R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(77
+ ,182
+ ,77
+ ,180
+ ,58
+ ,161
+ ,51
+ ,159
+ ,53
+ ,161
+ ,54
+ ,158
+ ,68
+ ,177
+ ,70
+ ,175
+ ,59
+ ,157
+ ,59
+ ,155
+ ,76
+ ,170
+ ,76
+ ,165
+ ,76
+ ,167
+ ,77
+ ,165
+ ,69
+ ,186
+ ,73
+ ,180
+ ,71
+ ,178
+ ,71
+ ,175
+ ,65
+ ,171
+ ,64
+ ,170
+ ,70
+ ,175
+ ,75
+ ,174
+ ,166
+ ,57
+ ,56
+ ,163
+ ,51
+ ,161
+ ,52
+ ,158
+ ,64
+ ,168
+ ,64
+ ,165
+ ,52
+ ,163
+ ,57
+ ,160
+ ,65
+ ,166
+ ,66
+ ,165
+ ,92
+ ,187
+ ,101
+ ,185
+ ,62
+ ,168
+ ,62
+ ,165
+ ,76
+ ,197
+ ,75
+ ,200
+ ,61
+ ,175
+ ,61
+ ,171
+ ,119
+ ,180
+ ,124
+ ,178
+ ,61
+ ,170
+ ,61
+ ,170
+ ,65
+ ,175
+ ,66
+ ,173
+ ,66
+ ,173
+ ,70
+ ,170
+ ,54
+ ,171
+ ,59
+ ,168
+ ,50
+ ,166
+ ,50
+ ,165
+ ,63
+ ,169
+ ,61
+ ,168
+ ,58
+ ,166
+ ,60
+ ,160
+ ,39
+ ,157
+ ,41
+ ,153
+ ,101
+ ,183
+ ,100
+ ,180
+ ,71
+ ,166
+ ,71
+ ,165
+ ,75
+ ,178
+ ,73
+ ,175
+ ,79
+ ,173
+ ,76
+ ,173
+ ,52
+ ,164
+ ,52
+ ,161
+ ,68
+ ,169
+ ,63
+ ,170
+ ,64
+ ,176
+ ,65
+ ,175
+ ,56
+ ,166
+ ,54
+ ,165
+ ,69
+ ,174
+ ,69
+ ,171
+ ,88
+ ,178
+ ,86
+ ,175
+ ,65
+ ,187
+ ,67
+ ,188
+ ,54
+ ,164
+ ,53
+ ,160
+ ,80
+ ,178
+ ,80
+ ,178
+ ,63
+ ,163
+ ,59
+ ,159
+ ,78
+ ,183
+ ,80
+ ,180
+ ,85
+ ,179
+ ,82
+ ,175
+ ,54
+ ,160
+ ,55
+ ,158
+ ,54
+ ,174
+ ,56
+ ,173
+ ,75
+ ,162
+ ,75
+ ,158
+ ,82
+ ,182
+ ,85
+ ,183
+ ,56
+ ,165
+ ,57
+ ,163
+ ,74
+ ,169
+ ,73
+ ,170
+ ,102
+ ,185
+ ,107
+ ,185
+ ,73
+ ,183
+ ,74
+ ,180
+ ,75
+ ,172
+ ,70
+ ,169
+ ,57
+ ,173
+ ,58
+ ,170
+ ,68
+ ,165
+ ,69
+ ,165
+ ,71
+ ,177
+ ,71
+ ,170
+ ,71
+ ,180
+ ,76
+ ,175
+ ,78
+ ,173
+ ,75
+ ,169
+ ,97
+ ,189
+ ,98
+ ,185
+ ,60
+ ,162
+ ,59
+ ,160
+ ,64
+ ,165
+ ,63
+ ,163
+ ,64
+ ,164
+ ,62
+ ,161
+ ,52
+ ,158
+ ,51
+ ,155
+ ,80
+ ,178
+ ,76
+ ,175
+ ,62
+ ,175
+ ,61
+ ,171
+ ,66
+ ,173
+ ,66
+ ,175
+ ,55
+ ,165
+ ,54
+ ,163
+ ,56
+ ,163
+ ,57
+ ,159
+ ,50
+ ,166
+ ,50
+ ,161
+ ,50
+ ,160
+ ,55
+ ,150
+ ,63
+ ,160
+ ,64
+ ,158
+ ,69
+ ,182
+ ,70
+ ,180
+ ,69
+ ,183
+ ,70
+ ,183
+ ,61
+ ,165
+ ,60
+ ,163
+ ,55
+ ,168
+ ,56
+ ,170
+ ,53
+ ,169
+ ,52
+ ,175
+ ,60
+ ,167
+ ,55
+ ,163
+ ,56
+ ,170
+ ,56
+ ,170
+ ,59
+ ,182
+ ,61
+ ,183
+ ,62
+ ,178
+ ,66
+ ,175
+ ,53
+ ,165
+ ,53
+ ,165
+ ,57
+ ,163
+ ,59
+ ,160
+ ,57
+ ,162
+ ,56
+ ,160
+ ,70
+ ,173
+ ,68
+ ,170
+ ,56
+ ,161
+ ,56
+ ,161
+ ,84
+ ,184
+ ,86
+ ,183
+ ,69
+ ,180
+ ,71
+ ,180
+ ,88
+ ,189
+ ,87
+ ,185
+ ,56
+ ,165
+ ,57
+ ,160
+ ,103
+ ,185
+ ,101
+ ,182
+ ,50
+ ,169
+ ,50
+ ,165
+ ,52
+ ,159
+ ,52
+ ,153
+ ,55
+ ,164
+ ,55
+ ,163
+ ,63
+ ,178
+ ,63
+ ,175
+ ,47
+ ,163
+ ,47
+ ,160
+ ,45
+ ,163
+ ,45
+ ,160
+ ,62
+ ,175
+ ,63
+ ,173
+ ,53
+ ,164
+ ,51
+ ,160
+ ,52
+ ,152
+ ,51
+ ,150
+ ,57
+ ,167
+ ,55
+ ,164
+ ,64
+ ,166
+ ,64
+ ,165
+ ,59
+ ,166
+ ,55
+ ,163
+ ,84
+ ,183
+ ,90
+ ,183
+ ,79
+ ,179
+ ,79
+ ,171
+ ,55
+ ,174
+ ,57
+ ,171
+ ,67
+ ,179
+ ,67
+ ,179
+ ,76
+ ,167
+ ,77
+ ,165
+ ,62
+ ,168
+ ,62
+ ,163
+ ,83
+ ,184
+ ,83
+ ,181
+ ,96
+ ,184
+ ,94
+ ,183
+ ,75
+ ,169
+ ,76
+ ,165
+ ,65
+ ,178
+ ,66
+ ,178
+ ,78
+ ,178
+ ,77
+ ,175
+ ,69
+ ,167
+ ,73
+ ,165
+ ,68
+ ,178
+ ,68
+ ,175
+ ,55
+ ,165
+ ,55
+ ,163
+ ,45
+ ,157
+ ,45
+ ,153
+ ,68
+ ,171
+ ,68
+ ,169
+ ,44
+ ,157
+ ,44
+ ,155
+ ,62
+ ,166
+ ,61
+ ,163
+ ,87
+ ,185
+ ,89
+ ,185
+ ,56
+ ,160
+ ,53
+ ,158
+ ,50
+ ,148
+ ,47
+ ,148
+ ,83
+ ,177
+ ,84
+ ,175
+ ,53
+ ,162
+ ,53
+ ,160
+ ,64
+ ,172
+ ,62
+ ,168
+ ,90
+ ,188
+ ,91
+ ,185
+ ,85
+ ,191
+ ,83
+ ,188
+ ,66
+ ,175
+ ,68
+ ,175
+ ,52
+ ,163
+ ,53
+ ,160
+ ,53
+ ,165
+ ,55
+ ,163
+ ,54
+ ,176
+ ,55
+ ,176
+ ,64
+ ,171
+ ,66
+ ,171
+ ,55
+ ,160
+ ,55
+ ,155
+ ,55
+ ,165
+ ,55
+ ,165
+ ,59
+ ,157
+ ,55
+ ,158
+ ,70
+ ,173
+ ,67
+ ,170
+ ,88
+ ,184
+ ,86
+ ,183
+ ,57
+ ,168
+ ,58
+ ,165
+ ,47
+ ,162
+ ,47
+ ,160
+ ,47
+ ,150
+ ,45
+ ,152
+ ,48
+ ,163
+ ,44
+ ,160
+ ,54
+ ,169
+ ,58
+ ,165
+ ,69
+ ,172
+ ,68
+ ,174
+ ,57
+ ,167
+ ,56
+ ,165
+ ,51
+ ,163
+ ,50
+ ,160
+ ,54
+ ,161
+ ,54
+ ,160
+ ,53
+ ,162
+ ,52
+ ,158
+ ,59
+ ,172
+ ,58
+ ,171
+ ,56
+ ,163
+ ,58
+ ,161
+ ,59
+ ,159
+ ,59
+ ,155
+ ,63
+ ,170
+ ,62
+ ,168
+ ,66
+ ,166
+ ,66
+ ,165
+ ,96
+ ,191
+ ,95
+ ,188
+ ,53
+ ,158
+ ,50
+ ,155
+ ,76
+ ,169
+ ,75
+ ,165
+ ,66
+ ,170
+ ,67
+ ,165
+ ,81
+ ,178
+ ,82
+ ,175
+ ,68
+ ,174
+ ,68
+ ,173
+ ,80
+ ,176
+ ,78
+ ,175
+ ,62
+ ,168
+ ,64
+ ,168
+ ,71
+ ,178
+ ,68
+ ,178
+ ,61
+ ,170
+ ,61
+ ,170)
+ ,dim=c(4
+ ,164)
+ ,dimnames=list(c('weight'
+ ,'height'
+ ,'repwt'
+ ,'repht
')
+ ,1:164))
>  y <- array(NA,dim=c(4,164),dimnames=list(c('weight','height','repwt','repht
'),1:164))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'TRUE'
> par1 = '3'
> ylab = 'Test Scores'
> xlab = 'CARE Variable Names'
> main = 'CARE DATA'
> par3 <- '0'
> par2 <- 'TRUE'
> par1 <- '3'
> #'GNU S' R Code compiled by R2WASP v. 1.2.291 ()
> #Author: aston2
> #To cite this work: Ian E. Holliday, 2012, CARE Boxplots and Scatterplot Matrix (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_CARE%20Data%20Boxplot.wasp/
> #Source of accompanying publication: 
> #
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1mxt01338544708.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
Warning messages:
1: In strwidth(labels, "user") : font width unknown for character 0xd
2: In text.default(x, y, txt, cex = cex, font = font) :
  font width unknown for character 0xd
3: In text.default(x, y, txt, cex = cex, font = font) :
  font metrics unknown for character 0xd
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2erk71338544708.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
      [,1] [,2] [,3] [,4]
[1,]  39.0  148   41  148
[2,]  55.0  164   55  161
[3,]  63.0  169   63  168
[4,]  73.5  178   73  175
[5,] 101.0  197  100  188

$n
[1] 164 164 164 164

$conf
         [,1]     [,2]     [,3]     [,4]
[1,] 60.71752 167.2727 60.77921 166.2727
[2,] 65.28248 170.7273 65.22079 169.7273

$out
 [1] 102 103 119 166  57 101 101 107 124 200

$group
 [1] 1 1 1 1 2 3 3 3 3 4

$names
[1] "weight"  "height"  "repwt"   "repht\r"

Warning messages:
1: In axis(side = 1, at = 1:4, labels = c("weight", "height", "repwt",  :
  font width unknown for character 0xd
2: In axis(side = 1, at = 1:4, labels = c("weight", "height", "repwt",  :
  font width unknown for character 0xd
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,signif(r$stats[j,i], digits=4))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3u8as1338544708.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(r$conf[1,i], digits=4))
+ a<-table.element(a, signif(r$stats[3,i], digits=4))
+ a<-table.element(a,signif(r$conf[2,i], digits=4))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4ixb51338544708.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4))
+ a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4))
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/5tq5g1338544708.tab") 
> 
> try(system("convert tmp/1mxt01338544708.ps tmp/1mxt01338544708.png",intern=TRUE))
character(0)
> try(system("convert tmp/2erk71338544708.ps tmp/2erk71338544708.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.078   0.197   1.273