x <- c(41086,39690,43129,37863,35953,29133,24693,22205,21725,27192,21790,13253,37702,30364,32609,30212,29965,28352,25814,22414,20506,28806,22228,13971,36845,35338,35022,34777,26887,23970,22780,17351,21382,24561,17409,11514,31514,27071,29462,26105,22397,23843,21705,18089,20764,25316,17704,15548,28029,29383,36438,32034,22679,24319,18004,17537,20366,22782,19169,13807,29743,25591,29096,26482,22405,27044,17970,18730,19684,19785,18479,10698) par1 = '12' par1 <- '12' #'GNU S' R Code compiled by R2WASP v. 1.2.291 () #Author: root #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ #Source of accompanying publication: Office for Research, Development, and Education # par1 <- as.numeric(par1) (n <- length(x)) (np <- floor(n / par1)) arr <- array(NA,dim=c(par1,np)) j <- 0 k <- 1 for (i in 1:(np*par1)) { j = j + 1 arr[j,k] <- x[i] if (j == par1) { j = 0 k=k+1 } } arr arr.mean <- array(NA,dim=np) arr.sd <- array(NA,dim=np) arr.range <- array(NA,dim=np) for (j in 1:np) { arr.mean[j] <- mean(arr[,j],na.rm=TRUE) arr.sd[j] <- sd(arr[,j],na.rm=TRUE) arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) } arr.mean arr.sd arr.range (lm1 <- lm(arr.sd~arr.mean)) (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) (lm2 <- lm(arr.range~arr.mean)) postscript(file="/var/wessaorg/rcomp/tmp/18bch1356642674.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') dev.off() postscript(file="/var/wessaorg/rcomp/tmp/2ksdx1356642674.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') dev.off() #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab load(file="/var/wessaorg/rcomp/createtable") a<-table.start() a<-table.row.start(a) a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Section',header=TRUE) a<-table.element(a,'Mean',header=TRUE) a<-table.element(a,'Standard Deviation',header=TRUE) a<-table.element(a,'Range',header=TRUE) a<-table.row.end(a) for (j in 1:np) { a<-table.row.start(a) a<-table.element(a,j,header=TRUE) a<-table.element(a,arr.mean[j]) a<-table.element(a,arr.sd[j] ) a<-table.element(a,arr.range[j] ) a<-table.row.end(a) } a<-table.end(a) table.save(a,file="/var/wessaorg/rcomp/tmp/33cit1356642674.tab") a<-table.start() a<-table.row.start(a) a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'alpha',header=TRUE) a<-table.element(a,lm1$coefficients[[1]]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'beta',header=TRUE) a<-table.element(a,lm1$coefficients[[2]]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'S.D.',header=TRUE) a<-table.element(a,summary(lm1)$coefficients[2,2]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'T-STAT',header=TRUE) a<-table.element(a,summary(lm1)$coefficients[2,3]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'p-value',header=TRUE) a<-table.element(a,summary(lm1)$coefficients[2,4]) a<-table.row.end(a) a<-table.end(a) table.save(a,file="/var/wessaorg/rcomp/tmp/4wx7b1356642674.tab") a<-table.start() a<-table.row.start(a) a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'alpha',header=TRUE) a<-table.element(a,lnlm1$coefficients[[1]]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'beta',header=TRUE) a<-table.element(a,lnlm1$coefficients[[2]]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'S.D.',header=TRUE) a<-table.element(a,summary(lnlm1)$coefficients[2,2]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'T-STAT',header=TRUE) a<-table.element(a,summary(lnlm1)$coefficients[2,3]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'p-value',header=TRUE) a<-table.element(a,summary(lnlm1)$coefficients[2,4]) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Lambda',header=TRUE) a<-table.element(a,1-lnlm1$coefficients[[2]]) a<-table.row.end(a) a<-table.end(a) table.save(a,file="/var/wessaorg/rcomp/tmp/5ymo81356642674.tab") try(system("convert tmp/18bch1356642674.ps tmp/18bch1356642674.png",intern=TRUE)) try(system("convert tmp/2ksdx1356642674.ps tmp/2ksdx1356642674.png",intern=TRUE))