'
+ ,'Yes'
+ ,'NoTreatment'
+ ,'Yes'
+ ,'NoTreatment'
+ ,'No')
+ ,dim=c(2
+ ,154)
+ ,dimnames=list(c('T20'
+ ,'Correct')
+ ,1:154))
>  y <- array(NA,dim=c(2,154),dimnames=list(c('T20','Correct'),1:154))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
There were 50 or more warnings (use warnings() to see the first 50)
> par3 = 'Pearson Chi-Squared'
> par2 = '2'
> par1 = '1'
> main = 'Association Plot'
> par3 <- 'Pearson Chi-Squared'
> par2 <- '2'
> par1 <- '1'
> #'GNU S' R Code compiled by R2WASP v. 1.0.44 ()
> #Author: Dr. Ian E. Holliday
> #To cite this work: Ian E. Holliday, 2009, YOUR SOFTWARE TITLE (vNUMBER) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_YOURPAGE.wasp/
> #Source of accompanying publication: 
> #Technical description: 
> library(vcd)
Loading required package: MASS
Loading required package: grid
Loading required package: colorspace
> cat1 <- as.numeric(par1) #
> cat2<- as.numeric(par2) #
> simulate.p.value=FALSE
> if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE
> x <- t(x)
> (z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,]))))
       [,1]          [,2] 
  [1,] NA            "No" 
  [2,] NA            "No" 
  [3,] NA            "No" 
  [4,] NA            "No" 
  [5,] NA            "No" 
  [6,] NA            "No" 
  [7,] NA            "No" 
  [8,] NA            "No" 
  [9,] NA            "No" 
 [10,] NA            "No" 
 [11,] NA            "No" 
 [12,] NA            "No" 
 [13,] NA            "No" 
 [14,] NA            "No" 
 [15,] NA            "No" 
 [16,] NA            "No" 
 [17,] NA            "Yes"
 [18,] NA            "No" 
 [19,] NA            "No" 
 [20,] NA            "Yes"
 [21,] NA            "No" 
 [22,] NA            "No" 
 [23,] NA            "No" 
 [24,] NA            "No" 
 [25,] NA            "No" 
 [26,] NA            "No" 
 [27,] NA            "No" 
 [28,] NA            "No" 
 [29,] NA            "No" 
 [30,] NA            "No" 
 [31,] NA            "No" 
 [32,] NA            "No" 
 [33,] NA            "No" 
 [34,] NA            "No" 
 [35,] NA            "No" 
 [36,] NA            "No" 
 [37,] NA            "No" 
 [38,] NA            "No" 
 [39,] NA            "No" 
 [40,] NA            "No" 
 [41,] NA            "Yes"
 [42,] NA            "No" 
 [43,] NA            "No" 
 [44,] NA            "No" 
 [45,] NA            "No" 
 [46,] NA            "No" 
 [47,] NA            "No" 
 [48,] NA            "No" 
 [49,] NA            "No" 
 [50,] NA            "No" 
 [51,] NA            "No" 
 [52,] NA            "Yes"
 [53,] NA            "No" 
 [54,] NA            "Yes"
 [55,] NA            "No" 
 [56,] NA            "No" 
 [57,] NA            "No" 
 [58,] NA            "No" 
 [59,] NA            "No" 
 [60,] NA            "Yes"
 [61,] NA            "No" 
 [62,] NA            "No" 
 [63,] NA            "No" 
 [64,] NA            "No" 
 [65,] NA            "No" 
 [66,] NA            "No" 
 [67,] NA            "Yes"
 [68,] NA            "No" 
 [69,] NA            "No" 
 [70,] NA            "No" 
 [71,] NA            "No" 
 [72,] NA            "No" 
 [73,] NA            "No" 
 [74,] NA            "No" 
 [75,] NA            "No" 
 [76,] NA            "No" 
 [77,] NA            "No" 
 [78,] NA            "No" 
 [79,] NA            "Yes"
 [80,] NA            "No" 
 [81,] NA            "No" 
 [82,] NA            "No" 
 [83,] NA            "No" 
 [84,] NA            "Yes"
 [85,] NA            "No" 
 [86,] NA            "No" 
 [87,] "NoTreatment" "No" 
 [88,] "Treatment"   "No" 
 [89,] "NoTreatment" "No" 
 [90,] "NoTreatment" "No" 
 [91,] "NoTreatment" "No" 
 [92,] "Treatment"   "No" 
 [93,] "NoTreatment" "No" 
 [94,] "NoTreatment" "No" 
 [95,] "Treatment"   "No" 
 [96,] "NoTreatment" "No" 
 [97,] "Treatment"   "No" 
 [98,] "NoTreatment" "No" 
 [99,] "NoTreatment" "No" 
[100,] "NoTreatment" "No" 
[101,] "NoTreatment" "No" 
[102,] "NoTreatment" "No" 
[103,] "NoTreatment" "No" 
[104,] "NoTreatment" "No" 
[105,] "Treatment"   "No" 
[106,] "NoTreatment" "No" 
[107,] "NoTreatment" "No" 
[108,] "Treatment"   "No" 
[109,] "NoTreatment" "No" 
[110,] "NoTreatment" "No" 
[111,] "Treatment"   "No" 
[112,] "Treatment"   "No" 
[113,] "NoTreatment" "No" 
[114,] "Treatment"   "No" 
[115,] "NoTreatment" "No" 
[116,] "NoTreatment" "No" 
[117,] "NoTreatment" "No" 
[118,] "NoTreatment" "No" 
[119,] "NoTreatment" "No" 
[120,] "NoTreatment" "No" 
[121,] "NoTreatment" "No" 
[122,] "NoTreatment" "No" 
[123,] "Treatment"   "No" 
[124,] "NoTreatment" "No" 
[125,] "NoTreatment" "No" 
[126,] "Treatment"   "No" 
[127,] "NoTreatment" "No" 
[128,] "NoTreatment" "No" 
[129,] "NoTreatment" "No" 
[130,] "NoTreatment" "No" 
[131,] "NoTreatment" "No" 
[132,] "NoTreatment" "No" 
[133,] "NoTreatment" "No" 
[134,] "NoTreatment" "No" 
[135,] "NoTreatment" "No" 
[136,] "NoTreatment" "No" 
[137,] "NoTreatment" "No" 
[138,] "Treatment"   "No" 
[139,] "Treatment"   "No" 
[140,] "NoTreatment" "No" 
[141,] "NoTreatment" "Yes"
[142,] "Treatment"   "No" 
[143,] "NoTreatment" "No" 
[144,] "NoTreatment" "No" 
[145,] "NoTreatment" "No" 
[146,] "Treatment"   "No" 
[147,] "Treatment"   "No" 
[148,] "Treatment"   "No" 
[149,] "NoTreatment" "No" 
[150,] "NoTreatment" "No" 
[151,] "NoTreatment" "No" 
[152,] "NoTreatment" "Yes"
[153,] "NoTreatment" "Yes"
[154,] "NoTreatment" "No" 
> (table1 <- table(z[,cat1],z[,cat2]))
             
              No Yes
  NoTreatment 48   3
  Treatment   17   0
> (V1<-dimnames(y)[[1]][cat1])
[1] "T20"
> (V2<-dimnames(y)[[1]][cat2])
[1] "Correct"
> postscript(file="/var/wessaorg/rcomp/tmp/18mj51355152272.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T)
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a, ' ', 1,TRUE)
> for(nc in 1:ncol(table1)){
+ a<-table.element(a, colnames(table1)[nc], 1, TRUE)
+ }
> a<-table.row.end(a)
> for(nr in 1:nrow(table1) ){
+ a<-table.element(a, rownames(table1)[nr], 1, TRUE)
+ for(nc in 1:ncol(table1) ){
+ a<-table.element(a, table1[nr, nc], 1, FALSE)
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/202hy1355152272.tab") 
> (cst<-chisq.test(table1, simulate.p.value=simulate.p.value) )

	Pearson's Chi-squared test with Yates' continuity correction

data:  table1 
X-squared = 0.1162, df = 1, p-value = 0.7331

Warning message:
In chisq.test(table1, simulate.p.value = simulate.p.value) :
  Chi-squared approximation may be incorrect
> if (par3 == 'McNemar Chi-Squared') {
+ (cst <- mcnemar.test(table1))
+ }
> if (par3=='Fisher Exact Test') {
+ (cst <- fisher.test(table1))
+ }
> if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) {
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a, ' ', 1,TRUE)
+ for(nc in 1:ncol(table1)){
+ a<-table.element(a, colnames(table1)[nc], 1, TRUE)
+ }
+ a<-table.row.end(a)
+ for(nr in 1:nrow(table1) ){
+ a<-table.element(a, rownames(table1)[nr], 1, TRUE)
+ for(nc in 1:ncol(table1) ){
+ a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE)
+ }
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/32fvb1355152272.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Statistical Results',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a, cst$method, 2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE)
> if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE)
> if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE)
> if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE)
> if (par3=='Fisher Exact Test') {
+ if ((ncol(table1) == 2) & (nrow(table1) == 2)) {
+ a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE)
+ } else {
+ a<-table.element(a, '--', 1,FALSE)
+ }
+ } else {
+ a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE)
+ }
> a<-table.row.end(a)
> if(!simulate.p.value){
+ if(par3!='Fisher Exact Test') {
+ a<-table.row.start(a)
+ a<-table.element(a, 'Degrees of Freedom', 1, TRUE)
+ a<-table.element(a, cst$parameter, 1,FALSE)
+ a<-table.row.end(a)
+ }
+ }
> a<-table.row.start(a)
> a<-table.element(a, 'P value', 1, TRUE)
> a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE)
> a<-table.row.end(a)
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/4ldfh1355152272.tab") 
> 
> try(system("convert tmp/18mj51355152272.ps tmp/18mj51355152272.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.528   0.207   1.715