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Type 'q()' to quit R. > x <- array(list(58,51,53,54,59,59,166,56,51,52,64,64,52,57,65,66,62,62,61,61,61,61,54,59,50,50,63,61,58,60,39,41,71,71,52,52,68,63,56,54,54,53,63,59,54,55,49,51.16969429,54,56,75,75,56,57,66,65,78,75,60,59,64,63,64,62,52,51,62,61,55,54,56,57,50,50,50,51.16969429,50,55,63,64,61,60,53,52,60,55,56,56,53,53,57,59,57,56,56,56,56,57,50,50,52,52,55,51.16969429,55,55,47,47,45,45,62,63,53,51,52,51,57,55,64,64,59,55,55,57,76,77,62,62,68,68,55,55,52,56,47,51.16969429,45,45,68,68,44,44,62,61,56,53,50,47,53,53,64,62,62,51.16969429,52,53,53,55,54,55,64,66,55,55,55,55,59,55,70,67,57,58,47,47,47,45,55,51.16969429,48,44,59,51.16969429,58,51.16969429,57,56,51,50,54,54,53,52,59,58,59,59,63,62,66,66,53,50,54,51.16969429,60,51.16969429,43,51.16969429,63,59,56,56,60,55,58,54,50,49,59,59,51,51,62,61),dim=c(2,112),dimnames=list(c('Aw','repw'),1:112)) > y <- array(NA,dim=c(2,112),dimnames=list(c('Aw','repw'),1:112)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = '0' > par2 = 'TRUE' > par1 = '3' > ylab = '' > xlab = '' > main = 'Females weight and self-report weight' > par3 <- '0' > par2 <- 'TRUE' > par1 <- '3' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: aston2 > #To cite this work: Ian E. Holliday, 2012, CARE Boxplots and Scatterplot Matrix (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_CARE%20Data%20Boxplot.wasp/ > #Source of accompanying publication: > # > par1 <- as.numeric(par1) #colour > par2<- as.logical(par2) # Notches ? > par3<-as.numeric(par3) # % trim > if(par3>45){par3<-45;warning('trim limited to 45%')} > if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')} > lotrm<-as.integer(length(y[1,])*par3/100)+1 > hitrm<-as.integer(length(y[1,])*(100-par3)/100) > y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) )) > for(i in 1:dim(y)[1]){ + tmp<-order(y[i,]) + y1[i,]<- y[i, tmp[lotrm:hitrm] ] + } > postscript(file="/var/wessaorg/rcomp/tmp/1l44i1338542123.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pairs(t(y)) > dev.off() null device 1 > y<-y1 > z <- as.data.frame(t(y)) > postscript(file="/var/wessaorg/rcomp/tmp/2i4281338542123.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1)) $stats [,1] [,2] [1,] 39.0 41.00000 [2,] 52.5 51.16969 [3,] 56.0 55.00000 [4,] 62.0 60.50000 [5,] 76.0 71.00000 $n [1] 112 112 $conf [,1] [,2] [1,] 54.58169 53.60702 [2,] 57.41831 56.39298 $out [1] 78 166 75 75 77 $group [1] 1 1 2 2 2 $names [1] "Aw" "repw" > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + for (j in 1:5) + { + a<-table.element(a,signif(r$stats[j,i], digits=4)) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3wz4o1338542123.tab") > if (par2){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Boxplot Notches',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Variable',1,TRUE) + a<-table.element(a,'lower bound',1,TRUE) + a<-table.element(a,'median',1,TRUE) + a<-table.element(a,'upper bound',1,TRUE) + a<-table.row.end(a) + for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(r$conf[1,i], digits=4)) + a<-table.element(a, signif(r$stats[3,i], digits=4)) + a<-table.element(a,signif(r$conf[2,i], digits=4)) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/4jb111338542123.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Boxplot Means',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4)) + a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4)) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/58iwa1338542123.tab") > > try(system("convert tmp/1l44i1338542123.ps tmp/1l44i1338542123.png",intern=TRUE)) character(0) > try(system("convert tmp/2i4281338542123.ps tmp/2i4281338542123.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.759 0.210 0.965