R version 2.15.2 (2012-10-26) -- "Trick or Treat" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i686-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(2.1,2.1,2.11,2.12,2.13,2.13,2.13,2.13,2.14,2.15,2.16,2.17,2.16,2.2,2.19,2.2,2.2,2.2,2.21,2.22,2.25,2.33,2.33,2.35,2.37,2.38,2.38,2.41,2.41,2.41,2.41,2.42,2.42,2.43,2.44,2.44,2.43,2.44,2.44,2.44,2.44,2.44,2.43,2.42,2.43,2.43,2.43,2.43,2.43,2.44,2.43,2.43,2.44,2.43,2.43,2.44,2.46,2.48,2.49,2.5,2.53,2.55,2.57,2.56,2.56,2.57,2.56,2.57,2.58,2.58,2.58,2.59) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 72 > (np <- floor(n / par1)) [1] 6 > arr <- array(NA,dim=c(par1,np)) > j <- 0 > k <- 1 > for (i in 1:(np*par1)) + { + j = j + 1 + arr[j,k] <- x[i] + if (j == par1) { + j = 0 + k=k+1 + } + } > arr [,1] [,2] [,3] [,4] [,5] [,6] [1,] 2.10 2.16 2.37 2.43 2.43 2.53 [2,] 2.10 2.20 2.38 2.44 2.44 2.55 [3,] 2.11 2.19 2.38 2.44 2.43 2.57 [4,] 2.12 2.20 2.41 2.44 2.43 2.56 [5,] 2.13 2.20 2.41 2.44 2.44 2.56 [6,] 2.13 2.20 2.41 2.44 2.43 2.57 [7,] 2.13 2.21 2.41 2.43 2.43 2.56 [8,] 2.13 2.22 2.42 2.42 2.44 2.57 [9,] 2.14 2.25 2.42 2.43 2.46 2.58 [10,] 2.15 2.33 2.43 2.43 2.48 2.58 [11,] 2.16 2.33 2.44 2.43 2.49 2.58 [12,] 2.17 2.35 2.44 2.43 2.50 2.59 > arr.mean <- array(NA,dim=np) > arr.sd <- array(NA,dim=np) > arr.range <- array(NA,dim=np) > for (j in 1:np) + { + arr.mean[j] <- mean(arr[,j],na.rm=TRUE) + arr.sd[j] <- sd(arr[,j],na.rm=TRUE) + arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) + } > arr.mean [1] 2.130833 2.236667 2.410000 2.433333 2.450000 2.566667 > arr.sd [1] 0.021933094 0.063865389 0.022962420 0.006513389 0.025936987 0.016143298 > arr.range [1] 0.07 0.19 0.07 0.02 0.07 0.06 > (lm1 <- lm(arr.sd~arr.mean)) Call: lm(formula = arr.sd ~ arr.mean) Coefficients: (Intercept) arr.mean 0.16543 -0.05871 > (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) Call: lm(formula = log(arr.sd) ~ log(arr.mean)) Coefficients: (Intercept) log(arr.mean) 0.3317 -4.8649 > (lm2 <- lm(arr.range~arr.mean)) Call: lm(formula = arr.range ~ arr.mean) Coefficients: (Intercept) arr.mean 0.4802 -0.1688 > postscript(file="/var/fisher/rcomp/tmp/1eolw1355337243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') > dev.off() null device 1 > postscript(file="/var/fisher/rcomp/tmp/2ei9b1355337243.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') > dev.off() null device 1 > > #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/fisher/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Section',header=TRUE) > a<-table.element(a,'Mean',header=TRUE) > a<-table.element(a,'Standard Deviation',header=TRUE) > a<-table.element(a,'Range',header=TRUE) > a<-table.row.end(a) > for (j in 1:np) { + a<-table.row.start(a) + a<-table.element(a,j,header=TRUE) + a<-table.element(a,arr.mean[j]) + a<-table.element(a,arr.sd[j] ) + a<-table.element(a,arr.range[j] ) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/3ek511355337243.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/4f9891355337243.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Lambda',header=TRUE) > a<-table.element(a,1-lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/5on811355337244.tab") > > try(system("convert tmp/1eolw1355337243.ps tmp/1eolw1355337243.png",intern=TRUE)) character(0) > try(system("convert tmp/2ei9b1355337243.ps tmp/2ei9b1355337243.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.325 0.422 1.766