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Type 'q()' to quit R. > x <- array(list(1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,1 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,-1 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,-1 + ,1 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,0 + ,1 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,0 + ,0 + ,1 + ,1 + ,0 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,-1 + ,1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,-1 + ,1 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,1 + ,-1 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,0 + ,-1 + ,1 + ,0 + ,0 + ,-1 + ,1 + ,0 + ,0 + ,0 + ,0) + ,dim=c(4 + ,154) + ,dimnames=list(c('Tvier' + ,'Ttwee' + ,'Diff' + ,'CorrectAnalysis ') + ,1:154)) > y <- array(NA,dim=c(4,154),dimnames=list(c('Tvier','Ttwee','Diff','CorrectAnalysis '),1:154)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'TRUE' > par3 = '1' > par2 = '2' > par1 = '4' > ylab = 'Y Variable Name' > xlab = 'X Variable Name' > main = 'Title Goes Here' > par4 <- 'TRUE' > par3 <- '1' > par2 <- '2' > par1 <- '4' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: aston2 > #To cite this work: Ian E. Holliday, 2012, Two-Way ANOVA (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_Two%20Factor%20ANOVA.wasp/ > #Source of accompanying publication: > # > cat1 <- as.numeric(par1) # > cat2<- as.numeric(par2) # > cat3 <- as.numeric(par3) > intercept<-as.logical(par4) > x <- t(x) > x1<-as.numeric(x[,cat1]) > f1<-as.character(x[,cat2]) > f2 <- as.character(x[,cat3]) > xdf<-data.frame(x1,f1, f2) > (V1<-dimnames(y)[[1]][cat1]) [1] "CorrectAnalysis\r\r\r" > (V2<-dimnames(y)[[1]][cat2]) [1] "Ttwee" > (V3 <-dimnames(y)[[1]][cat3]) [1] "Tvier" > names(xdf)<-c('Response', 'Treatment_A', 'Treatment_B') > if(intercept == FALSE) (lmxdf<-lm(Response ~ Treatment_A * Treatment_B- 1, data = xdf) ) else (lmxdf<-lm(Response ~ Treatment_A * Treatment_B, data = xdf) ) Call: lm(formula = Response ~ Treatment_A * Treatment_B, data = xdf) Coefficients: (Intercept) Treatment_A1 0.05263 -0.05263 Treatment_B1 Treatment_A1:Treatment_B1 0.20824 NA > (aov.xdf<-aov(lmxdf) ) Call: aov(formula = lmxdf) Terms: Treatment_A Treatment_B Residuals Sum of Squares 0.116030 0.829912 10.118993 Deg. of Freedom 1 1 151 Residual standard error: 0.2588691 1 out of 4 effects not estimable Estimated effects may be unbalanced > (anova.xdf<-anova(lmxdf) ) Analysis of Variance Table Response: Response Df Sum Sq Mean Sq F value Pr(>F) Treatment_A 1 0.1160 0.11603 1.7314 0.1902201 Treatment_B 1 0.8299 0.82991 12.3843 0.0005724 *** Residuals 151 10.1190 0.06701 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ANOVA Model', length(lmxdf$coefficients)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, lmxdf$call['formula'],length(lmxdf$coefficients)+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, 'means',,TRUE) > for(i in 1:length(lmxdf$coefficients)){ + a<-table.element(a, round(lmxdf$coefficients[i], digits=3),,FALSE) + } > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/165xb1356043764.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ANOVA Statistics', 5+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a, ' ',,TRUE) > a<-table.element(a, 'Df',,FALSE) > a<-table.element(a, 'Sum Sq',,FALSE) > a<-table.element(a, 'Mean Sq',,FALSE) > a<-table.element(a, 'F value',,FALSE) > a<-table.element(a, 'Pr(>F)',,FALSE) > a<-table.row.end(a) > for(i in 1 : length(rownames(anova.xdf))-1){ + a<-table.row.start(a) + a<-table.element(a,rownames(anova.xdf)[i] ,,TRUE) + a<-table.element(a, anova.xdf$Df[1],,FALSE) + a<-table.element(a, round(anova.xdf$'Sum Sq'[i], digits=3),,FALSE) + a<-table.element(a, round(anova.xdf$'Mean Sq'[i], digits=3),,FALSE) + a<-table.element(a, round(anova.xdf$'F value'[i], digits=3),,FALSE) + a<-table.element(a, round(anova.xdf$'Pr(>F)'[i], digits=3),,FALSE) + a<-table.row.end(a) + } > a<-table.row.start(a) > a<-table.element(a, 'Residuals',,TRUE) > a<-table.element(a, anova.xdf$'Df'[i+1],,FALSE) > a<-table.element(a, round(anova.xdf$'Sum Sq'[i+1], digits=3),,FALSE) > a<-table.element(a, round(anova.xdf$'Mean Sq'[i+1], digits=3),,FALSE) > a<-table.element(a, ' ',,FALSE) > a<-table.element(a, ' ',,FALSE) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/2b5r91356043764.tab") > postscript(file="/var/wessaorg/rcomp/tmp/32v0n1356043764.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(Response ~ Treatment_A + Treatment_B, data=xdf, xlab=V2, ylab=V1, main='Boxplots of ANOVA Groups') Warning messages: 1: In title(xlab = "Ttwee", ylab = "CorrectAnalysis\r\r\r", main = "Boxplots of ANOVA Groups") : font width unknown for character 0xd 2: In title(xlab = "Ttwee", ylab = "CorrectAnalysis\r\r\r", main = "Boxplots of ANOVA Groups") : font width unknown for character 0xd 3: In title(xlab = "Ttwee", ylab = "CorrectAnalysis\r\r\r", main = "Boxplots of ANOVA Groups") : font width unknown for character 0xd > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4umwb1356043764.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > xdf2 <- xdf # to preserve xdf make copy for function > names(xdf2) <- c(V1, V2, V3) > plot.design(xdf2, main='Design Plot of Group Means') Warning messages: 1: In title(...) : font width unknown for character 0xd 2: In title(...) : font width unknown for character 0xd 3: In title(...) : font width unknown for character 0xd > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5nd0g1356043764.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > interaction.plot(xdf$Treatment_A, xdf$Treatment_B, xdf$Response, xlab=V2, ylab=V1, trace.label=V3, main='Possible Interactions Between Anova Groups') Warning messages: 1: In title(...) : font width unknown for character 0xd 2: In title(...) : font width unknown for character 0xd 3: In title(...) : font width unknown for character 0xd > dev.off() null device 1 > if(intercept==TRUE){ + thsd<-TukeyHSD(aov.xdf) + names(thsd) <- c(V2, V3, paste(V2, ':', V3, sep='')) + postscript(file="/var/wessaorg/rcomp/tmp/6upb21356043764.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + layout(matrix(c(1,2,3,3), 2,2)) + plot(thsd, las=1) + dev.off() + } Error in names(thsd) <- c(V2, V3, paste(V2, ":", V3, sep = "")) : 'names' attribute [3] must be the same length as the vector [2] Execution halted