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Type 'q()' to quit R. > x <- c(9769,9321,9939,9336,10195,9464,10010,10213,9563,9890,9305,9391,9928,8686,9843,9627,10074,9503,10119,10000,9313,9866,9172,9241,9659,8904,9755,9080,9435,8971,10063,9793,9454,9759,8820,9403,9676,8642,9402,9610,9294,9448,10319,9548,9801,9596,8923,9746,9829,9125,9782,9441,9162,9915,10444,10209,9985,9842,9429,10132,9849,9172,10313,9819,9955,10048,10082,10541,10208,10233,9439,9963,10158,9225,10474,9757,10490,10281,10444,10640,10695,10786,9832,9747,10411,9511,10402,9701,10540,10112,10915,11183,10384,10834,9886,10216,10943,9867,10203,10837,10573,10647,11502,10656,10866,10835,9945,10331,10718,9462,10579,10633,10346,10757,11207,11013,11015,10765,10042,10661) > par9 = '1' > par8 = '2' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '1' > par3 = '0' > par2 = '-0.6' > par1 = 'FALSE' > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + qqline(residus) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 0.6407141 0.1466392 0.2121278 -0.6609639 0.1960249 -0.02960215 -0.9793686 [2,] 0.6330714 0.1309374 0.2351628 -0.6706651 0.1861191 0.00000000 -1.0140803 [3,] 0.7412975 0.0000000 0.2610414 -0.6925124 0.2385584 0.00000000 -1.0004864 [4,] NA NA NA NA NA NA NA [5,] NA NA NA NA NA NA NA [6,] NA NA NA NA NA NA NA [7,] NA NA NA NA NA NA NA [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 4e-05 0.22455 0.09355 0 0.09661 0.81808 0 [2,] 0e+00 0.26346 0.02349 0 0.11678 NA 0 [3,] 0e+00 NA 0.02134 0 0.03567 NA 0 [4,] NA NA NA NA NA NA NA [5,] NA NA NA NA NA NA NA [6,] NA NA NA NA NA NA NA [7,] NA NA NA NA NA NA NA [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.6407 0.1466 0.2121 -0.6610 0.196 -0.0296 -0.9794 s.e. 0.1504 0.1201 0.1254 0.1176 0.117 0.1284 0.1706 sigma^2 estimated as 3.455e-09: log likelihood = 888.29, aic = -1760.58 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.6407 0.1466 0.2121 -0.6610 0.196 -0.0296 -0.9794 s.e. 0.1504 0.1201 0.1254 0.1176 0.117 0.1284 0.1706 sigma^2 estimated as 3.455e-09: log likelihood = 888.29, aic = -1760.58 [[3]][[3]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0.6331 0.1309 0.2352 -0.6707 0.1861 0 -1.0141 s.e. 0.1164 0.1165 0.1024 0.0786 0.1178 0 0.0007 sigma^2 estimated as 3.368e-09: log likelihood = 888.18, aic = -1762.37 [[3]][[4]] NULL [[3]][[5]] NULL [[3]][[6]] NULL [[3]][[7]] NULL $aic [1] -1760.585 -1762.366 -1762.854 Warning messages: 1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 2: In log(s2) : NaNs produced 3: In log(s2) : NaNs produced 4: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE > postscript(file="/var/wessaorg/rcomp/tmp/1yyq51355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 120 Frequency = 1 [1] 4.037286e-06 4.152618e-06 3.995708e-06 4.148610e-06 3.935198e-06 [6] 4.114850e-06 3.978673e-06 3.931032e-06 4.089234e-06 4.007565e-06 [11] 4.156890e-06 4.134006e-06 -2.794617e-05 1.306177e-04 1.498643e-05 [16] -6.691244e-05 -1.907346e-05 -2.990193e-05 -2.340801e-05 3.309505e-05 [21] 5.423147e-05 1.121817e-05 2.670289e-05 1.464465e-05 2.360756e-05 [26] -1.534211e-05 -6.502504e-07 7.072674e-05 1.287960e-04 1.007222e-04 [31] -4.078822e-05 -1.440893e-05 -8.163019e-05 -3.169352e-05 5.436298e-05 [36] -4.775161e-05 -2.745438e-05 3.288926e-05 6.703654e-05 -1.034961e-04 [41] 6.163775e-05 -9.038814e-05 -7.739973e-05 5.300303e-05 -7.924755e-05 [46] 4.672742e-05 2.376792e-05 -7.866671e-05 -4.230190e-05 -8.662980e-05 [51] -1.893041e-05 2.102371e-05 1.501966e-04 -8.893554e-05 -5.423802e-05 [56] -9.505865e-05 -6.286457e-05 1.348563e-05 -3.993678e-05 -8.280189e-05 [61] 2.767271e-05 1.732894e-05 -4.700069e-05 -3.952283e-05 -3.795888e-05 [66] -3.728374e-05 1.127591e-04 -1.854572e-05 -3.482224e-05 -4.021056e-05 [71] 1.451197e-05 2.110772e-05 -9.919741e-07 1.765382e-05 -4.676914e-05 [76] 1.709928e-05 -9.277558e-05 -6.886578e-05 1.101953e-05 7.357712e-07 [81] -8.383804e-05 -8.868013e-05 -4.218869e-05 1.143575e-04 3.088158e-05 [86] 1.023669e-05 1.549468e-05 6.805166e-05 -2.750774e-05 8.607440e-06 [91] -5.727289e-05 -1.044473e-04 2.355581e-06 -3.484583e-05 2.692813e-06 [96] -1.192098e-05 -7.756696e-05 -5.755890e-05 9.264659e-05 -1.278689e-04 [101] 1.096967e-05 -6.358435e-05 -5.727089e-05 1.002030e-04 -1.597265e-05 [106] 3.331119e-05 1.884531e-05 2.810343e-05 2.573127e-05 8.740169e-05 [111] 1.090252e-05 -5.075164e-05 3.246950e-05 -6.437390e-05 -7.090525e-06 [116] -2.881340e-05 -5.762938e-05 1.585238e-05 1.821768e-06 -3.662002e-05 > postscript(file="/var/wessaorg/rcomp/tmp/2en2p1355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/36wiw1355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4l4v41355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5viga1355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6cz131355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/7tgns1355565681.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > qqline(resid) > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/8g2jc1355565681.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/90ryx1355565681.tab") > > try(system("convert tmp/1yyq51355565681.ps tmp/1yyq51355565681.png",intern=TRUE)) character(0) > try(system("convert tmp/2en2p1355565681.ps tmp/2en2p1355565681.png",intern=TRUE)) character(0) > try(system("convert tmp/36wiw1355565681.ps tmp/36wiw1355565681.png",intern=TRUE)) character(0) > try(system("convert tmp/4l4v41355565681.ps tmp/4l4v41355565681.png",intern=TRUE)) character(0) > try(system("convert tmp/5viga1355565681.ps tmp/5viga1355565681.png",intern=TRUE)) character(0) > try(system("convert tmp/6cz131355565681.ps tmp/6cz131355565681.png",intern=TRUE)) character(0) > try(system("convert tmp/7tgns1355565681.ps tmp/7tgns1355565681.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 14.518 3.927 18.431