R version 2.15.2 (2012-10-26) -- "Trick or Treat"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> x <- array(list(6.80
+ ,225.00
+ ,0.44
+ ,0.67
+ ,9.20
+ ,6.30
+ ,180.00
+ ,0.44
+ ,0.80
+ ,11.70
+ ,6.40
+ ,190.00
+ ,0.46
+ ,0.76
+ ,15.80
+ ,6.20
+ ,180.00
+ ,0.42
+ ,0.65
+ ,8.60
+ ,6.90
+ ,205.00
+ ,0.45
+ ,0.90
+ ,23.20
+ ,6.40
+ ,225.00
+ ,0.43
+ ,0.78
+ ,27.40
+ ,6.30
+ ,185.00
+ ,0.49
+ ,0.77
+ ,9.30
+ ,6.80
+ ,235.00
+ ,0.47
+ ,0.75
+ ,16.00
+ ,6.90
+ ,235.00
+ ,0.44
+ ,0.82
+ ,4.70
+ ,6.70
+ ,210.00
+ ,0.48
+ ,0.83
+ ,12.50
+ ,6.90
+ ,245.00
+ ,0.52
+ ,0.63
+ ,20.10
+ ,6.90
+ ,245.00
+ ,0.49
+ ,0.76
+ ,9.10
+ ,6.30
+ ,185.00
+ ,0.37
+ ,0.71
+ ,8.10
+ ,6.10
+ ,185.00
+ ,0.42
+ ,0.78
+ ,8.60
+ ,6.20
+ ,180.00
+ ,0.44
+ ,0.78
+ ,20.30
+ ,6.80
+ ,220.00
+ ,0.50
+ ,0.88
+ ,25.00
+ ,6.50
+ ,194.00
+ ,0.50
+ ,0.83
+ ,19.20
+ ,7.60
+ ,225.00
+ ,0.43
+ ,0.57
+ ,3.30
+ ,6.30
+ ,210.00
+ ,0.37
+ ,0.82
+ ,11.20
+ ,7.10
+ ,240.00
+ ,0.50
+ ,0.71
+ ,10.50
+ ,6.80
+ ,225.00
+ ,0.40
+ ,0.77
+ ,10.10
+ ,7.30
+ ,263.00
+ ,0.48
+ ,0.66
+ ,7.20
+ ,6.40
+ ,210.00
+ ,0.48
+ ,0.24
+ ,13.60
+ ,6.80
+ ,235.00
+ ,0.43
+ ,0.73
+ ,9.00
+ ,7.20
+ ,230.00
+ ,0.56
+ ,0.72
+ ,24.60
+ ,6.40
+ ,190.00
+ ,0.44
+ ,0.76
+ ,12.60
+ ,6.60
+ ,220.00
+ ,0.49
+ ,0.75
+ ,5.60
+ ,6.80
+ ,210.00
+ ,0.40
+ ,0.74
+ ,8.70
+ ,6.10
+ ,180.00
+ ,0.42
+ ,0.71
+ ,7.70
+ ,6.50
+ ,235.00
+ ,0.49
+ ,0.74
+ ,24.10
+ ,6.40
+ ,185.00
+ ,0.48
+ ,0.86
+ ,11.70
+ ,6.00
+ ,175.00
+ ,0.39
+ ,0.72
+ ,7.70
+ ,6.00
+ ,192.00
+ ,0.44
+ ,0.79
+ ,9.60
+ ,7.30
+ ,263.00
+ ,0.48
+ ,0.66
+ ,7.20
+ ,6.10
+ ,180.00
+ ,0.34
+ ,0.82
+ ,12.30
+ ,6.70
+ ,240.00
+ ,0.52
+ ,0.73
+ ,8.90
+ ,6.40
+ ,210.00
+ ,0.48
+ ,0.85
+ ,13.60
+ ,5.80
+ ,160.00
+ ,0.41
+ ,0.81
+ ,11.20
+ ,6.90
+ ,230.00
+ ,0.41
+ ,0.60
+ ,2.80
+ ,7.00
+ ,245.00
+ ,0.41
+ ,0.57
+ ,3.20
+ ,7.30
+ ,228.00
+ ,0.45
+ ,0.73
+ ,9.40
+ ,5.90
+ ,155.00
+ ,0.29
+ ,0.71
+ ,11.90
+ ,6.20
+ ,200.00
+ ,0.45
+ ,0.80
+ ,15.40
+ ,6.80
+ ,235.00
+ ,0.55
+ ,0.78
+ ,7.40
+ ,7.00
+ ,235.00
+ ,0.48
+ ,0.74
+ ,18.90
+ ,5.90
+ ,105.00
+ ,0.36
+ ,0.84
+ ,7.90
+ ,6.10
+ ,180.00
+ ,0.53
+ ,0.79
+ ,12.20
+ ,5.70
+ ,185.00
+ ,0.35
+ ,0.70
+ ,11.00
+ ,7.10
+ ,245.00
+ ,0.41
+ ,0.78
+ ,2.80
+ ,5.80
+ ,180.00
+ ,0.43
+ ,0.87
+ ,11.80
+ ,7.40
+ ,240.00
+ ,0.60
+ ,0.71
+ ,17.10
+ ,6.80
+ ,225.00
+ ,0.48
+ ,0.70
+ ,11.60
+ ,6.80
+ ,215.00
+ ,0.46
+ ,0.73
+ ,5.80
+ ,7.00
+ ,230.00
+ ,0.44
+ ,0.76
+ ,8.30)
+ ,dim=c(5
+ ,54)
+ ,dimnames=list(c('X1'
+ ,'X2'
+ ,'X3'
+ ,'X4'
+ ,'X5
')
+ ,1:54))
>  y <- array(NA,dim=c(5,54),dimnames=list(c('X1','X2','X3','X4','X5
'),1:54))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par1 = 'pearson'
> main = 'Correlation Matrix'
> par1 <- 'pearson'
> #'GNU S' R Code compiled by R2WASP v. 1.2.291 ()
> #Author: root
> #To cite this work: Patrick Wessa, (2012), Multivariate Correlation Matrix (v1.0.5) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Patrick.Wessa/rwasp_pairs.wasp/
> #Source of accompanying publication: 
> #
> panel.tau <- function(x, y, digits=2, prefix='', cex.cor)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(0, 1, 0, 1))
+ rr <- cor.test(x, y, method=par1)
+ r <- round(rr$p.value,2)
+ txt <- format(c(r, 0.123456789), digits=digits)[1]
+ txt <- paste(prefix, txt, sep='')
+ if(missing(cex.cor)) cex <- 0.5/strwidth(txt)
+ text(0.5, 0.5, txt, cex = cex)
+ }
> panel.hist <- function(x, ...)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(usr[1:2], 0, 1.5) )
+ h <- hist(x, plot = FALSE)
+ breaks <- h$breaks; nB <- length(breaks)
+ y <- h$counts; y <- y/max(y)
+ rect(breaks[-nB], 0, breaks[-1], y, col='grey', ...)
+ }
> postscript(file="/var/fisher/rcomp/tmp/1rlys1355165456.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y),diag.panel=panel.hist, upper.panel=panel.smooth, lower.panel=panel.tau, main=main)
Warning messages:
1: In strwidth(labels, "user") : font width unknown for character 0xd
2: In text.default(x, y, txt, cex = cex, font = font) :
  font width unknown for character 0xd
3: In text.default(x, y, txt, cex = cex, font = font) :
  font metrics unknown for character 0xd
> dev.off()
null device 
          1 
> 
> #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/fisher/rcomp/createtable")
> 
> n <- length(y[,1])
> n
[1] 5
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,paste('Correlations for all pairs of data series (method=',par1,')',sep=''),n+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,' ',header=TRUE)
> for (i in 1:n) {
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ }
> a<-table.row.end(a)
> for (i in 1:n) {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ for (j in 1:n) {
+ r <- cor.test(y[i,],y[j,],method=par1)
+ a<-table.element(a,round(r$estimate,3))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/fisher/rcomp/tmp/2xpjx1355165456.tab") 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Correlations for all pairs of data series with p-values',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'pair',1,TRUE)
> a<-table.element(a,'Pearson r',1,TRUE)
> a<-table.element(a,'Spearman rho',1,TRUE)
> a<-table.element(a,'Kendall tau',1,TRUE)
> a<-table.row.end(a)
> cor.test(y[1,],y[2,],method=par1)

	Pearson's product-moment correlation

data:  y[1, ] and y[2, ] 
t = 10.9136, df = 52, p-value = 4.663e-15
alternative hypothesis: true correlation is not equal to 0 
95 percent confidence interval:
 0.7295426 0.9008382 
sample estimates:
     cor 
0.834324 

> for (i in 1:(n-1))
+ {
+ for (j in (i+1):n)
+ {
+ a<-table.row.start(a)
+ dum <- paste(dimnames(t(x))[[2]][i],';',dimnames(t(x))[[2]][j],sep='')
+ a<-table.element(a,dum,header=TRUE)
+ rp <- cor.test(y[i,],y[j,],method='pearson')
+ a<-table.element(a,round(rp$estimate,4))
+ rs <- cor.test(y[i,],y[j,],method='spearman')
+ a<-table.element(a,round(rs$estimate,4))
+ rk <- cor.test(y[i,],y[j,],method='kendall')
+ a<-table.element(a,round(rk$estimate,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'p-value',header=T)
+ a<-table.element(a,paste('(',round(rp$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rs$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rk$p.value,4),')',sep=''))
+ a<-table.row.end(a)
+ }
+ }
Warning messages:
1: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
2: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
3: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
4: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
5: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
6: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
7: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
8: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
9: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
10: In cor.test.default(y[i, ], y[j, ], method = "spearman") :
  Cannot compute exact p-values with ties
> a<-table.end(a)
> table.save(a,file="/var/fisher/rcomp/tmp/3fsl81355165456.tab") 
> 
> try(system("convert tmp/1rlys1355165456.ps tmp/1rlys1355165456.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.166   0.284   1.430