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Type 'q()' to quit R. > x <- array(list(4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'No' + ,4 + ,'Yes' + ,4 + ,'No' + ,4 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'Yes' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'No' + ,2 + ,'Yes' + ,2 + ,'Yes' + ,2 + ,'No') + ,dim=c(2 + ,154) + ,dimnames=list(c('x' + ,'y') + ,1:154)) > y <- array(NA,dim=c(2,154),dimnames=list(c('x','y'),1:154)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } There were 50 or more warnings (use warnings() to see the first 50) > par3 = 'Pearson Chi-Squared' > par2 = '2' > par1 = '1' > main = 'Association Plot' > library(vcd) Loading required package: MASS Loading required package: grid Loading required package: colorspace > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > simulate.p.value=FALSE > if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE > x <- t(x) > (z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,])))) [,1] [,2] [1,] "4" "No" [2,] "4" "No" [3,] "4" "No" [4,] "4" "No" [5,] "4" "No" [6,] "4" "No" [7,] "4" "No" [8,] "4" "No" [9,] "4" "No" [10,] "4" "No" [11,] "4" "No" [12,] "4" "No" [13,] "4" "No" [14,] "4" "No" [15,] "4" "No" [16,] "4" "No" [17,] "4" "Yes" [18,] "4" "No" [19,] "4" "No" [20,] "4" "Yes" [21,] "4" "No" [22,] "4" "No" [23,] "4" "No" [24,] "4" "No" [25,] "4" "No" [26,] "4" "No" [27,] "4" "No" [28,] "4" "No" [29,] "4" "No" [30,] "4" "No" [31,] "4" "No" [32,] "4" "No" [33,] "4" "No" [34,] "4" "No" [35,] "4" "No" [36,] "4" "No" [37,] "4" "No" [38,] "4" "No" [39,] "4" "No" [40,] "4" "No" [41,] "4" "Yes" [42,] "4" "No" [43,] "4" "No" [44,] "4" "No" [45,] "4" "No" [46,] "4" "No" [47,] "4" "No" [48,] "4" "No" [49,] "4" "No" [50,] "4" "No" [51,] "4" "No" [52,] "4" "Yes" [53,] "4" "No" [54,] "4" "Yes" [55,] "4" "No" [56,] "4" "No" [57,] "4" "No" [58,] "4" "No" [59,] "4" "No" [60,] "4" "Yes" [61,] "4" "No" [62,] "4" "No" [63,] "4" "No" [64,] "4" "No" [65,] "4" "No" [66,] "4" "No" [67,] "4" "Yes" [68,] "4" "No" [69,] "4" "No" [70,] "4" "No" [71,] "4" "No" [72,] "4" "No" [73,] "4" "No" [74,] "4" "No" [75,] "4" "No" [76,] "4" "No" [77,] "4" "No" [78,] "4" "No" [79,] "4" "Yes" [80,] "4" "No" [81,] "4" "No" [82,] "4" "No" [83,] "4" "No" [84,] "4" "Yes" [85,] "4" "No" [86,] "4" "No" [87,] "2" "No" [88,] "2" "No" [89,] "2" "No" [90,] "2" "No" [91,] "2" "No" [92,] "2" "No" [93,] "2" "No" [94,] "2" "No" [95,] "2" "No" [96,] "2" "No" [97,] "2" "No" [98,] "2" "No" [99,] "2" "No" [100,] "2" "No" [101,] "2" "No" [102,] "2" "No" [103,] "2" "No" [104,] "2" "No" [105,] "2" "No" [106,] "2" "No" [107,] "2" "No" [108,] "2" "No" [109,] "2" "No" [110,] "2" "No" [111,] "2" "No" [112,] "2" "No" [113,] "2" "No" [114,] "2" "No" [115,] "2" "No" [116,] "2" "No" [117,] "2" "No" [118,] "2" "No" [119,] "2" "No" [120,] "2" "No" [121,] "2" "No" [122,] "2" "No" [123,] "2" "No" [124,] "2" "No" [125,] "2" "No" [126,] "2" "No" [127,] "2" "No" [128,] "2" "No" [129,] "2" "No" [130,] "2" "No" [131,] "2" "No" [132,] "2" "No" [133,] "2" "No" [134,] "2" "No" [135,] "2" "No" [136,] "2" "No" [137,] "2" "No" [138,] "2" "No" [139,] "2" "No" [140,] "2" "No" [141,] "2" "Yes" [142,] "2" "No" [143,] "2" "No" [144,] "2" "No" [145,] "2" "No" [146,] "2" "No" [147,] "2" "No" [148,] "2" "No" [149,] "2" "No" [150,] "2" "No" [151,] "2" "No" [152,] "2" "Yes" [153,] "2" "Yes" [154,] "2" "No" > (table1 <- table(z[,cat1],z[,cat2])) No Yes 2 65 3 4 77 9 > (V1<-dimnames(y)[[1]][cat1]) [1] "x" > (V2<-dimnames(y)[[1]][cat2]) [1] "y" > postscript(file="/var/wessaorg/rcomp/tmp/126jk1356040450.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T) > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ', 1,TRUE) > for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } > a<-table.row.end(a) > for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, table1[nr, nc], 1, FALSE) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/24l7f1356040450.tab") > (cst<-chisq.test(table1, simulate.p.value=simulate.p.value) ) Pearson's Chi-squared test with Yates' continuity correction data: table1 X-squared = 1.1858, df = 1, p-value = 0.2762 > if (par3 == 'McNemar Chi-Squared') { + (cst <- mcnemar.test(table1)) + } > if (par3 != 'McNemar Chi-Squared') { + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a, ' ', 1,TRUE) + for(nc in 1:ncol(table1)){ + a<-table.element(a, colnames(table1)[nc], 1, TRUE) + } + a<-table.row.end(a) + for(nr in 1:nrow(table1) ){ + a<-table.element(a, rownames(table1)[nr], 1, TRUE) + for(nc in 1:ncol(table1) ){ + a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE) + } + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/39u9x1356040450.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Statistical Results',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, cst$method, 2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'Chi Square Statistic', 1, TRUE) > a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE) > a<-table.row.end(a) > if(!simulate.p.value){ + a<-table.row.start(a) + a<-table.element(a, 'Degrees of Freedom', 1, TRUE) + a<-table.element(a, cst$parameter, 1,FALSE) + a<-table.row.end(a) + } > a<-table.row.start(a) > a<-table.element(a, 'P value', 1, TRUE) > a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/4v4i51356040451.tab") > > try(system("convert tmp/126jk1356040450.ps tmp/126jk1356040450.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.544 0.196 1.729